Strain Fitness in Sphingobium sp. HT1-2 around GFF159

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
155,234	+		GFF158	0.62	-2.5
155,234	+		GFF158	0.62	+0.2
155,242	-		GFF158	0.62	-3.0
155,242	-		GFF158	0.62	-0.9
155,247	-		GFF158	0.63	-0.3
155,252	+		GFF158	0.63	-1.9
155,260	-		GFF158	0.63	-0.7
155,260	-		GFF158	0.63	-1.7
155,262	+		GFF158	0.63	+0.1
155,262	+		GFF158	0.63	+0.6
155,266	+		GFF158	0.64	-0.3
155,274	-		GFF158	0.64	+0.0
155,311	+		GFF158	0.66	-1.4
155,323	+		GFF158	0.66	+0.4
155,323	+		GFF158	0.66	-0.0
155,328	+		GFF158	0.67	-1.6
155,328	+		GFF158	0.67	-1.7
155,331	-		GFF158	0.67	+0.7
155,331	-		GFF158	0.67	-0.5
155,331	-		GFF158	0.67	-1.2
155,331	-		GFF158	0.67	-2.3
155,331	-		GFF158	0.67	+0.1
155,336	-		GFF158	0.67	+0.3
155,338	-		GFF158	0.67	-0.1
155,351	-		GFF158	0.68	-0.3
155,355	+		GFF158	0.68	-0.5
155,355	+		GFF158	0.68	+1.2
155,355	+		GFF158	0.68	-2.1
155,355	+		GFF158	0.68	-1.3
155,355	+		GFF158	0.68	+0.4
155,355	+		GFF158	0.68	-1.2
155,355	+		GFF158	0.68	+1.3
155,355	+		GFF158	0.68	-0.7
155,355	+		GFF158	0.68	-2.6
155,355	+		GFF158	0.68	+0.1
155,355	+		GFF158	0.68	-0.6
155,355	+		GFF158	0.68	-2.2
155,355	+		GFF158	0.68	+0.9
155,355	+		GFF158	0.68	+0.6
155,362	+		GFF158	0.68	-0.1
155,363	-		GFF158	0.68	+1.1
155,363	-		GFF158	0.68	+0.7
155,363	-		GFF158	0.68	-0.2
155,363	-		GFF158	0.68	-1.0
155,363	-		GFF158	0.68	+0.1
155,363	-		GFF158	0.68	-1.3
155,363	-		GFF158	0.68	+0.6
155,363	-		GFF158	0.68	+1.9
155,363	-		GFF158	0.68	+1.1
155,375	-		GFF158	0.69	+0.5
155,393	+		GFF158	0.70	-3.1
155,410	+		GFF158	0.70	-2.0
155,417	+		GFF158	0.71	+0.2
155,429	-		GFF158	0.71	-0.4
155,452	+		GFF158	0.72	-1.2
155,460	-		GFF158	0.73	+0.4
155,473	-		GFF158	0.73	-1.8
155,486	+		GFF158	0.74	-0.2
155,494	-		GFF158	0.74	-0.3
155,509	+		GFF158	0.75	+0.2
155,509	+		GFF158	0.75	-0.1
155,558	+		GFF158	0.77	-1.7
155,558	+		GFF158	0.77	-0.2
155,585	+		GFF158	0.79	-0.9
155,593	-		GFF158	0.79	+0.9
155,596	-		GFF158	0.79	-1.7
155,611	+		GFF158	0.80	-0.4
155,626	-		GFF158	0.81	+0.4
155,626	-		GFF158	0.81	+0.8
155,627	-		GFF158	0.81	-0.4
155,655	+		GFF158	0.82	-1.0
155,655	+		GFF158	0.82	-2.0
155,663	-		GFF158	0.82	-1.1
155,663	-		GFF158	0.82	+0.3
155,666	+		GFF158	0.83	+0.7
155,672	+		GFF158	0.83	+0.9
155,672	+		GFF158	0.83	-0.7
155,672	+		GFF158	0.83	+0.4
155,680	-		GFF158	0.83	+0.4
155,680	-		GFF158	0.83	-2.8
155,704	+		GFF158	0.84	-2.3
155,704	+		GFF158	0.84	+1.5
155,711	+		GFF158	0.85	+0.5
155,719	-		GFF158	0.85	-2.7
155,719	-		GFF158	0.85	-0.0
155,720	+		GFF158	0.85	+0.5
155,737	+		GFF158	0.86	+0.0
155,745	-		GFF158	0.86	-0.1
155,745	-		GFF158	0.86	+0.2
155,745	-		GFF158	0.86	-2.9
155,745	-		GFF158	0.86	+0.0
155,745	-		GFF158	0.86	-0.5
155,763	+		GFF158	0.87	+1.6
155,763	+		GFF158	0.87	+1.1
155,763	+		GFF158	0.87	-0.8
155,763	+		GFF158	0.87	-0.8
155,763	+		GFF158	0.87	-0.4
155,771	-		GFF158	0.88	+1.4
155,771	-		GFF158	0.88	-1.6
155,797	-		GFF158	0.89	+1.6
155,803	-		GFF158	0.89	+0.5
155,828	+				-0.2
155,833	+				-0.8
155,833	+				+1.4
155,833	+				+0.1
155,833	+				+1.0
155,833	+				+0.5
155,840	-				-1.6
155,841	-				+0.2
155,841	-				-0.0
155,841	-				-1.6
155,847	-				+1.3
155,853	-				-2.2
155,861	+				+0.4
155,861	+				-0.3
155,864	-				-0.4
155,866	+				-1.6
155,872	-				-0.2
155,874	-				+0.3
155,895	-				+0.4
155,921	-				-0.0
155,930	-				+0.1
155,938	+				-0.9
155,939	-				-0.3
155,963	-				+0.9
155,997	-				-0.4
156,022	+				-1.3
156,035	+				+0.1
156,037	+				+1.2
156,043	-				-2.0
156,043	-				-1.7
156,064	+				-1.1
156,064	+				-0.3
156,064	+				-0.1
156,064	+				-0.1
156,069	+				-0.3
156,072	-				-1.1
156,072	-				-1.6
156,072	-				-0.3
156,072	-				-1.4
156,076	+				-0.8
156,076	+				-0.8
156,077	-				+0.4
156,077	-				-3.1
156,086	+				-0.1
156,086	-				-0.3
156,086	-				+0.6
156,094	-				-0.0
156,094	-				+0.8
156,111	-				-0.9
156,173	+				-0.3
156,174	+				+1.5
156,180	+				-1.4
156,180	+				-1.0
156,188	+				-0.9
156,188	+				+1.1
156,188	+				+0.6
156,188	-				-0.7
156,188	-				+0.1
156,188	-				-0.1
156,201	-				-0.8
156,212	+				-0.9
156,214	+				-2.7
156,235	+				+0.7
156,241	-				-0.2
156,247	+				-0.7
156,255	-				+0.6
156,269	-				+0.9
156,327	+		GFF159	0.11	+0.1
156,335	-		GFF159	0.12	-1.4
156,362	+		GFF159	0.14	-1.0
156,389	+		GFF159	0.16	+0.4
156,397	-		GFF159	0.16	+0.1
156,397	-		GFF159	0.16	+0.4
156,397	-		GFF159	0.16	-0.6
156,409	-		GFF159	0.17	-0.6
156,450	+		GFF159	0.20	-2.4
156,450	+		GFF159	0.20	+0.8
156,451	+		GFF159	0.20	-1.4
156,458	-		GFF159	0.21	-0.9
156,462	-		GFF159	0.21	-1.0
156,468	+		GFF159	0.22	-2.1
156,468	+		GFF159	0.22	-0.8
156,468	+		GFF159	0.22	-0.1
156,468	+		GFF159	0.22	+1.4
156,468	+		GFF159	0.22	+1.1
156,468	+		GFF159	0.22	+0.8
156,468	+		GFF159	0.22	+1.6
156,468	+		GFF159	0.22	-0.3
156,476	+		GFF159	0.22	-0.7
156,476	-		GFF159	0.22	-0.5
156,476	-		GFF159	0.22	-1.6
156,476	-		GFF159	0.22	+0.2
156,476	-		GFF159	0.22	-1.5
156,476	-		GFF159	0.22	-0.8
156,476	-		GFF159	0.22	+0.3
156,476	-		GFF159	0.22	+0.4
156,476	-		GFF159	0.22	+0.7
156,476	-		GFF159	0.22	+2.0
156,476	-		GFF159	0.22	-0.0
156,476	-		GFF159	0.22	-1.0
156,476	-		GFF159	0.22	+1.1
156,476	-		GFF159	0.22	-0.4
156,476	-		GFF159	0.22	-0.8
156,476	-		GFF159	0.22	+0.4
156,476	-		GFF159	0.22	-2.8
156,489	-		GFF159	0.23	-0.1
156,494	+		GFF159	0.24	+0.3
156,541	-		GFF159	0.27	-1.0
156,559	-		GFF159	0.29	+0.3
156,559	-		GFF159	0.29	-2.5
156,581	-		GFF159	0.30	-0.2
156,583	-		GFF159	0.30	-0.6
156,593	-		GFF159	0.31	+0.5
156,607	+		GFF159	0.32	-1.7
156,607	+		GFF159	0.32	+0.2
156,612	+		GFF159	0.33	-1.3
156,612	-		GFF159	0.33	+0.6
156,615	-		GFF159	0.33	+0.8
156,620	-		GFF159	0.33	+0.6
156,620	-		GFF159	0.33	-0.2
156,620	-		GFF159	0.33	+0.9
156,620	-		GFF159	0.33	-1.4
156,637	+		GFF159	0.34	-0.4
156,637	+		GFF159	0.34	-1.3
156,637	+		GFF159	0.34	-0.5
156,642	+		GFF159	0.35	+1.9
156,650	+		GFF159	0.35	-0.6
156,650	+		GFF159	0.35	-0.8
156,663	-		GFF159	0.36	+1.6
156,669	+		GFF159	0.37	-0.7
156,672	+		GFF159	0.37	-0.1
156,672	-		GFF159	0.37	-0.6
156,674	+		GFF159	0.37	-0.2
156,681	+		GFF159	0.38	+0.2
156,682	-		GFF159	0.38	-1.0
156,691	-		GFF159	0.39	-0.2
156,714	-		GFF159	0.40	+0.1
156,714	-		GFF159	0.40	+0.9
156,747	+		GFF159	0.43	-0.1
156,757	+		GFF159	0.44	-0.2
156,758	+		GFF159	0.44	-0.6
156,765	-		GFF159	0.44	-0.5
156,765	-		GFF159	0.44	-1.3
156,765	-		GFF159	0.44	-0.9
156,767	+		GFF159	0.44	+0.8
156,775	-		GFF159	0.45	+0.8
156,790	-		GFF159	0.46	+1.5
156,792	+		GFF159	0.46	-1.4
156,792	+		GFF159	0.46	+0.4
156,792	+		GFF159	0.46	-0.2
156,792	+		GFF159	0.46	-0.6
156,792	+		GFF159	0.46	-0.0
156,792	+		GFF159	0.46	-0.5
156,792	+		GFF159	0.46	+0.1
156,798	-		GFF159	0.47	-0.3
156,800	-		GFF159	0.47	+0.4
156,800	-		GFF159	0.47	-0.0
156,800	-		GFF159	0.47	+0.8
156,800	-		GFF159	0.47	-0.5
156,800	-		GFF159	0.47	+0.5
156,800	-		GFF159	0.47	+0.6
156,800	-		GFF159	0.47	-0.4
156,800	-		GFF159	0.47	-0.0
156,800	-		GFF159	0.47	-1.5
156,800	-		GFF159	0.47	-1.8
156,800	-		GFF159	0.47	+0.0
156,800	-		GFF159	0.47	+0.5
156,800	-		GFF159	0.47	+0.8
156,800	-		GFF159	0.47	+0.4
156,842	+		GFF159	0.50	-1.6
156,842	+		GFF159	0.50	-0.9
156,842	+		GFF159	0.50	+0.8
156,850	-		GFF159	0.51	-0.3
156,850	-		GFF159	0.51	-0.5
156,850	-		GFF159	0.51	-0.9
156,850	-		GFF159	0.51	+0.2
156,861	+		GFF159	0.51	-1.9
156,869	-		GFF159	0.52	+1.4
156,938	-		GFF159	0.57	+0.4
156,951	+		GFF159	0.58	-1.5
156,964	-		GFF159	0.59	+0.0
156,964	-		GFF159	0.59	+0.4
156,987	-		GFF159	0.61	+1.1
157,023	-		GFF159	0.64	-1.7
157,064	+		GFF159	0.67	-0.1
157,064	+		GFF159	0.67	+0.3
157,079	-		GFF159	0.68	-2.5
157,079	-		GFF159	0.68	-1.2
157,081	+		GFF159	0.68	-1.0
157,081	+		GFF159	0.68	+1.0
157,083	+		GFF159	0.68	+1.0
157,089	-		GFF159	0.69	-1.8
157,089	-		GFF159	0.69	-0.8
157,089	-		GFF159	0.69	-0.2
157,089	-		GFF159	0.69	+1.2
157,128	+		GFF159	0.72	+0.3
157,128	+		GFF159	0.72	+0.6
157,128	+		GFF159	0.72	-1.9
157,128	+		GFF159	0.72	+0.2
157,136	-		GFF159	0.72	-0.3
157,136	-		GFF159	0.72	-0.7
157,150	+		GFF159	0.73	-0.6
157,155	-		GFF159	0.74	-0.1
157,155	-		GFF159	0.74	-1.9
157,155	-		GFF159	0.74	+0.4
157,158	-		GFF159	0.74	+0.3
157,168	+		GFF159	0.75	-0.3
157,212	-		GFF159	0.78	-0.0
157,232	+		GFF159	0.80	+0.4
157,242	-		GFF159	0.80	-0.3
157,243	+		GFF159	0.80	-0.3
157,251	-		GFF159	0.81	+0.4
157,251	-		GFF159	0.81	-1.5
157,251	-		GFF159	0.81	-2.0
157,265	+		GFF159	0.82	+0.2
157,278	+		GFF159	0.83	+0.4
157,278	+		GFF159	0.83	-1.5
157,288	+		GFF159	0.84	-1.2
157,288	+		GFF159	0.84	-1.4
157,288	+		GFF159	0.84	+1.1
157,288	+		GFF159	0.84	+0.6
157,288	+		GFF159	0.84	-0.0
157,288	+		GFF159	0.84	-0.3
157,288	+		GFF159	0.84	+0.4
157,288	+		GFF159	0.84	+0.0
157,288	+		GFF159	0.84	-0.0
157,288	+		GFF159	0.84	-0.7
157,288	+		GFF159	0.84	-0.2
157,293	+		GFF159	0.84	-0.4
157,293	+		GFF159	0.84	+0.7
157,296	-		GFF159	0.85	-1.0
157,296	-		GFF159	0.85	-0.5
157,296	-		GFF159	0.85	-0.2
157,296	-		GFF159	0.85	+0.4
157,296	-		GFF159	0.85	-1.0
157,296	-		GFF159	0.85	-1.0
157,296	-		GFF159	0.85	+0.0
157,296	-		GFF159	0.85	+0.0
157,296	-		GFF159	0.85	-0.1
157,296	-		GFF159	0.85	+0.5
157,296	-		GFF159	0.85	-0.0
157,296	-		GFF159	0.85	-0.4
157,296	-		GFF159	0.85	-1.3
157,306	-		GFF159	0.85	+0.5
157,307	-		GFF159	0.85	-1.0
157,333	-		GFF159	0.87	+0.6
157,338	-		GFF159	0.88	+1.3
157,345	-		GFF159	0.88	+0.7
157,360	-		GFF159	0.89	-0.7
157,384	-				-0.7
157,395	+				+0.7
157,395	+				+0.1
157,396	+				+0.3
157,396	+				-0.6
157,397	-				-1.0
157,403	+				+1.5
157,403	+				-0.3
157,403	-				+0.0
157,403	-				-0.6
157,403	-				-0.3
157,418	+				-1.3
157,448	+				+0.4
157,448	+				+0.2
157,448	+				-0.3
157,448	+				-0.3
157,448	+				-2.5
157,448	+				-0.6
157,448	+				-2.3
157,456	-				+0.4
157,459	+				-0.6
157,459	+				-0.5
157,467	-				-0.2
157,480	+				-0.4
157,503	-				-1.1
157,594	-				+0.1
157,604	+				-0.3
157,609	+				+0.2
157,634	-				-0.2
157,635	+				-0.0
157,636	-				-0.0
157,649	+				+0.3
157,649	+				+0.1
157,657	-				+0.2
157,657	-				+0.5
157,678	-		GFF160	0.10	-0.8
157,694	+		GFF160	0.11	-1.0
157,694	+		GFF160	0.11	-1.2
157,696	+		GFF160	0.11	+0.5
157,696	+		GFF160	0.11	+2.1
157,702	-		GFF160	0.12	+2.2
157,702	-		GFF160	0.12	-1.2
157,702	-		GFF160	0.12	-0.4
157,702	-		GFF160	0.12	-1.3
157,702	-		GFF160	0.12	-0.0
157,702	-		GFF160	0.12	+0.6
157,715	+		GFF160	0.12	+0.0
157,754	+		GFF160	0.15	-0.1
157,754	+		GFF160	0.15	-0.5
157,754	+		GFF160	0.15	-1.2
157,760	-		GFF160	0.15	-0.3
157,762	-		GFF160	0.15	-1.2
157,762	-		GFF160	0.15	-0.2
157,762	-		GFF160	0.15	-2.5
157,762	-		GFF160	0.15	-1.3
157,782	+		GFF160	0.16	+0.2
157,782	+		GFF160	0.16	-0.9
157,787	+		GFF160	0.17	+0.3
157,787	+		GFF160	0.17	+0.4
157,790	-		GFF160	0.17	-1.9
157,795	-		GFF160	0.17	+1.0
157,796	-		GFF160	0.17	-0.5
157,801	-		GFF160	0.17	-0.1
157,806	-		GFF160	0.18	-1.1
157,818	+		GFF160	0.18	-0.3
157,820	-		GFF160	0.18	-0.6
157,851	-		GFF160	0.20	+1.5
157,852	+		GFF160	0.20	-0.5
157,853	+		GFF160	0.20	-1.0
157,863	+		GFF160	0.21	-2.7
157,871	-		GFF160	0.21	-1.5
157,886	+		GFF160	0.22	+0.9
157,886	+		GFF160	0.22	-1.6
157,888	+		GFF160	0.22	-0.5
157,894	-		GFF160	0.23	+0.5
157,898	+		GFF160	0.23	+0.2
157,898	+		GFF160	0.23	-1.1
157,898	+		GFF160	0.23	+0.6
157,898	+		GFF160	0.23	-1.9
157,966	+		GFF160	0.27	+0.5
157,971	+		GFF160	0.27	-1.0
157,971	+		GFF160	0.27	-0.2
157,971	+		GFF160	0.27	+0.6
157,971	+		GFF160	0.27	-0.3
157,974	-		GFF160	0.27	+0.6
157,974	-		GFF160	0.27	+0.2
157,979	-		GFF160	0.27	+0.7
157,979	-		GFF160	0.27	-0.1
157,979	-		GFF160	0.27	-0.2
157,979	-		GFF160	0.27	-1.3
157,979	-		GFF160	0.27	-0.9
157,979	-		GFF160	0.27	+0.7
157,979	-		GFF160	0.27	+1.6
157,979	-		GFF160	0.27	-1.2
158,011	+		GFF160	0.29	-3.1
158,021	-		GFF160	0.30	+0.7
158,052	+		GFF160	0.32	-1.0
158,078	+		GFF160	0.33	-0.3
158,086	-		GFF160	0.34	-1.3
158,091	+		GFF160	0.34	+0.0
158,109	-		GFF160	0.35	+0.2
158,129	+		GFF160	0.36	+0.0
158,138	-		GFF160	0.37	-1.9
158,162	+		GFF160	0.38	-0.9
158,162	+		GFF160	0.38	-0.3
158,162	+		GFF160	0.38	+0.2
158,162	+		GFF160	0.38	-0.5
158,162	+		GFF160	0.38	-0.0
158,162	+		GFF160	0.38	-1.3
158,162	+		GFF160	0.38	-1.0
158,162	+		GFF160	0.38	-1.1
158,162	+		GFF160	0.38	-0.2
158,165	-		GFF160	0.38	+0.3
158,170	-		GFF160	0.38	+0.4
158,170	-		GFF160	0.38	-0.9
158,170	-		GFF160	0.38	-1.1
158,170	-		GFF160	0.38	-0.4
158,170	-		GFF160	0.38	+0.8
158,175	-		GFF160	0.39	-1.5
158,175	-		GFF160	0.39	+0.5
158,179	+		GFF160	0.39	+0.4
158,179	+		GFF160	0.39	+0.5
158,179	+		GFF160	0.39	-0.4
158,179	+		GFF160	0.39	-0.4
158,187	-		GFF160	0.39	+1.1
158,212	+		GFF160	0.41	-0.8
158,220	-		GFF160	0.41	+0.3
158,235	+		GFF160	0.42	-0.4
158,238	-		GFF160	0.42	-1.2
158,257	+		GFF160	0.43	-0.2
158,257	+		GFF160	0.43	+0.8
158,265	-		GFF160	0.44	+0.8
158,270	+		GFF160	0.44	+0.2
158,291	+		GFF160	0.45	-0.2
158,328	+		GFF160	0.47	-1.7
158,351	-		GFF160	0.49	-2.0
158,365	+		GFF160	0.49	-1.4
158,374	+		GFF160	0.50	-1.1
158,374	+		GFF160	0.50	-0.4
158,375	-		GFF160	0.50	-2.0
158,382	-		GFF160	0.50	-0.1
158,393	+		GFF160	0.51	-0.8
158,393	+		GFF160	0.51	+1.2
158,395	+		GFF160	0.51	-1.4
158,401	-		GFF160	0.51	-0.5
158,401	-		GFF160	0.51	-0.2
158,403	+		GFF160	0.52	-1.3
158,403	-		GFF160	0.52	+1.6
158,413	+		GFF160	0.52	-1.8
158,413	-		GFF160	0.52	-0.2
158,421	+		GFF160	0.53	+0.4
158,423	+		GFF160	0.53	-1.9
158,451	-		GFF160	0.54	-0.3
158,493	+		GFF160	0.57	-1.3