Strain Fitness in Sphingobium sp. HT1-2 around GFF1613

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,639,538	-				+0.3
1,639,538	-				+0.6
1,639,579	-				-1.0
1,639,604	+				+0.1
1,639,612	-				+0.0
1,639,620	+				-0.3
1,639,628	-		GFF1612	0.10	-0.0
1,639,628	-		GFF1612	0.10	-0.4
1,639,630	+		GFF1612	0.10	+1.0
1,639,633	-		GFF1612	0.11	+0.1
1,639,635	+		GFF1612	0.11	-1.5
1,639,638	-		GFF1612	0.11	-1.6
1,639,639	-		GFF1612	0.11	-0.4
1,639,648	-		GFF1612	0.12	+1.1
1,639,683	+		GFF1612	0.16	+0.4
1,639,683	+		GFF1612	0.16	-1.4
1,639,683	-		GFF1612	0.16	-1.3
1,639,691	-		GFF1612	0.17	+1.0
1,639,691	-		GFF1612	0.17	+1.1
1,639,691	-		GFF1612	0.17	-1.9
1,639,691	-		GFF1612	0.17	-0.5
1,639,702	+		GFF1612	0.18	+1.8
1,639,753	+		GFF1612	0.24	+0.9
1,639,761	-		GFF1612	0.25	+0.8
1,639,773	+		GFF1612	0.26	-0.2
1,639,833	+		GFF1612	0.33	-1.3
1,639,887	-		GFF1612	0.39	-0.5
1,639,946	-		GFF1612	0.45	-0.8
1,639,966	-		GFF1612	0.48	+0.5
1,639,969	-		GFF1612	0.48	-2.4
1,639,976	+		GFF1612	0.49	+1.0
1,639,976	+		GFF1612	0.49	+0.4
1,639,986	+		GFF1612	0.50	+0.4
1,639,986	+		GFF1612	0.50	-1.9
1,639,998	+		GFF1612	0.51	+0.0
1,639,998	+		GFF1612	0.51	-0.0
1,639,998	+		GFF1612	0.51	+1.9
1,640,006	-		GFF1612	0.52	-0.5
1,640,006	-		GFF1612	0.52	-0.1
1,640,081	+		GFF1612	0.60	+1.0
1,640,089	-		GFF1612	0.61	+0.1
1,640,119	-		GFF1612	0.64	+0.4
1,640,131	-		GFF1612	0.66	+0.8
1,640,167	-		GFF1612	0.70	+0.4
1,640,193	-		GFF1612	0.73	+1.7
1,640,260	+		GFF1612	0.80	-2.0
1,640,260	+		GFF1612	0.80	-0.8
1,640,260	+		GFF1612	0.80	-2.8
1,640,263	-		GFF1612	0.80	-0.0
1,640,265	+		GFF1612	0.81	-0.9
1,640,265	+		GFF1612	0.81	-0.4
1,640,265	+		GFF1612	0.81	+0.5
1,640,265	+		GFF1612	0.81	-2.1
1,640,267	+		GFF1612	0.81	+0.2
1,640,268	-		GFF1612	0.81	-0.2
1,640,268	-		GFF1612	0.81	-0.5
1,640,268	-		GFF1612	0.81	-2.0
1,640,268	-		GFF1612	0.81	+0.0
1,640,268	-		GFF1612	0.81	+0.1
1,640,273	-		GFF1612	0.82	-1.1
1,640,273	-		GFF1612	0.82	+0.6
1,640,273	-		GFF1612	0.82	+0.3
1,640,273	-		GFF1612	0.82	-1.3
1,640,280	-		GFF1612	0.82	-1.0
1,640,287	+		GFF1612	0.83	-0.3
1,640,295	+		GFF1612	0.84	+0.1
1,640,343	-		GFF1612	0.89	-1.2
1,640,354	-				-1.8
1,640,384	+				-0.5
1,640,501	-				-2.1
1,640,521	-				-1.3
1,640,533	+				-0.3
1,640,533	-				-1.2
1,640,535	+				-0.5
1,640,541	-				+1.1
1,640,552	+				-0.5
1,640,559	+				+0.6
1,640,567	-				-1.4
1,640,567	-				-1.3
1,640,567	-				-2.2
1,640,567	-				+0.0
1,640,567	-				-0.3
1,640,567	-				-0.6
1,640,567	-				-0.6
1,640,569	+				+0.6
1,640,579	+				-1.0
1,640,619	+				-1.9
1,640,627	-		GFF1613	0.11	-0.2
1,640,627	-		GFF1613	0.11	+0.3
1,640,628	+		GFF1613	0.11	-1.4
1,640,636	-		GFF1613	0.12	+1.4
1,640,636	-		GFF1613	0.12	-1.0
1,640,637	+		GFF1613	0.12	-0.5
1,640,661	+		GFF1613	0.14	-1.3
1,640,666	+		GFF1613	0.15	+1.1
1,640,698	-		GFF1613	0.19	+0.3
1,640,698	-		GFF1613	0.19	-0.1
1,640,698	-		GFF1613	0.19	-0.0
1,640,698	-		GFF1613	0.19	+0.3
1,640,699	-		GFF1613	0.19	-0.8
1,640,706	+		GFF1613	0.20	-1.0
1,640,724	+		GFF1613	0.22	-0.5
1,640,724	+		GFF1613	0.22	-0.3
1,640,724	+		GFF1613	0.22	-1.0
1,640,724	+		GFF1613	0.22	+1.3
1,640,724	+		GFF1613	0.22	+0.4
1,640,732	-		GFF1613	0.23	-2.5
1,640,732	-		GFF1613	0.23	+0.4
1,640,732	-		GFF1613	0.23	-0.1
1,640,759	+		GFF1613	0.26	-0.9
1,640,759	+		GFF1613	0.26	-2.0
1,640,767	-		GFF1613	0.27	+1.8
1,640,790	+		GFF1613	0.29	-0.8
1,640,807	+		GFF1613	0.31	+1.2
1,640,831	-		GFF1613	0.34	-0.9
1,640,852	-		GFF1613	0.36	+1.3
1,640,867	+		GFF1613	0.38	-0.6
1,640,875	-		GFF1613	0.39	+0.1
1,640,881	-		GFF1613	0.39	+1.3
1,640,900	+		GFF1613	0.42	+0.1
1,640,901	+		GFF1613	0.42	+0.5
1,640,901	+		GFF1613	0.42	-0.4
1,640,901	+		GFF1613	0.42	-0.8
1,640,901	+		GFF1613	0.42	+0.4
1,640,901	+		GFF1613	0.42	-0.7
1,640,901	+		GFF1613	0.42	+0.5
1,640,901	+		GFF1613	0.42	+1.3
1,640,901	+		GFF1613	0.42	-0.2
1,640,901	+		GFF1613	0.42	+0.5
1,640,908	-		GFF1613	0.43	-0.2
1,640,909	-		GFF1613	0.43	+0.2
1,640,909	-		GFF1613	0.43	-0.0
1,640,909	-		GFF1613	0.43	+0.3
1,640,909	-		GFF1613	0.43	+0.2
1,640,909	-		GFF1613	0.43	-0.8
1,640,909	-		GFF1613	0.43	-0.9
1,640,909	-		GFF1613	0.43	+0.7
1,640,911	+		GFF1613	0.43	+0.9
1,640,935	+		GFF1613	0.46	+0.2
1,640,938	-		GFF1613	0.46	-1.3
1,640,945	+		GFF1613	0.47	+0.5
1,640,966	+		GFF1613	0.49	+0.2
1,640,971	+		GFF1613	0.50	+0.4
1,640,979	+		GFF1613	0.51	-0.3
1,640,979	+		GFF1613	0.51	-0.4
1,640,979	+		GFF1613	0.51	-2.6
1,640,979	+		GFF1613	0.51	+0.6
1,640,979	+		GFF1613	0.51	+1.1
1,640,979	+		GFF1613	0.51	-0.0
1,640,979	+		GFF1613	0.51	+1.5
1,640,979	+		GFF1613	0.51	+0.3
1,640,979	+		GFF1613	0.51	-1.6
1,640,979	+		GFF1613	0.51	-1.5
1,640,982	+		GFF1613	0.51	-1.5
1,640,987	-		GFF1613	0.52	+0.3
1,640,987	-		GFF1613	0.52	-2.0
1,640,987	-		GFF1613	0.52	+1.2
1,640,987	-		GFF1613	0.52	-0.5
1,640,990	-		GFF1613	0.52	-0.1
1,640,997	+		GFF1613	0.53	-2.0
1,641,028	-		GFF1613	0.56	+0.1
1,641,033	-		GFF1613	0.57	-0.1
1,641,038	-		GFF1613	0.57	+0.4
1,641,038	-		GFF1613	0.57	-1.0
1,641,045	+		GFF1613	0.58	-0.5
1,641,045	+		GFF1613	0.58	-0.2
1,641,048	-		GFF1613	0.58	+0.1
1,641,053	-		GFF1613	0.59	+0.3
1,641,055	+		GFF1613	0.59	-0.2
1,641,055	-		GFF1613	0.59	+0.2
1,641,064	-		GFF1613	0.60	-2.3
1,641,084	+		GFF1613	0.63	-0.4
1,641,084	+		GFF1613	0.63	-0.2
1,641,089	+		GFF1613	0.63	-2.4
1,641,092	+		GFF1613	0.63	+0.6
1,641,092	-		GFF1613	0.63	+1.2
1,641,093	+		GFF1613	0.64	-0.6
1,641,094	+		GFF1613	0.64	+0.8
1,641,094	+		GFF1613	0.64	-0.9
1,641,100	-		GFF1613	0.64	+0.6
1,641,101	-		GFF1613	0.65	-0.5
1,641,135	-		GFF1613	0.68	-1.7
1,641,143	+		GFF1613	0.69	+0.5
1,641,175	+		GFF1613	0.73	-1.5
1,641,201	-		GFF1613	0.76	-1.9
1,641,207	+		GFF1613	0.77	-0.7
1,641,234	+		GFF1613	0.80	+0.1
1,641,237	-		GFF1613	0.80	-0.9
1,641,258	-		GFF1613	0.82	-0.7
1,641,268	+		GFF1613	0.84	-0.7
1,641,307	+		GFF1613	0.88	-0.7
1,641,344	+				-2.2
1,641,348	+				-0.2
1,641,356	-				-0.9
1,641,356	-				-0.7
1,641,367	+				-0.4
1,641,367	+				+0.8
1,641,367	+				-0.7
1,641,367	+				+0.5
1,641,367	+				+0.7
1,641,375	-				-0.9
1,641,375	-				-1.1
1,641,430	+				+0.2
1,641,454	+				-0.9
1,641,458	-				+0.9
1,641,462	+				+0.2
1,641,462	+				-0.2
1,641,470	-				+0.9
1,641,504	-				-0.5
1,641,533	+		GFF1614	0.20	+0.3
1,641,547	+		GFF1614	0.28	-2.4
1,641,555	-		GFF1614	0.33	-2.0
1,641,561	-		GFF1614	0.36	+0.5
1,641,567	-		GFF1614	0.40	+0.1
1,641,577	+		GFF1614	0.45	+0.2
1,641,598	+		GFF1614	0.57	-1.4
1,641,606	-		GFF1614	0.62	-1.7
1,641,615	-		GFF1614	0.67	+0.7
1,641,615	-		GFF1614	0.67	-1.5
1,641,620	-		GFF1614	0.70	+0.5
1,641,678	+				-1.2
1,641,714	-				-1.8
1,641,806	-				-1.2
1,641,857	-				-1.4
1,641,862	-				+1.5
1,641,867	-				-1.2
1,641,867	-				-0.8
1,641,900	+				-0.8
1,641,936	+				+1.1
1,642,019	-				+0.0
1,642,019	-				+1.3
1,642,025	-				+0.9
1,642,025	-				-1.7
1,642,025	-				+1.6
1,642,092	+				+0.0
1,642,100	-				+0.3
1,642,100	-				-0.1
1,642,132	+				+0.4
1,642,132	+				+1.1
1,642,137	+				-0.0
1,642,140	-				-0.9
1,642,140	-				+0.6
1,642,140	-				+0.5
1,642,170	+		GFF1616	0.12	-0.5
1,642,170	+		GFF1616	0.12	-0.3
1,642,179	+		GFF1616	0.13	-2.4
1,642,186	+		GFF1616	0.14	+0.8
1,642,186	+		GFF1616	0.14	-1.5
1,642,186	+		GFF1616	0.14	-0.9
1,642,186	+		GFF1616	0.14	+0.6
1,642,188	+		GFF1616	0.14	-0.5
1,642,188	+		GFF1616	0.14	-0.7
1,642,192	+		GFF1616	0.14	+0.7
1,642,194	-		GFF1616	0.15	-0.4
1,642,194	-		GFF1616	0.15	-0.2
1,642,194	-		GFF1616	0.15	-0.2
1,642,194	-		GFF1616	0.15	+1.3
1,642,194	-		GFF1616	0.15	+0.1
1,642,196	-		GFF1616	0.15	+0.5
1,642,196	-		GFF1616	0.15	-1.1
1,642,206	+		GFF1616	0.16	+0.4
1,642,206	+		GFF1616	0.16	+0.0
1,642,206	+		GFF1616	0.16	-0.2
1,642,206	+		GFF1616	0.16	+0.6
1,642,214	-		GFF1616	0.17	-2.1
1,642,214	-		GFF1616	0.17	-0.3
1,642,214	-		GFF1616	0.17	+0.8
1,642,214	-		GFF1616	0.17	-1.3
1,642,214	-		GFF1616	0.17	-2.0
1,642,214	-		GFF1616	0.17	+0.4
1,642,214	-		GFF1616	0.17	-0.0
1,642,214	-		GFF1616	0.17	-0.3
1,642,243	+		GFF1616	0.19	-1.3
1,642,251	-		GFF1616	0.20	-0.2
1,642,301	-		GFF1616	0.25	-0.7
1,642,310	-		GFF1616	0.26	-0.7
1,642,357	-		GFF1616	0.30	+0.2
1,642,377	-		GFF1616	0.32	-0.2
1,642,403	+		GFF1616	0.35	+1.7