Strain Fitness in Sphingobium sp. HT1-2 around GFF1712

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,735,497	+				-1.1
1,735,499	+				-0.2
1,735,559	+				-1.4
1,735,567	-				+0.8
1,735,624	-				+0.8
1,735,650	+				-0.9
1,735,658	-				+0.2
1,735,658	-				-0.4
1,735,658	-				-0.2
1,735,660	+				-0.1
1,735,660	+				-0.6
1,735,663	-				-1.4
1,735,668	-				-0.2
1,735,687	+				-0.2
1,735,690	-				+0.6
1,735,736	+				-0.9
1,735,736	-				-1.3
1,735,744	-				-0.6
1,735,789	-				-0.4
1,735,803	+				-0.3
1,735,814	+				-0.1
1,735,814	+				+2.0
1,735,814	+				+0.0
1,735,814	+				+0.2
1,735,816	+				-1.0
1,735,816	+				-0.2
1,735,822	-				-0.1
1,735,822	-				+0.4
1,735,824	-		GFF1712	0.10	-0.1
1,735,842	-		GFF1712	0.11	+0.4
1,735,852	+		GFF1712	0.12	-1.7
1,735,908	+		GFF1712	0.16	+0.6
1,735,910	-		GFF1712	0.16	-1.4
1,735,913	+		GFF1712	0.16	-0.2
1,735,928	+		GFF1712	0.18	+1.3
1,735,928	+		GFF1712	0.18	+0.5
1,735,928	+		GFF1712	0.18	-1.0
1,735,928	+		GFF1712	0.18	-0.0
1,735,928	+		GFF1712	0.18	-0.6
1,735,928	+		GFF1712	0.18	-2.9
1,735,928	+		GFF1712	0.18	+0.7
1,735,928	+		GFF1712	0.18	-0.3
1,735,931	-		GFF1712	0.18	-1.2
1,735,931	-		GFF1712	0.18	-1.2
1,735,931	-		GFF1712	0.18	-1.5
1,735,931	-		GFF1712	0.18	-0.0
1,735,936	-		GFF1712	0.18	+0.4
1,735,936	-		GFF1712	0.18	+0.7
1,735,936	-		GFF1712	0.18	+0.1
1,735,936	-		GFF1712	0.18	-1.4
1,735,936	-		GFF1712	0.18	+0.1
1,735,936	-		GFF1712	0.18	+0.6
1,735,938	+		GFF1712	0.18	+1.0
1,735,938	+		GFF1712	0.18	-0.4
1,735,938	+		GFF1712	0.18	+0.8
1,735,943	+		GFF1712	0.19	+0.8
1,735,943	+		GFF1712	0.19	+0.3
1,735,948	-		GFF1712	0.19	-2.2
1,735,951	-		GFF1712	0.19	-1.4
1,735,989	+		GFF1712	0.22	-0.3
1,735,989	+		GFF1712	0.22	+0.1
1,736,015	-		GFF1712	0.24	+0.9
1,736,016	-		GFF1712	0.24	-1.3
1,736,032	-		GFF1712	0.25	+0.7
1,736,048	+		GFF1712	0.26	-0.1
1,736,048	+		GFF1712	0.26	-0.2
1,736,056	-		GFF1712	0.27	+0.4
1,736,056	-		GFF1712	0.27	+0.8
1,736,060	-		GFF1712	0.27	-0.2
1,736,070	+		GFF1712	0.28	+1.0
1,736,112	-		GFF1712	0.31	-0.2
1,736,133	-		GFF1712	0.32	-2.2
1,736,133	-		GFF1712	0.32	+0.6
1,736,133	-		GFF1712	0.32	-1.0
1,736,143	-		GFF1712	0.33	-0.1
1,736,143	-		GFF1712	0.33	+0.6
1,736,152	+		GFF1712	0.34	-0.2
1,736,152	+		GFF1712	0.34	-0.7
1,736,152	+		GFF1712	0.34	+0.5
1,736,160	-		GFF1712	0.34	-0.8
1,736,163	+		GFF1712	0.34	-0.5
1,736,173	-		GFF1712	0.35	+0.2
1,736,186	+		GFF1712	0.36	-0.6
1,736,186	-		GFF1712	0.36	-1.0
1,736,194	-		GFF1712	0.37	+0.9
1,736,242	+		GFF1712	0.40	-0.4
1,736,259	+		GFF1712	0.41	+0.9
1,736,341	+		GFF1712	0.47	-1.8
1,736,341	+		GFF1712	0.47	+0.7
1,736,349	-		GFF1712	0.48	-0.9
1,736,349	-		GFF1712	0.48	-1.4
1,736,349	-		GFF1712	0.48	+0.1
1,736,351	-		GFF1712	0.48	+0.4
1,736,370	+		GFF1712	0.49	-0.6
1,736,380	-		GFF1712	0.50	-0.7
1,736,380	-		GFF1712	0.50	+0.3
1,736,395	-		GFF1712	0.51	+0.9
1,736,432	+		GFF1712	0.54	+1.4
1,736,440	-		GFF1712	0.54	+0.3
1,736,449	-		GFF1712	0.55	-0.7
1,736,507	-		GFF1712	0.59	-0.8
1,736,538	+		GFF1712	0.62	+1.3
1,736,538	+		GFF1712	0.62	+1.4
1,736,543	+		GFF1712	0.62	-1.2
1,736,548	+		GFF1712	0.62	-0.4
1,736,551	-		GFF1712	0.62	-1.3
1,736,551	-		GFF1712	0.62	-0.2
1,736,551	-		GFF1712	0.62	+0.1
1,736,551	-		GFF1712	0.62	+1.0
1,736,551	-		GFF1712	0.62	-1.2
1,736,551	-		GFF1712	0.62	-2.3
1,736,556	-		GFF1712	0.63	-0.1
1,736,558	-		GFF1712	0.63	-1.3
1,736,623	-		GFF1712	0.68	+1.0
1,736,636	-		GFF1712	0.69	-0.1
1,736,657	+		GFF1712	0.70	+0.3
1,736,665	-		GFF1712	0.71	-0.4
1,736,672	-		GFF1712	0.71	+0.4
1,736,675	+		GFF1712	0.71	-1.4
1,736,698	+		GFF1712	0.73	+1.0
1,736,706	+		GFF1712	0.74	+0.7
1,736,720	+		GFF1712	0.75	+0.6
1,736,720	+		GFF1712	0.75	-0.9
1,736,720	+		GFF1712	0.75	+0.4
1,736,723	-		GFF1712	0.75	+0.2
1,736,728	-		GFF1712	0.75	-0.3
1,736,728	-		GFF1712	0.75	+0.6
1,736,728	-		GFF1712	0.75	+0.9
1,736,742	+		GFF1712	0.76	-1.2
1,736,750	+		GFF1712	0.77	-0.6
1,736,750	+		GFF1712	0.77	+0.3
1,736,755	+		GFF1712	0.77	+0.2
1,736,755	+		GFF1712	0.77	-1.5
1,736,755	+		GFF1712	0.77	-0.4
1,736,763	-		GFF1712	0.78	-2.0
1,736,763	-		GFF1712	0.78	-1.6
1,736,763	-		GFF1712	0.78	+1.4
1,736,774	-		GFF1712	0.79	-1.4
1,736,774	-		GFF1712	0.79	-1.7
1,736,829	+		GFF1712	0.83	-1.8
1,736,838	+		GFF1712	0.83	+1.4
1,736,844	+		GFF1712	0.84	+1.6
1,736,863	+		GFF1712	0.85	+0.1
1,736,884	-		GFF1712	0.87	+1.0
1,736,897	+		GFF1712	0.87	-0.4
1,736,897	+		GFF1712	0.87	+0.4
1,736,906	-		GFF1712	0.88	-0.7
1,736,910	+		GFF1712	0.88	+0.2
1,736,943	-				-0.6
1,736,971	-				+0.6
1,736,979	+				-0.3
1,736,991	-				-1.6
1,736,994	-				-0.0
1,737,002	+				-2.4
1,737,002	+				+0.8
1,737,002	+				-0.7
1,737,010	-				+0.0
1,737,015	-				-2.2
1,737,019	+				+0.5
1,737,025	+				-0.0
1,737,028	-				+0.2
1,737,033	-				-0.4
1,737,033	-				-0.3
1,737,039	-				-0.5
1,737,041	+				-0.5
1,737,064	+				-1.2
1,737,072	-				+0.1
1,737,124	+				+0.1
1,737,127	-				-0.3
1,737,134	+				+0.7
1,737,134	+				-0.1
1,737,142	-				+0.8
1,737,142	-				-0.8
1,737,142	-				+0.1
1,737,144	+				+0.1
1,737,155	-				+0.7
1,737,182	-		GFF1713	0.11	-1.4
1,737,184	+		GFF1713	0.11	+0.3
1,737,192	-		GFF1713	0.12	+0.0
1,737,192	-		GFF1713	0.12	-1.3
1,737,193	-		GFF1713	0.12	-1.4
1,737,196	+		GFF1713	0.12	-0.0
1,737,204	-		GFF1713	0.13	-0.2
1,737,218	+		GFF1713	0.15	-0.6
1,737,218	-		GFF1713	0.15	+0.0
1,737,218	-		GFF1713	0.15	+0.8
1,737,224	+		GFF1713	0.15	+0.7
1,737,226	-		GFF1713	0.15	+1.5
1,737,232	-		GFF1713	0.16	+0.3
1,737,232	-		GFF1713	0.16	-1.8
1,737,232	-		GFF1713	0.16	+0.7
1,737,234	-		GFF1713	0.16	+0.1
1,737,234	-		GFF1713	0.16	-1.4
1,737,292	+		GFF1713	0.22	+0.3
1,737,307	+		GFF1713	0.23	-1.2
1,737,315	+		GFF1713	0.24	-0.5
1,737,315	+		GFF1713	0.24	+1.2
1,737,315	+		GFF1713	0.24	-2.2
1,737,315	+		GFF1713	0.24	-1.7
1,737,315	+		GFF1713	0.24	-1.5
1,737,315	-		GFF1713	0.24	+0.1
1,737,323	-		GFF1713	0.25	-0.8
1,737,323	-		GFF1713	0.25	-0.4
1,737,323	-		GFF1713	0.25	-0.7
1,737,323	-		GFF1713	0.25	-0.8
1,737,323	-		GFF1713	0.25	+0.6
1,737,323	-		GFF1713	0.25	+0.1
1,737,323	-		GFF1713	0.25	+2.2
1,737,323	-		GFF1713	0.25	+0.8
1,737,325	+		GFF1713	0.25	-0.5
1,737,325	+		GFF1713	0.25	-1.2
1,737,333	-		GFF1713	0.26	+1.0
1,737,335	+		GFF1713	0.26	-0.5
1,737,341	-		GFF1713	0.26	-0.9
1,737,352	+		GFF1713	0.27	-0.2
1,737,354	+		GFF1713	0.28	+0.6
1,737,362	-		GFF1713	0.28	+1.1
1,737,362	-		GFF1713	0.28	-0.1
1,737,374	+		GFF1713	0.29	+1.0
1,737,383	-		GFF1713	0.30	-0.4
1,737,400	+		GFF1713	0.32	-3.1
1,737,400	+		GFF1713	0.32	+0.1
1,737,400	+		GFF1713	0.32	+0.2
1,737,400	+		GFF1713	0.32	+0.4
1,737,400	+		GFF1713	0.32	-1.9
1,737,400	+		GFF1713	0.32	+0.5
1,737,400	+		GFF1713	0.32	+0.4
1,737,400	+		GFF1713	0.32	+0.2
1,737,400	+		GFF1713	0.32	-1.4
1,737,400	+		GFF1713	0.32	-1.5
1,737,400	+		GFF1713	0.32	-0.9
1,737,400	+		GFF1713	0.32	-1.6
1,737,400	+		GFF1713	0.32	-1.0
1,737,400	+		GFF1713	0.32	-0.9
1,737,400	+		GFF1713	0.32	+0.4
1,737,400	+		GFF1713	0.32	-1.3
1,737,400	+		GFF1713	0.32	-0.7
1,737,400	+		GFF1713	0.32	-1.2
1,737,400	+		GFF1713	0.32	-1.4
1,737,400	+		GFF1713	0.32	+0.8
1,737,400	+		GFF1713	0.32	-2.4
1,737,400	+		GFF1713	0.32	+1.2
1,737,408	-		GFF1713	0.33	+0.3
1,737,408	-		GFF1713	0.33	+1.4
1,737,408	-		GFF1713	0.33	-0.2
1,737,408	-		GFF1713	0.33	+0.8
1,737,408	-		GFF1713	0.33	-0.1
1,737,408	-		GFF1713	0.33	+0.4
1,737,408	-		GFF1713	0.33	-0.3
1,737,408	-		GFF1713	0.33	+0.6
1,737,408	-		GFF1713	0.33	+0.3
1,737,408	-		GFF1713	0.33	+0.2
1,737,408	-		GFF1713	0.33	+0.5
1,737,408	-		GFF1713	0.33	-0.2
1,737,408	-		GFF1713	0.33	-0.7
1,737,408	-		GFF1713	0.33	+0.1
1,737,408	-		GFF1713	0.33	-0.0
1,737,408	-		GFF1713	0.33	+1.3
1,737,408	-		GFF1713	0.33	+0.4
1,737,408	-		GFF1713	0.33	-1.4
1,737,408	-		GFF1713	0.33	+0.0
1,737,408	-		GFF1713	0.33	-1.8
1,737,408	-		GFF1713	0.33	+1.1
1,737,408	-		GFF1713	0.33	+0.3
1,737,408	-		GFF1713	0.33	+0.4
1,737,408	-		GFF1713	0.33	-0.2
1,737,408	-		GFF1713	0.33	-0.2
1,737,408	-		GFF1713	0.33	-0.7
1,737,411	+		GFF1713	0.33	+1.1
1,737,411	+		GFF1713	0.33	-0.6
1,737,411	+		GFF1713	0.33	+1.0
1,737,411	+		GFF1713	0.33	-0.3
1,737,411	+		GFF1713	0.33	+0.2
1,737,419	-		GFF1713	0.34	-0.2
1,737,419	-		GFF1713	0.34	+1.3
1,737,419	-		GFF1713	0.34	-0.6
1,737,419	-		GFF1713	0.34	-0.1
1,737,419	-		GFF1713	0.34	+0.5
1,737,419	-		GFF1713	0.34	+0.5
1,737,419	-		GFF1713	0.34	+1.9
1,737,485	+		GFF1713	0.40	-1.2
1,737,493	-		GFF1713	0.41	-1.5
1,737,495	+		GFF1713	0.41	+0.1
1,737,498	-		GFF1713	0.41	+0.9
1,737,503	-		GFF1713	0.42	-0.9
1,737,528	+		GFF1713	0.44	-1.3
1,737,571	+		GFF1713	0.48	+0.2
1,737,578	+		GFF1713	0.49	+0.1
1,737,586	-		GFF1713	0.50	+0.6
1,737,586	-		GFF1713	0.50	-1.5
1,737,586	-		GFF1713	0.50	-0.8
1,737,591	+		GFF1713	0.50	-0.5
1,737,599	-		GFF1713	0.51	-1.9
1,737,609	+		GFF1713	0.52	-2.2
1,737,616	+		GFF1713	0.53	+0.4
1,737,616	+		GFF1713	0.53	+0.2
1,737,616	+		GFF1713	0.53	+0.4
1,737,617	-		GFF1713	0.53	-0.1
1,737,624	-		GFF1713	0.54	-0.2
1,737,624	-		GFF1713	0.54	-0.4
1,737,624	-		GFF1713	0.54	-0.6
1,737,624	-		GFF1713	0.54	+0.6
1,737,627	+		GFF1713	0.54	+0.3
1,737,627	+		GFF1713	0.54	-0.7
1,737,657	+		GFF1713	0.57	-2.1
1,737,673	+		GFF1713	0.58	-0.5
1,737,706	-		GFF1713	0.61	-0.2
1,737,751	+		GFF1713	0.66	+0.5
1,737,751	+		GFF1713	0.66	-0.4
1,737,766	+		GFF1713	0.67	-2.0
1,737,766	-		GFF1713	0.67	-0.6
1,737,766	-		GFF1713	0.67	-0.3
1,737,790	-		GFF1713	0.69	-0.5
1,737,797	-		GFF1713	0.70	+0.9
1,737,819	-		GFF1713	0.72	-0.0
1,737,829	+		GFF1713	0.73	+0.1
1,737,829	-		GFF1713	0.73	-0.9
1,737,832	-		GFF1713	0.73	+0.3
1,737,842	+		GFF1713	0.74	+1.2
1,737,842	+		GFF1713	0.74	-0.3
1,737,842	+		GFF1713	0.74	-2.3
1,737,842	+		GFF1713	0.74	-2.2
1,737,842	+		GFF1713	0.74	+0.3
1,737,842	+		GFF1713	0.74	-0.1
1,737,842	+		GFF1713	0.74	+0.7
1,737,842	+		GFF1713	0.74	-2.1
1,737,842	+		GFF1713	0.74	-1.6
1,737,842	+		GFF1713	0.74	-1.3
1,737,842	+		GFF1713	0.74	-1.5
1,737,842	+		GFF1713	0.74	+0.1
1,737,842	+		GFF1713	0.74	-1.3
1,737,842	+		GFF1713	0.74	+0.4
1,737,842	-		GFF1713	0.74	-1.1
1,737,850	-		GFF1713	0.75	+1.0
1,737,850	-		GFF1713	0.75	-0.1
1,737,850	-		GFF1713	0.75	+0.9
1,737,850	-		GFF1713	0.75	+0.1
1,737,850	-		GFF1713	0.75	-2.0
1,737,850	-		GFF1713	0.75	+0.6
1,737,850	-		GFF1713	0.75	+0.5
1,737,850	-		GFF1713	0.75	+0.2
1,737,850	-		GFF1713	0.75	+0.5
1,737,850	-		GFF1713	0.75	+0.5
1,737,850	-		GFF1713	0.75	-0.9
1,737,850	-		GFF1713	0.75	-1.2
1,737,850	-		GFF1713	0.75	+0.5
1,737,850	-		GFF1713	0.75	+0.0
1,737,850	-		GFF1713	0.75	+0.4
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1,738,009	-				+0.2
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1,738,059	+				-2.1
1,738,062	-				-2.6