Strain Fitness in Sphingobium sp. HT1-2 around GFF1733

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,758,497	+				+0.1
1,758,497	+				-0.1
1,758,497	+				-1.5
1,758,497	+				-0.1
1,758,497	+				-1.7
1,758,505	-				-0.4
1,758,505	-				-1.0
1,758,505	-				-1.1
1,758,505	-				-0.0
1,758,507	+				-0.8
1,758,509	+				-1.3
1,758,530	+				+0.5
1,758,538	-				-0.2
1,758,540	+				+1.4
1,758,540	+				+0.3
1,758,540	+				-0.2
1,758,540	+				-1.6
1,758,540	+				-1.1
1,758,548	-				-0.2
1,758,548	-				+1.6
1,758,552	+				-0.4
1,758,561	-				-1.4
1,758,564	-				-2.6
1,758,569	-				-1.5
1,758,579	+				-0.9
1,758,621	-				+0.2
1,758,621	-				-0.3
1,758,640	+				-0.9
1,758,640	+				+0.7
1,758,640	+				+0.3
1,758,647	+				-0.3
1,758,653	+				+1.0
1,758,666	+		GFF1732	0.11	+0.6
1,758,678	-		GFF1732	0.13	-0.8
1,758,683	-		GFF1732	0.13	+0.8
1,758,688	-		GFF1732	0.14	+1.1
1,758,712	+		GFF1732	0.17	+1.0
1,758,727	+		GFF1732	0.19	-1.7
1,758,734	+		GFF1732	0.19	+0.0
1,758,739	+		GFF1732	0.20	-0.5
1,758,740	+		GFF1732	0.20	+0.3
1,758,752	-		GFF1732	0.22	-0.8
1,758,752	-		GFF1732	0.22	-1.7
1,758,839	-		GFF1732	0.32	-1.3
1,758,864	-		GFF1732	0.35	+2.0
1,758,875	+		GFF1732	0.36	+0.2
1,758,933	+		GFF1732	0.43	+0.5
1,758,942	+		GFF1732	0.44	-0.6
1,758,952	+		GFF1732	0.45	-2.4
1,758,977	+		GFF1732	0.48	+0.3
1,758,985	-		GFF1732	0.49	-0.6
1,758,985	-		GFF1732	0.49	+1.0
1,758,987	+		GFF1732	0.50	-1.6
1,758,990	-		GFF1732	0.50	-1.1
1,758,995	-		GFF1732	0.50	-0.2
1,759,005	-		GFF1732	0.52	-0.9
1,759,005	-		GFF1732	0.52	-1.0
1,759,006	+		GFF1732	0.52	+0.3
1,759,101	+		GFF1732	0.63	-0.3
1,759,101	+		GFF1732	0.63	-1.6
1,759,108	+		GFF1732	0.64	-0.8
1,759,108	+		GFF1732	0.64	+0.1
1,759,108	+		GFF1732	0.64	-1.5
1,759,108	+		GFF1732	0.64	-2.7
1,759,108	+		GFF1732	0.64	-0.3
1,759,128	+		GFF1732	0.66	+0.5
1,759,146	-		GFF1732	0.68	+1.5
1,759,146	-		GFF1732	0.68	-0.5
1,759,189	+		GFF1732	0.74	-0.2
1,759,189	+		GFF1732	0.74	-0.5
1,759,211	+		GFF1732	0.76	+0.1
1,759,224	-		GFF1732	0.78	-0.6
1,759,386	+				-0.5
1,759,388	+				+0.7
1,759,408	+				-0.2
1,759,487	+				-0.6
1,759,495	-				+0.2
1,759,495	-				-0.0
1,759,495	-				+0.0
1,759,495	-				-0.3
1,759,501	+				+0.0
1,759,501	+				+0.7
1,759,501	+				-1.5
1,759,501	+				-0.4
1,759,501	+				+1.3
1,759,509	-				-0.1
1,759,509	-				+0.6
1,759,509	-				-0.9
1,759,511	+				-1.4
1,759,512	+				-2.1
1,759,522	+				-1.1
1,759,522	+				+0.6
1,759,527	+				+0.3
1,759,553	-				+0.6
1,759,563	-				+0.3
1,759,602	-		GFF1733	0.11	-1.0
1,759,612	-		GFF1733	0.12	-1.5
1,759,614	-		GFF1733	0.12	-0.2
1,759,633	-		GFF1733	0.14	+1.0
1,759,634	+		GFF1733	0.14	-1.2
1,759,638	-		GFF1733	0.15	-1.1
1,759,642	-		GFF1733	0.15	+0.2
1,759,642	-		GFF1733	0.15	-1.5
1,759,705	+		GFF1733	0.21	+0.4
1,759,705	+		GFF1733	0.21	-2.3
1,759,705	+		GFF1733	0.21	+0.3
1,759,718	+		GFF1733	0.22	-0.1
1,759,728	+		GFF1733	0.23	-0.9
1,759,728	+		GFF1733	0.23	-0.6
1,759,728	+		GFF1733	0.23	-1.4
1,759,728	+		GFF1733	0.23	+0.9
1,759,728	+		GFF1733	0.23	-1.1
1,759,731	-		GFF1733	0.24	+0.3
1,759,736	-		GFF1733	0.24	-0.5
1,759,736	-		GFF1733	0.24	+1.6
1,759,736	-		GFF1733	0.24	-1.6
1,759,736	-		GFF1733	0.24	-0.3
1,759,743	+		GFF1733	0.25	+1.2
1,759,761	-		GFF1733	0.26	+0.6
1,759,801	+		GFF1733	0.30	+0.8
1,759,801	+		GFF1733	0.30	-0.6
1,759,809	-		GFF1733	0.31	-1.1
1,759,833	+		GFF1733	0.33	-0.8
1,759,835	+		GFF1733	0.33	-0.5
1,759,845	+		GFF1733	0.34	+0.1
1,759,857	-		GFF1733	0.36	-0.9
1,759,867	+		GFF1733	0.36	-2.4
1,759,871	+		GFF1733	0.37	-0.9
1,759,902	+		GFF1733	0.40	-0.1
1,759,921	-		GFF1733	0.42	-0.4
1,759,946	+		GFF1733	0.44	-2.0
1,759,968	-		GFF1733	0.46	+0.3
1,760,000	-		GFF1733	0.49	-0.8
1,760,002	-		GFF1733	0.49	+0.7
1,760,014	+		GFF1733	0.50	+0.1
1,760,022	-		GFF1733	0.51	-0.4
1,760,040	-		GFF1733	0.53	-0.8
1,760,051	+		GFF1733	0.54	-1.2
1,760,051	+		GFF1733	0.54	+0.3
1,760,052	+		GFF1733	0.54	-0.4
1,760,059	-		GFF1733	0.55	-0.1
1,760,085	+		GFF1733	0.57	+0.4
1,760,137	-		GFF1733	0.62	-1.5
1,760,199	+		GFF1733	0.68	-0.0
1,760,199	+		GFF1733	0.68	-0.1
1,760,199	+		GFF1733	0.68	-2.2
1,760,199	+		GFF1733	0.68	-1.4
1,760,201	+		GFF1733	0.68	-0.9
1,760,201	+		GFF1733	0.68	+0.9
1,760,201	+		GFF1733	0.68	-0.5
1,760,201	+		GFF1733	0.68	+0.3
1,760,201	+		GFF1733	0.68	+0.7
1,760,201	+		GFF1733	0.68	-1.1
1,760,207	-		GFF1733	0.69	+1.4
1,760,207	-		GFF1733	0.69	-0.3
1,760,209	-		GFF1733	0.69	+1.0
1,760,209	-		GFF1733	0.69	+0.5
1,760,231	-		GFF1733	0.71	-0.0
1,760,235	+		GFF1733	0.72	-1.9
1,760,235	+		GFF1733	0.72	-0.6
1,760,243	-		GFF1733	0.72	-0.2
1,760,248	-		GFF1733	0.73	-0.9
1,760,256	+		GFF1733	0.74	+0.7
1,760,259	+		GFF1733	0.74	-0.1
1,760,270	+		GFF1733	0.75	-0.0
1,760,270	+		GFF1733	0.75	-0.8
1,760,278	-		GFF1733	0.76	-0.2
1,760,278	-		GFF1733	0.76	+0.1
1,760,278	-		GFF1733	0.76	+0.2
1,760,279	+		GFF1733	0.76	-0.3
1,760,287	-		GFF1733	0.76	+0.5
1,760,287	-		GFF1733	0.76	+0.5
1,760,297	+		GFF1733	0.77	-1.3
1,760,311	-		GFF1733	0.79	+0.1
1,760,338	+		GFF1733	0.81	+0.5
1,760,346	-		GFF1733	0.82	+0.3
1,760,362	-		GFF1733	0.84	-0.6
1,760,366	+		GFF1733	0.84	-0.4
1,760,546	-				+0.5
1,760,551	+				-2.6
1,760,557	-				-0.4
1,760,583	-				+0.4
1,760,627	+				-1.8
1,760,627	+				-0.9
1,760,627	-				-1.4
1,760,635	-				-0.8
1,760,723	-				-0.5
1,760,729	+				-1.9
1,760,729	+				-2.3
1,760,729	+				+1.5
1,760,735	+		GFF1734	0.10	-0.2
1,760,737	-		GFF1734	0.11	-1.6
1,760,737	-		GFF1734	0.11	+0.0
1,760,737	-		GFF1734	0.11	-1.5
1,760,737	-		GFF1734	0.11	-0.3
1,760,737	-		GFF1734	0.11	-1.2
1,760,740	+		GFF1734	0.11	-0.5
1,760,747	-		GFF1734	0.12	-0.0
1,760,748	-		GFF1734	0.12	-1.9
1,760,752	-		GFF1734	0.12	+0.8
1,760,752	-		GFF1734	0.12	-1.1
1,760,775	+		GFF1734	0.15	+0.6
1,760,783	+		GFF1734	0.16	-0.9
1,760,791	-		GFF1734	0.17	-0.1
1,760,793	+		GFF1734	0.18	+0.4
1,760,802	+		GFF1734	0.19	-0.8
1,760,866	+		GFF1734	0.27	-0.5
1,760,879	-		GFF1734	0.28	-1.1
1,760,884	-		GFF1734	0.29	+0.2
1,760,897	+		GFF1734	0.31	-0.7
1,760,897	+		GFF1734	0.31	-0.3
1,760,897	+		GFF1734	0.31	+1.0
1,760,897	+		GFF1734	0.31	-1.5
1,760,897	+		GFF1734	0.31	+0.1
1,760,897	+		GFF1734	0.31	+0.7
1,760,897	+		GFF1734	0.31	+0.2
1,760,897	+		GFF1734	0.31	-1.4
1,760,897	+		GFF1734	0.31	+0.5
1,760,897	+		GFF1734	0.31	+1.1
1,760,897	+		GFF1734	0.31	-0.6
1,760,905	-		GFF1734	0.32	-1.1
1,760,905	-		GFF1734	0.32	-0.8
1,760,905	-		GFF1734	0.32	+0.0
1,760,905	-		GFF1734	0.32	-0.3
1,760,905	-		GFF1734	0.32	-0.4
1,760,917	-		GFF1734	0.33	+0.5
1,760,923	+		GFF1734	0.34	-2.1
1,760,923	+		GFF1734	0.34	-0.2
1,760,926	-		GFF1734	0.34	+0.6
1,760,931	-		GFF1734	0.35	+0.3
1,760,935	+		GFF1734	0.35	-0.1
1,760,936	-		GFF1734	0.35	-0.6
1,760,940	+		GFF1734	0.36	-0.9
1,760,948	-		GFF1734	0.37	+0.7
1,760,952	+		GFF1734	0.37	-0.7
1,760,998	+		GFF1734	0.43	-1.3
1,760,998	+		GFF1734	0.43	+0.3
1,760,998	+		GFF1734	0.43	-0.5
1,760,998	+		GFF1734	0.43	+0.7
1,760,998	+		GFF1734	0.43	+1.2
1,760,998	+		GFF1734	0.43	-0.1
1,760,998	+		GFF1734	0.43	-1.3
1,760,998	+		GFF1734	0.43	-0.8
1,760,998	+		GFF1734	0.43	-0.3
1,761,001	-		GFF1734	0.44	+0.3
1,761,003	+		GFF1734	0.44	-2.4
1,761,006	-		GFF1734	0.44	+0.4
1,761,006	-		GFF1734	0.44	-1.1
1,761,006	-		GFF1734	0.44	+0.4
1,761,006	-		GFF1734	0.44	-0.8
1,761,014	+		GFF1734	0.45	-0.8
1,761,014	+		GFF1734	0.45	-0.7
1,761,014	+		GFF1734	0.45	-2.2
1,761,016	-		GFF1734	0.45	-1.9
1,761,016	-		GFF1734	0.45	+0.4
1,761,022	-		GFF1734	0.46	-0.4
1,761,022	-		GFF1734	0.46	-0.5
1,761,022	-		GFF1734	0.46	+1.4
1,761,022	-		GFF1734	0.46	-0.2
1,761,022	-		GFF1734	0.46	+0.5
1,761,022	-		GFF1734	0.46	-0.3
1,761,022	-		GFF1734	0.46	+1.0
1,761,022	-		GFF1734	0.46	+0.5
1,761,022	-		GFF1734	0.46	-0.6
1,761,024	+		GFF1734	0.46	-1.3
1,761,024	-		GFF1734	0.46	+0.5
1,761,026	+		GFF1734	0.47	-0.6
1,761,026	+		GFF1734	0.47	-1.1
1,761,026	-		GFF1734	0.47	+0.3
1,761,026	-		GFF1734	0.47	+0.8
1,761,029	-		GFF1734	0.47	-0.1
1,761,034	-		GFF1734	0.48	+0.7
1,761,036	+		GFF1734	0.48	-0.2
1,761,036	+		GFF1734	0.48	+1.2
1,761,036	+		GFF1734	0.48	+0.3
1,761,036	+		GFF1734	0.48	-0.2
1,761,036	+		GFF1734	0.48	-1.7
1,761,039	-		GFF1734	0.48	-0.0
1,761,044	-		GFF1734	0.49	-0.0
1,761,044	-		GFF1734	0.49	+0.2
1,761,044	-		GFF1734	0.49	+0.1
1,761,056	+		GFF1734	0.51	-0.6
1,761,075	+		GFF1734	0.53	-0.2
1,761,075	+		GFF1734	0.53	-0.2
1,761,077	-		GFF1734	0.53	-1.6
1,761,095	+		GFF1734	0.55	+1.3
1,761,101	+		GFF1734	0.56	-0.4
1,761,106	+		GFF1734	0.57	+2.3
1,761,139	+		GFF1734	0.61	+0.6
1,761,140	-		GFF1734	0.61	-0.3
1,761,142	+		GFF1734	0.61	-1.3
1,761,150	-		GFF1734	0.62	-0.3
1,761,150	-		GFF1734	0.62	-0.2
1,761,160	+		GFF1734	0.64	-0.4
1,761,170	+		GFF1734	0.65	+1.4
1,761,170	+		GFF1734	0.65	-1.9
1,761,175	+		GFF1734	0.65	-0.3
1,761,175	+		GFF1734	0.65	+0.2
1,761,175	+		GFF1734	0.65	-0.3
1,761,178	-		GFF1734	0.66	+0.4
1,761,183	-		GFF1734	0.66	+1.0
1,761,183	-		GFF1734	0.66	-0.6
1,761,183	-		GFF1734	0.66	-0.6
1,761,184	-		GFF1734	0.67	+0.5
1,761,193	+		GFF1734	0.68	+0.9
1,761,205	-		GFF1734	0.69	-1.1
1,761,205	-		GFF1734	0.69	+0.5
1,761,209	+		GFF1734	0.70	-0.5
1,761,263	-		GFF1734	0.76	+0.4
1,761,264	+		GFF1734	0.77	+0.9
1,761,264	+		GFF1734	0.77	-1.3
1,761,264	+		GFF1734	0.77	-1.3
1,761,272	-		GFF1734	0.78	-1.0
1,761,277	-		GFF1734	0.78	+0.2
1,761,308	+		GFF1734	0.82	+0.1
1,761,308	+		GFF1734	0.82	-0.4
1,761,308	+		GFF1734	0.82	-0.2
1,761,308	+		GFF1734	0.82	-0.4
1,761,308	+		GFF1734	0.82	-0.1
1,761,308	+		GFF1734	0.82	+0.5
1,761,308	+		GFF1734	0.82	-1.3
1,761,308	+		GFF1734	0.82	-0.2
1,761,308	+		GFF1734	0.82	+0.7
1,761,308	+		GFF1734	0.82	+0.6
1,761,308	+		GFF1734	0.82	-1.2
1,761,308	+		GFF1734	0.82	+0.4
1,761,314	+		GFF1734	0.83	+0.2
1,761,314	+		GFF1734	0.83	-0.9
1,761,316	-		GFF1734	0.83	+0.1
1,761,316	-		GFF1734	0.83	-0.5
1,761,316	-		GFF1734	0.83	-2.3
1,761,316	-		GFF1734	0.83	-1.6
1,761,316	-		GFF1734	0.83	+0.8
1,761,316	-		GFF1734	0.83	-1.8
1,761,316	-		GFF1734	0.83	-1.2
1,761,316	-		GFF1734	0.83	-0.9
1,761,322	-		GFF1734	0.84	+1.1
1,761,322	-		GFF1734	0.84	+0.1
1,761,333	+		GFF1734	0.85	-0.3
1,761,341	-		GFF1734	0.86	-0.2
1,761,346	+		GFF1734	0.87	+0.1
1,761,359	+		GFF1734	0.88	-1.1
1,761,359	+		GFF1734	0.88	+1.0
1,761,359	+		GFF1734	0.88	-0.6
1,761,384	-				+0.7
1,761,403	+				-0.7
1,761,404	-				-2.2
1,761,404	-				-0.6
1,761,404	-				-1.2
1,761,405	+				-2.9
1,761,405	+				-0.2
1,761,410	+				-0.3
1,761,410	+				-1.0
1,761,410	+				+0.2
1,761,410	+				+1.0
1,761,410	+				-0.2
1,761,413	-				-0.1
1,761,413	-				-0.4
1,761,413	-				-0.6
1,761,413	-				-1.5
1,761,418	-				-0.4
1,761,418	-				-1.1
1,761,418	-				-0.2
1,761,418	-				+0.6
1,761,418	-				-0.3
1,761,454	+				+0.8
1,761,455	+				-1.5
1,761,461	+				+0.1
1,761,475	-				-1.0
1,761,484	+				-0.4
1,761,501	+				+0.4
1,761,504	-				+0.8
1,761,506	+				+0.4
1,761,506	+				+0.5
1,761,506	+				+0.5
1,761,506	+				-1.2
1,761,506	+				-1.8
1,761,509	-				-0.2
1,761,509	-				+1.1
1,761,509	-				-0.4
1,761,514	-				-0.3
1,761,533	-				-0.5