Strain Fitness in Sphingobium sp. HT1-2 around GFF1666

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,694,093	+		GFF1664	0.86	-1.0
1,694,099	+		GFF1664	0.87	-0.4
1,694,101	+		GFF1664	0.87	-0.8
1,694,118	+		GFF1664	0.88	-1.9
1,694,122	+		GFF1664	0.89	+0.1
1,694,127	+		GFF1664	0.89	+0.2
1,694,135	-		GFF1664	0.90	-0.4
1,694,145	-				-0.2
1,694,145	-				+0.3
1,694,176	+				-1.5
1,694,176	+				-0.1
1,694,179	-				-0.7
1,694,184	-				-0.8
1,694,184	-				+0.5
1,694,184	-				+0.7
1,694,191	-				-2.3
1,694,205	-				+0.4
1,694,210	+				-0.7
1,694,210	+				-0.6
1,694,225	+				-0.7
1,694,225	+				-1.4
1,694,233	-				+0.4
1,694,243	-				-1.4
1,694,308	+				-0.6
1,694,320	-				-0.5
1,694,322	+				-1.6
1,694,340	+				-0.3
1,694,340	+				+0.3
1,694,341	+				-0.1
1,694,348	-				+0.0
1,694,366	+				+0.1
1,694,378	+				-0.4
1,694,378	+				-1.5
1,694,378	+				-0.5
1,694,383	+				-0.5
1,694,383	+				+0.4
1,694,386	-				+0.5
1,694,391	-				+0.1
1,694,415	+		GFF1665	0.11	-0.9
1,694,426	-		GFF1665	0.12	+1.5
1,694,431	-		GFF1665	0.13	-0.5
1,694,454	+		GFF1665	0.17	+0.5
1,694,476	+		GFF1665	0.20	-1.1
1,694,484	-		GFF1665	0.21	-0.5
1,694,495	+		GFF1665	0.23	+0.2
1,694,495	-		GFF1665	0.23	+0.5
1,694,510	-		GFF1665	0.25	-0.6
1,694,520	+		GFF1665	0.27	-0.1
1,694,533	-		GFF1665	0.29	+0.7
1,694,536	+		GFF1665	0.29	-0.7
1,694,541	+		GFF1665	0.30	-2.2
1,694,545	+		GFF1665	0.30	-0.1
1,694,549	-		GFF1665	0.31	+0.6
1,694,549	-		GFF1665	0.31	-0.2
1,694,564	-		GFF1665	0.33	+0.8
1,694,594	+		GFF1665	0.38	-1.7
1,694,616	+		GFF1665	0.41	-0.4
1,694,623	+		GFF1665	0.42	+0.6
1,694,629	+		GFF1665	0.43	+0.3
1,694,630	+		GFF1665	0.43	-0.1
1,694,630	+		GFF1665	0.43	-0.1
1,694,630	-		GFF1665	0.43	+1.1
1,694,635	+		GFF1665	0.44	+0.8
1,694,678	+		GFF1665	0.51	-1.2
1,694,678	+		GFF1665	0.51	-0.4
1,694,678	+		GFF1665	0.51	+0.6
1,694,683	+		GFF1665	0.51	-0.1
1,694,683	+		GFF1665	0.51	-0.4
1,694,683	+		GFF1665	0.51	-1.3
1,694,683	+		GFF1665	0.51	+0.1
1,694,686	-		GFF1665	0.52	-0.6
1,694,686	-		GFF1665	0.52	-0.5
1,694,686	-		GFF1665	0.52	-0.0
1,694,690	-		GFF1665	0.52	-0.2
1,694,691	-		GFF1665	0.53	-0.6
1,694,691	-		GFF1665	0.53	-0.3
1,694,691	-		GFF1665	0.53	+0.0
1,694,693	+		GFF1665	0.53	-0.9
1,694,696	-		GFF1665	0.53	-2.1
1,694,712	+		GFF1665	0.56	+0.0
1,694,712	+		GFF1665	0.56	-0.7
1,694,712	+		GFF1665	0.56	-0.6
1,694,712	+		GFF1665	0.56	-1.2
1,694,715	-		GFF1665	0.56	-0.7
1,694,720	-		GFF1665	0.57	-1.0
1,694,720	-		GFF1665	0.57	-0.9
1,694,720	-		GFF1665	0.57	+0.9
1,694,720	-		GFF1665	0.57	-1.3
1,694,721	+		GFF1665	0.57	-1.7
1,694,727	-		GFF1665	0.58	-0.0
1,694,736	+		GFF1665	0.59	-0.0
1,694,736	+		GFF1665	0.59	+0.3
1,694,736	+		GFF1665	0.59	-0.4
1,694,744	-		GFF1665	0.61	-1.1
1,694,744	-		GFF1665	0.61	-0.9
1,694,757	-		GFF1665	0.63	-0.6
1,694,791	+		GFF1665	0.68	-2.1
1,694,791	+		GFF1665	0.68	+1.4
1,694,791	+		GFF1665	0.68	-2.2
1,694,791	+		GFF1665	0.68	+1.2
1,694,791	+		GFF1665	0.68	-2.3
1,694,793	+		GFF1665	0.68	+0.4
1,694,799	-		GFF1665	0.69	+0.1
1,694,799	-		GFF1665	0.69	-0.4
1,694,799	-		GFF1665	0.69	+0.4
1,694,799	-		GFF1665	0.69	-0.4
1,694,799	-		GFF1665	0.69	+2.0
1,694,799	-		GFF1665	0.69	-0.2
1,694,801	+		GFF1665	0.69	-0.5
1,694,801	+		GFF1665	0.69	-0.6
1,694,801	+		GFF1665	0.69	+0.3
1,694,801	+		GFF1665	0.69	-0.3
1,694,809	-		GFF1665	0.70	-0.6
1,694,820	-		GFF1665	0.72	-0.5
1,694,823	-		GFF1665	0.73	-1.0
1,694,823	-		GFF1665	0.73	+0.2
1,694,860	+		GFF1665	0.78	+0.3
1,694,866	-		GFF1665	0.79	-2.0
1,694,868	-		GFF1665	0.79	+0.3
1,694,868	-		GFF1665	0.79	-1.2
1,694,875	+		GFF1665	0.80	+1.0
1,694,875	+		GFF1665	0.80	-1.3
1,694,878	-		GFF1665	0.81	+0.2
1,694,880	+		GFF1665	0.81	-0.8
1,694,883	-		GFF1665	0.82	+1.4
1,694,883	-		GFF1665	0.82	-0.5
1,694,904	+		GFF1665	0.85	+0.3
1,694,904	+		GFF1665	0.85	-1.8
1,694,912	-		GFF1665	0.86	-0.3
1,694,912	-		GFF1665	0.86	+0.5
1,694,912	-		GFF1665	0.86	+0.1
1,694,912	-		GFF1665	0.86	-0.5
1,694,918	+		GFF1665	0.87	+0.4
1,694,918	+		GFF1665	0.87	-0.3
1,694,918	+		GFF1665	0.87	-1.1
1,694,918	+		GFF1665	0.87	+0.1
1,694,927	+		GFF1665	0.88	-1.3
1,694,949	+				-0.0
1,694,949	+				-1.3
1,694,954	+				-1.0
1,694,972	-				-2.2
1,694,981	-				-1.3
1,695,032	+				-0.2
1,695,040	-				-0.3
1,695,040	-				-1.3
1,695,040	-				+0.8
1,695,058	+				-1.9
1,695,066	-				+1.5
1,695,066	-				-1.2
1,695,082	-				-0.1
1,695,093	+				+0.6
1,695,093	+				+0.3
1,695,093	+				-1.2
1,695,093	+				-0.7
1,695,093	+				-0.7
1,695,095	+				+0.6
1,695,095	+				+0.1
1,695,095	+				+0.9
1,695,095	+				-1.3
1,695,095	+				-0.8
1,695,095	+				-2.5
1,695,095	+				-1.9
1,695,095	+				-0.5
1,695,095	+				+0.4
1,695,095	+				-0.5
1,695,095	+				-1.4
1,695,095	+				-1.8
1,695,095	+				-2.0
1,695,095	+				-0.7
1,695,095	+				-0.4
1,695,095	+				-1.4
1,695,095	+				-0.2
1,695,095	+				-1.0
1,695,095	+				+0.6
1,695,095	+				+0.4
1,695,095	+				+1.4
1,695,095	+				-0.6
1,695,095	+				+1.3
1,695,101	-				+0.9
1,695,101	-				+0.6
1,695,101	-				+1.3
1,695,101	-				+0.5
1,695,101	-				-0.3
1,695,101	-				+0.4
1,695,101	-				+0.4
1,695,102	-				+0.4
1,695,103	-				+0.1
1,695,103	-				-0.6
1,695,103	-				-2.2
1,695,103	-				-0.5
1,695,103	-				+0.0
1,695,103	-				-0.6
1,695,103	-				-1.7
1,695,103	-				-0.4
1,695,103	-				+0.6
1,695,103	-				+0.3
1,695,103	-				-1.8
1,695,103	-				+0.0
1,695,103	-				-2.0
1,695,103	-				-0.6
1,695,103	-				-0.3
1,695,103	-				-0.2
1,695,103	-				-1.5
1,695,103	-				-1.6
1,695,103	-				+0.5
1,695,103	-				-1.3
1,695,103	-				-1.3
1,695,103	-				-0.8
1,695,103	-				+0.1
1,695,103	-				+0.7
1,695,103	-				-0.2
1,695,103	-				+0.1
1,695,103	-				+0.5
1,695,103	-				-0.7
1,695,103	-				+0.2
1,695,103	-				-0.1
1,695,103	-				+0.5
1,695,103	-				+1.0
1,695,103	-				-0.6
1,695,110	+				-1.6
1,695,115	+				-0.3
1,695,118	-				-0.5
1,695,118	-				-1.3
1,695,119	+				-2.1
1,695,123	-				-1.1
1,695,150	-				-0.5
1,695,160	-				-0.8
1,695,174	-				+0.3
1,695,184	+				-1.7
1,695,192	-				-0.3
1,695,207	+		GFF1666	0.10	-1.8
1,695,216	-		GFF1666	0.11	+1.1
1,695,246	+		GFF1666	0.13	-2.5
1,695,265	-		GFF1666	0.14	-1.6
1,695,312	+		GFF1666	0.18	+1.7
1,695,312	+		GFF1666	0.18	-1.6
1,695,312	+		GFF1666	0.18	-0.6
1,695,312	+		GFF1666	0.18	-0.0
1,695,312	+		GFF1666	0.18	+0.7
1,695,318	+		GFF1666	0.19	-0.0
1,695,318	+		GFF1666	0.19	-0.6
1,695,318	+		GFF1666	0.19	-0.2
1,695,318	+		GFF1666	0.19	-1.8
1,695,318	+		GFF1666	0.19	+0.8
1,695,318	+		GFF1666	0.19	+1.1
1,695,320	-		GFF1666	0.19	-0.8
1,695,320	-		GFF1666	0.19	+0.4
1,695,320	-		GFF1666	0.19	-1.3
1,695,320	-		GFF1666	0.19	+0.9
1,695,320	-		GFF1666	0.19	+0.8
1,695,326	-		GFF1666	0.19	+0.7
1,695,326	-		GFF1666	0.19	-0.2
1,695,333	+		GFF1666	0.20	+1.2
1,695,333	+		GFF1666	0.20	+0.2
1,695,341	+		GFF1666	0.20	-1.0
1,695,349	-		GFF1666	0.21	+0.9
1,695,382	+		GFF1666	0.23	-0.5
1,695,382	+		GFF1666	0.23	-0.6
1,695,382	+		GFF1666	0.23	-0.1
1,695,385	-		GFF1666	0.24	-0.2
1,695,396	-		GFF1666	0.25	-0.4
1,695,405	+		GFF1666	0.25	+0.1
1,695,452	-		GFF1666	0.29	-0.6
1,695,452	-		GFF1666	0.29	+0.8
1,695,500	+		GFF1666	0.32	-1.7
1,695,517	+		GFF1666	0.34	+0.0
1,695,544	+		GFF1666	0.36	-2.1
1,695,544	+		GFF1666	0.36	-2.6
1,695,544	+		GFF1666	0.36	-0.4
1,695,548	+		GFF1666	0.36	+0.5
1,695,550	-		GFF1666	0.36	-0.2
1,695,558	+		GFF1666	0.37	+0.7
1,695,558	+		GFF1666	0.37	-1.1
1,695,558	+		GFF1666	0.37	-1.6
1,695,561	-		GFF1666	0.37	+0.4
1,695,561	-		GFF1666	0.37	-1.1
1,695,561	-		GFF1666	0.37	-0.7
1,695,566	-		GFF1666	0.38	+0.6
1,695,566	-		GFF1666	0.38	+0.5
1,695,582	+		GFF1666	0.39	+0.6
1,695,629	-		GFF1666	0.42	-0.4
1,695,631	+		GFF1666	0.43	-0.1
1,695,631	+		GFF1666	0.43	+1.2
1,695,631	+		GFF1666	0.43	+0.4
1,695,639	-		GFF1666	0.43	-0.2
1,695,639	-		GFF1666	0.43	-0.1
1,695,650	+		GFF1666	0.44	-2.2
1,695,687	-		GFF1666	0.47	-1.6
1,695,726	-		GFF1666	0.50	-1.2
1,695,747	+		GFF1666	0.51	-0.2
1,695,761	+		GFF1666	0.52	+0.1
1,695,766	+		GFF1666	0.53	+0.1
1,695,766	+		GFF1666	0.53	-1.5
1,695,766	+		GFF1666	0.53	+0.2
1,695,772	+		GFF1666	0.53	-0.9
1,695,772	+		GFF1666	0.53	+0.3
1,695,774	-		GFF1666	0.53	-0.1
1,695,790	+		GFF1666	0.55	-1.7
1,695,790	+		GFF1666	0.55	-0.6
1,695,798	-		GFF1666	0.55	-0.2
1,695,805	-		GFF1666	0.56	-1.3
1,695,806	+		GFF1666	0.56	+0.2
1,695,806	+		GFF1666	0.56	-0.8
1,695,814	-		GFF1666	0.57	+0.4
1,695,816	+		GFF1666	0.57	-1.2
1,695,858	+		GFF1666	0.60	-1.9
1,695,874	+		GFF1666	0.61	+0.0
1,695,883	+		GFF1666	0.62	-1.9
1,695,899	-		GFF1666	0.63	-0.3
1,695,927	+		GFF1666	0.65	-0.4
1,695,936	-		GFF1666	0.66	-0.4
1,695,993	+		GFF1666	0.70	-0.6
1,695,998	+		GFF1666	0.71	+0.4
1,695,998	+		GFF1666	0.71	+1.1
1,695,998	+		GFF1666	0.71	-0.4
1,696,006	-		GFF1666	0.71	+0.2
1,696,006	-		GFF1666	0.71	+0.5
1,696,006	-		GFF1666	0.71	-0.1
1,696,010	-		GFF1666	0.72	-1.8
1,696,016	-		GFF1666	0.72	-0.1
1,696,022	+		GFF1666	0.72	+0.4
1,696,026	+		GFF1666	0.73	+0.3
1,696,026	+		GFF1666	0.73	+0.9
1,696,026	+		GFF1666	0.73	+0.5
1,696,026	+		GFF1666	0.73	-0.5
1,696,026	+		GFF1666	0.73	+0.3
1,696,026	+		GFF1666	0.73	-1.9
1,696,033	+		GFF1666	0.73	-0.8
1,696,034	-		GFF1666	0.73	-0.9
1,696,080	-		GFF1666	0.77	-0.4
1,696,080	-		GFF1666	0.77	-0.8
1,696,080	-		GFF1666	0.77	-0.7
1,696,095	+		GFF1666	0.78	-1.9
1,696,103	-		GFF1666	0.79	+0.1
1,696,133	+		GFF1666	0.81	-0.4
1,696,138	+		GFF1666	0.81	+0.2
1,696,171	+		GFF1666	0.84	-0.8
1,696,197	+		GFF1666	0.86	+0.4
1,696,215	-		GFF1666	0.87	+0.3
1,696,219	+		GFF1666	0.88	+0.1
1,696,223	+		GFF1666	0.88	-0.3
1,696,323	+				-2.9
1,696,344	+				-1.4
1,696,345	-				-0.3
1,696,345	-				-0.2
1,696,346	+				-1.2
1,696,364	-				+0.4
1,696,364	-				-0.7
1,696,369	+				-1.3
1,696,401	+				-0.2
1,696,413	+				-0.9
1,696,415	+				+0.6
1,696,423	-				-0.9
1,696,424	+				-0.8
1,696,432	-				+0.6
1,696,498	+		GFF1667	0.15	+0.6
1,696,506	+		GFF1667	0.17	-0.5
1,696,533	+		GFF1667	0.22	-1.2
1,696,533	+		GFF1667	0.22	-0.5
1,696,534	-		GFF1667	0.22	+0.5
1,696,537	+		GFF1667	0.22	-0.9
1,696,541	-		GFF1667	0.23	+1.3
1,696,541	-		GFF1667	0.23	+0.1
1,696,541	-		GFF1667	0.23	-0.6
1,696,541	-		GFF1667	0.23	-1.4
1,696,556	+		GFF1667	0.26	-1.3
1,696,564	-		GFF1667	0.28	-0.2
1,696,569	-		GFF1667	0.28	-0.5
1,696,569	-		GFF1667	0.28	+0.5
1,696,574	-		GFF1667	0.29	-0.2
1,696,598	+		GFF1667	0.34	+0.2
1,696,606	-		GFF1667	0.35	-1.7
1,696,606	-		GFF1667	0.35	-0.6
1,696,665	+		GFF1667	0.46	+0.4
1,696,665	+		GFF1667	0.46	+0.6
1,696,673	-		GFF1667	0.48	+0.5
1,696,673	-		GFF1667	0.48	-0.7
1,696,673	-		GFF1667	0.48	+1.2
1,696,675	+		GFF1667	0.48	-0.2
1,696,675	+		GFF1667	0.48	-1.2
1,696,683	-		GFF1667	0.50	-1.6
1,696,683	-		GFF1667	0.50	+0.8
1,696,683	-		GFF1667	0.50	-1.2
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1,696,910	-				-0.4
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1,696,928	+				+0.4
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1,696,943	-				+0.0
1,696,943	-				+1.0
1,696,981	+		GFF1668	0.11	-1.9
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1,697,032	-		GFF1668	0.25	-2.8
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1,697,274	-		GFF1668	0.87	-3.1
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1,697,287	+				-1.8
1,697,295	-				+1.0
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1,697,316	+				-1.1
1,697,321	-				-2.2
1,697,333	+				-1.7
1,697,369	-				+0.4