Strain Fitness in Sphingobium sp. HT1-2 around GFF1640

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,665,670	-		GFF1638	0.83	-0.3
1,665,672	+		GFF1638	0.83	+0.1
1,665,680	-		GFF1638	0.85	-0.4
1,665,685	-		GFF1638	0.86	+0.8
1,665,714	+				-0.2
1,665,741	+				+0.8
1,665,761	+				+1.5
1,665,761	+				-0.3
1,665,767	-				+0.6
1,665,768	+				-0.3
1,665,769	-				+0.5
1,665,789	+				+0.1
1,665,789	+				+1.0
1,665,795	+				-0.1
1,665,797	-				-1.2
1,665,802	-				+0.0
1,665,843	-				+0.3
1,665,847	+				-1.3
1,665,863	-				+0.0
1,665,904	-				+1.5
1,665,945	+				-0.3
1,665,954	+				-3.0
1,665,987	+				-0.4
1,665,995	-				-0.6
1,665,995	-				+0.3
1,666,019	-				-1.6
1,666,041	+				-2.4
1,666,056	+				-0.9
1,666,065	-				-1.2
1,666,065	-				-1.9
1,666,074	-				+0.7
1,666,074	-				-2.8
1,666,090	-				-2.2
1,666,090	-				+0.7
1,666,090	-				-1.0
1,666,096	-				-0.5
1,666,110	+				-0.1
1,666,110	+				+1.2
1,666,118	-				-1.6
1,666,126	+				-2.0
1,666,126	+				-1.2
1,666,134	-				-1.1
1,666,154	+				+0.4
1,666,155	-				+0.4
1,666,155	-				+1.1
1,666,172	-				+1.5
1,666,180	-				+0.1
1,666,183	+				+0.9
1,666,183	+				+0.9
1,666,183	+				-0.5
1,666,183	+				+0.0
1,666,191	-				-0.6
1,666,191	-				+0.0
1,666,194	+				+0.9
1,666,194	+				-0.1
1,666,194	+				-0.2
1,666,298	-		GFF1639	0.35	+0.2
1,666,321	+		GFF1639	0.40	-0.6
1,666,321	+		GFF1639	0.40	-0.4
1,666,321	+		GFF1639	0.40	-0.0
1,666,321	+		GFF1639	0.40	-0.0
1,666,321	+		GFF1639	0.40	-0.0
1,666,321	+		GFF1639	0.40	-2.8
1,666,321	+		GFF1639	0.40	+0.2
1,666,321	+		GFF1639	0.40	+0.1
1,666,321	+		GFF1639	0.40	-1.0
1,666,329	-		GFF1639	0.42	+0.2
1,666,329	-		GFF1639	0.42	+1.0
1,666,329	-		GFF1639	0.42	-1.2
1,666,329	-		GFF1639	0.42	-0.9
1,666,329	-		GFF1639	0.42	-1.7
1,666,329	-		GFF1639	0.42	+0.2
1,666,379	+		GFF1639	0.55	-0.4
1,666,387	-		GFF1639	0.57	+1.0
1,666,387	-		GFF1639	0.57	-0.5
1,666,387	-		GFF1639	0.57	+1.2
1,666,405	+		GFF1639	0.62	+0.7
1,666,405	+		GFF1639	0.62	-1.6
1,666,405	+		GFF1639	0.62	+0.4
1,666,408	-		GFF1639	0.62	-0.6
1,666,409	+		GFF1639	0.63	+0.2
1,666,411	+		GFF1639	0.63	+0.3
1,666,413	-		GFF1639	0.64	+0.7
1,666,413	-		GFF1639	0.64	-0.6
1,666,420	+		GFF1639	0.65	+0.2
1,666,428	-		GFF1639	0.67	-0.3
1,666,428	-		GFF1639	0.67	+0.7
1,666,428	-		GFF1639	0.67	+0.8
1,666,438	-		GFF1639	0.70	+0.6
1,666,438	-		GFF1639	0.70	+1.7
1,666,456	-		GFF1639	0.74	-0.6
1,666,461	+		GFF1639	0.76	-1.2
1,666,492	+		GFF1639	0.84	-0.1
1,666,492	+		GFF1639	0.84	+2.0
1,666,492	+		GFF1639	0.84	-0.6
1,666,494	+		GFF1639	0.84	+0.0
1,666,495	-		GFF1639	0.84	+1.5
1,666,500	-		GFF1639	0.86	-0.0
1,666,500	-		GFF1639	0.86	-0.1
1,666,500	-		GFF1639	0.86	-2.8
1,666,500	-		GFF1639	0.86	+1.2
1,666,500	-		GFF1639	0.86	-1.0
1,666,509	-		GFF1639	0.88	+0.2
1,666,528	+				+0.2
1,666,528	+				-0.5
1,666,528	+				-0.5
1,666,536	-				-1.2
1,666,561	-				+0.2
1,666,561	-				-0.4
1,666,616	+				+0.7
1,666,616	+				-0.9
1,666,624	-				-0.6
1,666,625	+				+1.5
1,666,714	-				-0.1
1,668,631	+		GFF1640	0.86	-0.6
1,668,648	+		GFF1640	0.87	+1.3
1,668,648	+		GFF1640	0.87	+0.2
1,668,648	+		GFF1640	0.87	+0.7
1,668,656	-		GFF1640	0.87	-3.0
1,668,656	-		GFF1640	0.87	-1.2
1,668,721	+				-0.1
1,668,729	-				+0.4
1,668,741	-				-0.4
1,668,741	-				+0.8
1,668,764	+				+0.3
1,668,771	+				-1.4
1,668,771	+				-1.1
1,668,772	-				+0.2
1,668,774	+				+1.3
1,668,779	-				+0.1
1,668,797	+				+1.1
1,668,804	-				+0.4
1,668,813	+				+0.4
1,668,821	-				+1.0
1,668,916	+				-0.3
1,668,916	+				+0.5
1,668,917	+				-1.0
1,668,925	-				-0.4
1,668,935	+				+0.5
1,668,935	+				-0.1
1,668,935	+				-1.7
1,668,935	+				-0.2
1,668,940	+				+0.1
1,668,940	+				+0.7
1,668,940	+				+0.1
1,668,940	+				-0.0
1,668,940	+				-1.7
1,668,940	+				-2.7
1,668,940	+				-0.8
1,668,940	+				+1.4
1,668,940	+				-2.2
1,668,940	+				-0.4
1,668,940	+				+0.8
1,668,948	-				-0.2
1,668,948	-				+1.1
1,668,948	-				-0.0
1,668,948	-				-0.4
1,668,948	-				-0.9
1,668,948	-				+0.6
1,668,948	-				+0.7
1,668,948	-				-1.4
1,668,948	-				-0.5
1,668,948	-				+0.1
1,668,948	-				+0.1
1,668,948	-				-0.5
1,668,948	-				+1.0
1,668,948	-				-1.0
1,668,948	-				-1.8
1,668,948	-				+0.4
1,668,948	-				-0.3
1,668,948	-				-0.1
1,668,948	-				-0.6
1,668,950	+				-0.2
1,668,950	+				-2.1
1,668,950	+				+0.5
1,668,950	+				+1.4
1,668,950	+				+0.1
1,668,950	+				-0.2
1,668,950	+				-0.9
1,668,950	+				-1.0
1,668,950	+				-1.5
1,668,950	+				+0.3
1,668,953	-				+0.6
1,668,958	-				-1.5
1,668,958	-				+0.2
1,668,958	-				+0.1
1,668,958	-				-1.4
1,668,958	-				-0.4
1,668,958	-				-1.1
1,668,958	-				-0.4
1,668,958	-				-0.5
1,668,958	-				-0.4
1,668,960	+				+0.4
1,668,993	-				-1.6
1,668,993	-				-0.5
1,668,994	-				+0.9
1,668,994	-				-1.0
1,669,003	-				-1.3
1,669,019	-				+0.9
1,669,030	-				-2.6
1,669,088	+				-0.8
1,669,117	+				-1.9
1,669,150	-				+1.0
1,669,151	-				-0.3
1,669,152	+				-0.2
1,669,152	+				-0.3
1,669,154	+				+0.9
1,669,154	+				-2.1
1,669,160	-				-0.7
1,669,160	-				-1.3
1,669,169	+				+0.2
1,669,170	-				-0.5
1,669,177	-				-0.5
1,669,184	+				+0.5
1,669,192	-				-1.7
1,669,217	-				-1.2
1,669,230	+				+1.2
1,669,233	-				-0.0
1,669,238	-				+0.9
1,669,238	-				-1.8
1,669,253	-				+0.3
1,669,253	-				-2.7
1,669,290	+				+0.1
1,669,298	-				+0.4
1,669,309	+				+1.3
1,669,316	+				-0.4
1,669,316	+				-1.3
1,669,316	+				-0.2
1,669,317	-				-1.4
1,669,327	+				+1.2
1,669,344	+				-0.8
1,669,352	-				+1.0
1,669,353	-				-0.6
1,669,359	-				+0.2
1,669,393	-				+0.4
1,669,435	+				+0.7
1,669,435	+				+0.2
1,669,435	+				+0.6
1,669,435	+				+0.4
1,669,435	+				-1.4
1,669,435	+				+1.4
1,669,435	+				+0.8
1,669,435	+				+0.1
1,669,435	+				-1.6
1,669,435	+				-0.6
1,669,435	+				+0.0
1,669,435	+				-1.4
1,669,435	+				-0.4
1,669,435	+				+1.8
1,669,452	+				+0.8
1,669,477	+				+0.1
1,669,477	+				+0.2
1,669,479	+				+0.2
1,669,485	-				+1.5
1,669,516	+				-0.3
1,669,528	+				-2.6
1,669,528	+				-1.1
1,669,528	+				+0.6
1,669,528	+				-0.4
1,669,534	-				-0.5
1,669,536	-				-0.1
1,669,536	-				-1.4
1,669,542	-				+0.4
1,669,582	-		GFF1641	0.20	-0.4
1,669,631	+		GFF1641	0.84	-1.7
1,669,638	+				+0.0
1,669,638	+				-1.2
1,669,638	+				-2.7
1,669,644	+				+0.3
1,669,673	+				+1.8
1,669,674	+				+0.2
1,669,674	+				-1.3
1,669,674	+				+0.6
1,669,682	-				-0.4
1,669,697	-				+0.2
1,669,705	+				-0.4
1,669,804	-		GFF1642	0.30	-0.9
1,669,812	-		GFF1642	0.41	+0.2
1,669,845	+		GFF1642	0.84	-0.2
1,669,858	+				+0.2
1,669,897	-				-0.9
1,669,908	-				-1.8
1,669,908	-				-0.3