Strain Fitness in Sphingobium sp. HT1-2 around GFF1785

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,806,599	-		GFF1781	0.52	-0.9
1,806,628	-		GFF1781	0.59	-1.2
1,806,628	-		GFF1781	0.59	-2.7
1,806,664	-		GFF1781	0.67	+0.2
1,806,664	-		GFF1781	0.67	-0.3
1,806,664	-		GFF1781	0.67	-0.5
1,806,702	-		GFF1781	0.75	+1.2
1,806,703	+		GFF1781	0.76	+1.4
1,806,706	-		GFF1781	0.76	-1.8
1,806,711	+		GFF1781	0.77	-0.3
1,806,716	-		GFF1781	0.79	-0.2
1,806,719	-		GFF1781	0.79	-0.1
1,806,721	+		GFF1781	0.80	+0.2
1,806,724	-		GFF1781	0.80	+0.1
1,806,726	+		GFF1781	0.81	-0.2
1,806,726	+		GFF1781	0.81	+1.0
1,806,729	-		GFF1781	0.82	-1.2
1,806,744	-		GFF1781	0.85	-1.3
1,806,776	+				-1.4
1,806,783	-				+0.8
1,806,784	-				+0.8
1,806,786	+				+0.0
1,806,786	+				-1.3
1,806,795	+				-1.2
1,806,805	+				+0.8
1,806,806	+				+0.9
1,806,811	+				-0.4
1,806,811	+				-1.9
1,806,811	+				-1.2
1,806,819	-				+0.8
1,806,820	+				-0.6
1,806,824	-				-0.0
1,806,838	-				+0.3
1,806,855	-		GFF1782	0.15	+1.4
1,806,855	-		GFF1782	0.15	-0.8
1,806,865	-		GFF1782	0.18	-0.2
1,806,881	+		GFF1782	0.23	-0.6
1,806,881	-		GFF1782	0.23	-1.7
1,806,883	+		GFF1782	0.24	-0.3
1,806,980	+		GFF1782	0.54	+1.4
1,806,980	+		GFF1782	0.54	+0.1
1,806,988	-		GFF1782	0.56	+0.5
1,807,020	-		GFF1782	0.66	-1.1
1,807,030	+		GFF1782	0.69	-1.2
1,807,030	+		GFF1782	0.69	-2.2
1,807,038	-		GFF1782	0.72	-0.2
1,807,055	-		GFF1782	0.77	-2.3
1,807,055	-		GFF1782	0.77	+0.6
1,807,069	+		GFF1782	0.82	-1.6
1,807,071	+		GFF1782	0.82	+1.0
1,807,076	+		GFF1782	0.84	+1.0
1,807,084	+		GFF1782	0.86	-2.1
1,807,084	+		GFF1782	0.86	+0.9
1,807,084	-		GFF1782	0.86	+0.4
1,807,084	-		GFF1782	0.86	-1.1
1,807,092	-		GFF1782	0.89	-0.3
1,807,092	-		GFF1782	0.89	-1.8
1,807,092	-		GFF1782	0.89	+0.2
1,807,129	-				-0.2
1,807,133	+				-1.4
1,807,139	+				-0.7
1,807,142	-				-0.9
1,807,147	-				+1.2
1,807,147	-				-0.7
1,807,147	-				-0.4
1,807,161	+				-0.3
1,807,161	+				-0.4
1,807,164	-				+0.3
1,807,164	-				+0.1
1,807,169	-				-0.9
1,807,169	-				+0.4
1,807,169	-				+0.7
1,807,169	-				-0.2
1,807,185	-				-0.5
1,807,193	-		GFF1783	0.12	-0.2
1,807,216	-		GFF1783	0.26	-0.5
1,807,250	+		GFF1783	0.46	-1.3
1,807,250	+		GFF1783	0.46	+0.5
1,807,250	+		GFF1783	0.46	-1.2
1,807,253	-		GFF1783	0.48	-0.1
1,807,258	-		GFF1783	0.51	-0.8
1,807,267	+		GFF1783	0.56	+0.9
1,807,277	+		GFF1783	0.62	+0.0
1,807,284	+		GFF1783	0.66	-0.1
1,807,293	-		GFF1783	0.71	-0.4
1,807,293	-		GFF1783	0.71	+0.1
1,807,314	+		GFF1783	0.84	-1.6
1,807,319	-		GFF1783	0.87	-0.4
1,807,321	+		GFF1783	0.88	+0.6
1,807,321	+		GFF1783	0.88	+1.0
1,807,321	+		GFF1783	0.88	-0.6
1,807,321	+		GFF1783	0.88	-1.6
1,807,321	+		GFF1783	0.88	+0.2
1,807,321	+		GFF1783	0.88	+1.2
1,807,321	+		GFF1783	0.88	+1.7
1,807,321	+		GFF1783	0.88	+1.5
1,807,325	+				+0.4
1,807,329	-				-0.7
1,807,329	-				-0.0
1,807,334	-				+0.8
1,807,335	+				+0.6
1,807,335	+				-1.4
1,807,342	-				-0.8
1,807,345	+				+0.5
1,807,353	-				+0.3
1,807,353	-				+0.1
1,807,353	-				-1.2
1,807,362	+		GFF1784	0.10	-0.2
1,807,388	+		GFF1784	0.29	-0.4
1,807,430	-		GFF1784	0.59	-0.0
1,807,446	-		GFF1784	0.71	-1.2
1,807,457	+		GFF1784	0.79	+0.8
1,807,457	+		GFF1784	0.79	+0.4
1,807,457	+		GFF1784	0.79	+0.9
1,807,457	+		GFF1784	0.79	-1.6
1,807,457	+		GFF1784	0.79	+0.5
1,807,462	+		GFF1784	0.83	+0.3
1,807,462	+		GFF1784	0.83	-1.7
1,807,462	+		GFF1784	0.83	-1.7
1,807,462	+		GFF1784	0.83	+0.1
1,807,462	+		GFF1784	0.83	+0.7
1,807,462	+		GFF1784	0.83	+0.3
1,807,462	+		GFF1784	0.83	-1.3
1,807,465	-		GFF1784	0.85	-0.3
1,807,465	-		GFF1784	0.85	-0.4
1,807,465	-		GFF1784	0.85	-0.7
1,807,467	+		GFF1784	0.86	+0.1
1,807,467	+		GFF1784	0.86	-0.6
1,807,467	+		GFF1784	0.86	-0.8
1,807,470	-		GFF1784	0.88	-0.7
1,807,470	-		GFF1784	0.88	-0.1
1,807,472	+				-0.0
1,807,475	-				-1.9
1,807,475	-				-0.7
1,807,477	-				+0.3
1,807,506	+				+0.1
1,807,601	-				-1.1
1,807,611	+				-0.7
1,807,619	-				-0.5
1,807,621	+				+1.1
1,807,621	+				-0.3
1,807,629	+				-0.8
1,807,631	+				-0.7
1,807,631	+				+0.1
1,807,637	-				-0.9
1,807,639	-				-0.5
1,807,639	-				-0.1
1,807,685	+				-2.3
1,807,715	+		GFF1785	0.11	+0.2
1,807,715	+		GFF1785	0.11	-0.5
1,807,715	+		GFF1785	0.11	-1.2
1,807,715	+		GFF1785	0.11	+0.2
1,807,723	-		GFF1785	0.11	+0.7
1,807,723	-		GFF1785	0.11	-0.5
1,807,723	-		GFF1785	0.11	-1.7
1,807,723	-		GFF1785	0.11	-0.4
1,807,723	-		GFF1785	0.11	+0.4
1,807,736	+		GFF1785	0.12	-0.8
1,807,738	+		GFF1785	0.13	+1.3
1,807,743	+		GFF1785	0.13	-0.8
1,807,751	-		GFF1785	0.14	-0.0
1,807,756	-		GFF1785	0.14	-0.4
1,807,788	-		GFF1785	0.17	+1.4
1,807,811	-		GFF1785	0.19	-0.0
1,807,813	+		GFF1785	0.19	-0.2
1,807,826	+		GFF1785	0.20	+0.6
1,807,846	-		GFF1785	0.22	+0.4
1,807,849	+		GFF1785	0.22	-1.6
1,807,870	+		GFF1785	0.24	+0.6
1,807,872	+		GFF1785	0.24	+0.3
1,807,872	+		GFF1785	0.24	-0.3
1,807,872	+		GFF1785	0.24	+0.3
1,807,872	+		GFF1785	0.24	-0.7
1,807,872	+		GFF1785	0.24	-0.9
1,807,877	+		GFF1785	0.25	+0.3
1,807,878	-		GFF1785	0.25	+0.7
1,807,880	-		GFF1785	0.25	+0.6
1,807,880	-		GFF1785	0.25	+0.2
1,807,880	-		GFF1785	0.25	-0.4
1,807,880	-		GFF1785	0.25	-1.8
1,807,882	+		GFF1785	0.25	+1.9
1,807,885	-		GFF1785	0.26	-0.8
1,807,889	-		GFF1785	0.26	-1.0
1,807,906	+		GFF1785	0.27	-0.2
1,807,907	-		GFF1785	0.28	-1.2
1,807,929	-		GFF1785	0.30	-2.5
1,807,942	+		GFF1785	0.31	-0.4
1,807,943	+		GFF1785	0.31	-1.1
1,807,948	+		GFF1785	0.31	+0.3
1,807,958	+		GFF1785	0.32	+0.1
1,807,958	+		GFF1785	0.32	+0.6
1,807,970	+		GFF1785	0.33	+0.5
1,807,970	-		GFF1785	0.33	+0.6
1,807,976	-		GFF1785	0.34	-0.0
1,807,992	+		GFF1785	0.35	-0.1
1,808,017	+		GFF1785	0.37	+0.0
1,808,020	+		GFF1785	0.38	-0.4
1,808,038	+		GFF1785	0.39	+0.9
1,808,047	+		GFF1785	0.40	-0.9
1,808,047	+		GFF1785	0.40	-1.9
1,808,047	+		GFF1785	0.40	+0.4
1,808,047	+		GFF1785	0.40	-0.7
1,808,047	+		GFF1785	0.40	-0.2
1,808,047	+		GFF1785	0.40	-1.1
1,808,047	+		GFF1785	0.40	+0.3
1,808,047	+		GFF1785	0.40	-2.3
1,808,047	-		GFF1785	0.40	+0.1
1,808,054	+		GFF1785	0.41	-0.2
1,808,055	-		GFF1785	0.41	-0.0
1,808,055	-		GFF1785	0.41	-1.2
1,808,055	-		GFF1785	0.41	+1.3
1,808,055	-		GFF1785	0.41	-1.3
1,808,055	-		GFF1785	0.41	+1.4
1,808,055	-		GFF1785	0.41	+1.3
1,808,055	-		GFF1785	0.41	-0.8
1,808,059	+		GFF1785	0.41	-0.2
1,808,077	+		GFF1785	0.43	-0.0
1,808,087	-		GFF1785	0.44	+0.3
1,808,092	+		GFF1785	0.44	-1.2
1,808,092	+		GFF1785	0.44	-1.9
1,808,094	+		GFF1785	0.44	-1.6
1,808,100	-		GFF1785	0.45	-1.0
1,808,102	-		GFF1785	0.45	-0.1
1,808,102	-		GFF1785	0.45	-0.3
1,808,114	+		GFF1785	0.46	-0.8
1,808,114	+		GFF1785	0.46	-1.1
1,808,114	+		GFF1785	0.46	-0.3
1,808,122	-		GFF1785	0.47	+0.0
1,808,122	-		GFF1785	0.47	+0.2
1,808,129	+		GFF1785	0.47	+0.2
1,808,129	+		GFF1785	0.47	-0.2
1,808,129	+		GFF1785	0.47	-0.6
1,808,137	-		GFF1785	0.48	-0.6
1,808,137	-		GFF1785	0.48	+0.2
1,808,137	-		GFF1785	0.48	-1.4
1,808,145	+		GFF1785	0.49	-1.4
1,808,180	+		GFF1785	0.52	-1.5
1,808,181	+		GFF1785	0.52	-1.0
1,808,186	+		GFF1785	0.52	-0.5
1,808,186	+		GFF1785	0.52	-1.0
1,808,186	+		GFF1785	0.52	+0.5
1,808,186	+		GFF1785	0.52	-0.2
1,808,186	+		GFF1785	0.52	+0.2
1,808,189	-		GFF1785	0.53	-2.7
1,808,189	-		GFF1785	0.53	-0.1
1,808,194	-		GFF1785	0.53	-1.4
1,808,194	-		GFF1785	0.53	+0.3
1,808,194	-		GFF1785	0.53	+0.8
1,808,194	-		GFF1785	0.53	+0.4
1,808,194	-		GFF1785	0.53	+0.4
1,808,194	-		GFF1785	0.53	-0.3
1,808,194	-		GFF1785	0.53	-0.6
1,808,194	-		GFF1785	0.53	-0.1
1,808,194	-		GFF1785	0.53	-1.3
1,808,194	-		GFF1785	0.53	-0.4
1,808,212	+		GFF1785	0.55	+0.9
1,808,225	+		GFF1785	0.56	-0.3
1,808,231	+		GFF1785	0.56	-0.4
1,808,233	-		GFF1785	0.56	-0.7
1,808,233	-		GFF1785	0.56	+0.6
1,808,240	+		GFF1785	0.57	+0.2
1,808,246	+		GFF1785	0.58	-0.3
1,808,248	-		GFF1785	0.58	+0.1
1,808,287	-		GFF1785	0.61	+0.0
1,808,294	+		GFF1785	0.62	-0.7
1,808,297	+		GFF1785	0.62	+0.3
1,808,298	-		GFF1785	0.62	-0.0
1,808,302	-		GFF1785	0.63	-0.1
1,808,323	+		GFF1785	0.64	-3.3
1,808,329	+		GFF1785	0.65	+1.2
1,808,337	-		GFF1785	0.66	-2.0
1,808,337	-		GFF1785	0.66	-0.4
1,808,339	+		GFF1785	0.66	+0.6
1,808,339	+		GFF1785	0.66	+0.9
1,808,342	-		GFF1785	0.66	-0.5
1,808,373	-		GFF1785	0.69	-0.7
1,808,404	-		GFF1785	0.72	-1.1
1,808,404	-		GFF1785	0.72	-0.6
1,808,423	-		GFF1785	0.73	+0.2
1,808,425	+		GFF1785	0.73	+0.5
1,808,425	-		GFF1785	0.73	-1.9
1,808,428	-		GFF1785	0.74	-0.4
1,808,430	+		GFF1785	0.74	+0.8
1,808,433	-		GFF1785	0.74	-1.0
1,808,438	-		GFF1785	0.75	-3.2
1,808,442	+		GFF1785	0.75	-1.5
1,808,448	+		GFF1785	0.75	-0.1
1,808,450	-		GFF1785	0.76	-0.2
1,808,461	-		GFF1785	0.77	+0.3
1,808,468	+		GFF1785	0.77	-1.5
1,808,484	+		GFF1785	0.79	-0.2
1,808,484	+		GFF1785	0.79	-1.2
1,808,492	-		GFF1785	0.79	+0.2
1,808,492	-		GFF1785	0.79	-0.1
1,808,492	-		GFF1785	0.79	-0.2
1,808,497	-		GFF1785	0.80	+0.4
1,808,508	-		GFF1785	0.81	+0.7
1,808,510	+		GFF1785	0.81	-0.1
1,808,525	-		GFF1785	0.82	-2.6
1,808,525	-		GFF1785	0.82	+1.5
1,808,539	+		GFF1785	0.83	-1.5
1,808,547	-		GFF1785	0.84	-0.9
1,808,547	-		GFF1785	0.84	-0.3
1,808,547	-		GFF1785	0.84	-0.3
1,808,547	-		GFF1785	0.84	+0.5
1,808,547	-		GFF1785	0.84	+0.3
1,808,547	-		GFF1785	0.84	-0.1
1,808,555	-		GFF1785	0.85	+0.2
1,808,596	+		GFF1785	0.89	-0.9
1,808,596	+		GFF1785	0.89	-0.7
1,808,596	+		GFF1785	0.89	+0.3
1,808,606	+		GFF1785	0.89	+0.8
1,808,606	+		GFF1785	0.89	-0.2
1,808,614	+				-0.2
1,808,614	+				-0.3
1,808,614	+				+0.8
1,808,614	+				-1.0
1,808,622	-				-0.3
1,808,649	-				+0.1
1,808,658	+				+0.4
1,808,658	+				+0.1
1,808,658	+				+0.6
1,808,658	+				-2.3
1,808,663	+				-1.3
1,808,663	+				+0.1
1,808,664	-				-0.8
1,808,666	-				-1.7
1,808,666	-				+0.4
1,808,666	-				-0.8
1,808,688	+				-0.5
1,808,696	-				+0.7
1,808,710	+				+0.6
1,808,712	-				-0.6
1,808,749	+				+0.0
1,808,770	+				+1.9
1,808,770	+				-0.0
1,808,770	+				-0.1
1,808,770	+				+0.3
1,808,770	+				+0.6
1,808,770	+				+0.5
1,808,770	+				+0.9
1,808,775	+				+0.1
1,808,778	-				-0.3
1,808,778	-				+1.4
1,808,778	-				-0.7
1,808,783	-				-1.0
1,808,848	-				-0.8
1,808,863	-				-1.8
1,808,867	+				-1.5
1,808,867	+				-0.0
1,808,908	+				-1.4
1,808,915	+				+0.1
1,808,916	-				-0.4
1,808,923	-				-1.2
1,808,923	-				+0.8
1,808,929	-				-0.2
1,808,929	-				-0.7
1,808,935	+				+0.3
1,808,939	-				-0.4
1,808,939	-				+0.5
1,808,944	-				-0.3
1,808,946	+				-0.1
1,808,946	+				+0.2
1,808,949	-				+1.3
1,808,979	+		GFF1786	0.11	-0.4
1,808,986	+		GFF1786	0.12	+0.8
1,808,986	+		GFF1786	0.12	+0.4
1,808,993	+		GFF1786	0.13	-0.6
1,808,994	-		GFF1786	0.13	+0.1
1,809,001	+		GFF1786	0.15	-3.1
1,809,005	+		GFF1786	0.15	-0.2
1,809,010	+		GFF1786	0.16	+1.0
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1,809,712	-				+0.0
1,809,722	+				-2.3