Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF145 and GFF146 are separated by 66 nucleotides GFF146 and GFF147 are separated by 112 nucleotides
GFF145 - Prolyl-tRNA synthetase (EC 6.1.1.15), archaeal/eukaryal type, at 139,145 to 140,725
GFF145
GFF146 - Protease II (EC 3.4.21.83), at 140,792 to 142,918
GFF146
GFF147 - ATP-dependent hsl protease ATP-binding subunit HslU, at 143,031 to 144,332
GFF147
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.802 kb on + strand at 140.810 kb on - strand at 140.850 kb on - strand at 140.876 kb on + strand at 140.962 kb on + strand at 140.962 kb on + strand at 140.962 kb on + strand at 140.970 kb on - strand at 140.970 kb on - strand at 140.984 kb on + strand at 141.010 kb on + strand, within GFF146 at 141.010 kb on + strand, within GFF146 at 141.010 kb on + strand, within GFF146 at 141.010 kb on + strand, within GFF146 at 141.014 kb on + strand, within GFF146 at 141.014 kb on + strand, within GFF146 at 141.015 kb on + strand, within GFF146 at 141.015 kb on + strand, within GFF146 at 141.018 kb on - strand, within GFF146 at 141.022 kb on - strand, within GFF146 at 141.023 kb on - strand, within GFF146 at 141.023 kb on - strand, within GFF146 at 141.023 kb on - strand, within GFF146 at 141.023 kb on - strand, within GFF146 at 141.036 kb on + strand, within GFF146 at 141.056 kb on - strand, within GFF146 at 141.064 kb on + strand, within GFF146 at 141.069 kb on + strand, within GFF146 at 141.069 kb on + strand, within GFF146 at 141.069 kb on + strand, within GFF146 at 141.077 kb on + strand, within GFF146 at 141.077 kb on - strand, within GFF146 at 141.082 kb on + strand, within GFF146 at 141.082 kb on + strand, within GFF146 at 141.082 kb on + strand, within GFF146 at 141.090 kb on - strand, within GFF146 at 141.090 kb on - strand, within GFF146 at 141.090 kb on - strand, within GFF146 at 141.095 kb on - strand, within GFF146 at 141.095 kb on - strand, within GFF146 at 141.100 kb on - strand, within GFF146 at 141.136 kb on - strand, within GFF146 at 141.143 kb on + strand, within GFF146 at 141.157 kb on - strand, within GFF146 at 141.162 kb on + strand, within GFF146 at 141.186 kb on + strand, within GFF146 at 141.187 kb on + strand, within GFF146 at 141.206 kb on + strand, within GFF146 at 141.214 kb on - strand, within GFF146 at 141.214 kb on - strand, within GFF146 at 141.216 kb on + strand, within GFF146 at 141.221 kb on + strand, within GFF146 at 141.229 kb on - strand, within GFF146 at 141.229 kb on - strand, within GFF146 at 141.273 kb on + strand, within GFF146 at 141.278 kb on + strand, within GFF146 at 141.281 kb on - strand, within GFF146 at 141.281 kb on - strand, within GFF146 at 141.281 kb on - strand, within GFF146 at 141.307 kb on - strand, within GFF146 at 141.401 kb on + strand, within GFF146 at 141.409 kb on - strand, within GFF146 at 141.431 kb on + strand, within GFF146 at 141.439 kb on + strand, within GFF146 at 141.486 kb on + strand, within GFF146 at 141.494 kb on - strand, within GFF146 at 141.494 kb on - strand, within GFF146 at 141.528 kb on + strand, within GFF146 at 141.528 kb on + strand, within GFF146 at 141.550 kb on + strand, within GFF146 at 141.573 kb on + strand, within GFF146 at 141.573 kb on + strand, within GFF146 at 141.573 kb on + strand, within GFF146 at 141.581 kb on - strand, within GFF146 at 141.581 kb on - strand, within GFF146 at 141.581 kb on - strand, within GFF146 at 141.581 kb on - strand, within GFF146 at 141.605 kb on + strand, within GFF146 at 141.611 kb on + strand, within GFF146 at 141.620 kb on + strand, within GFF146 at 141.628 kb on - strand, within GFF146 at 141.664 kb on + strand, within GFF146 at 141.664 kb on + strand, within GFF146 at 141.664 kb on + strand, within GFF146 at 141.665 kb on - strand, within GFF146 at 141.674 kb on + strand, within GFF146 at 141.675 kb on + strand, within GFF146 at 141.684 kb on - strand, within GFF146 at 141.685 kb on + strand, within GFF146 at 141.695 kb on + strand, within GFF146 at 141.695 kb on + strand, within GFF146 at 141.699 kb on - strand, within GFF146 at 141.702 kb on - strand, within GFF146 at 141.703 kb on - strand, within GFF146 at 141.710 kb on + strand, within GFF146 at 141.710 kb on - strand, within GFF146 at 141.783 kb on - strand, within GFF146 at 141.826 kb on + strand, within GFF146 at 141.921 kb on + strand, within GFF146 at 142.030 kb on - strand, within GFF146 at 142.031 kb on - strand, within GFF146 at 142.057 kb on + strand, within GFF146 at 142.057 kb on + strand, within GFF146 at 142.057 kb on + strand, within GFF146 at 142.057 kb on + strand, within GFF146 at 142.065 kb on - strand, within GFF146 at 142.065 kb on - strand, within GFF146 at 142.065 kb on - strand, within GFF146 at 142.086 kb on + strand, within GFF146 at 142.096 kb on + strand, within GFF146 at 142.099 kb on - strand, within GFF146 at 142.099 kb on - strand, within GFF146 at 142.131 kb on - strand, within GFF146 at 142.133 kb on - strand, within GFF146 at 142.159 kb on + strand, within GFF146 at 142.167 kb on - strand, within GFF146 at 142.187 kb on - strand, within GFF146 at 142.206 kb on + strand, within GFF146 at 142.206 kb on + strand, within GFF146 at 142.206 kb on + strand, within GFF146 at 142.259 kb on + strand, within GFF146 at 142.259 kb on + strand, within GFF146 at 142.267 kb on - strand, within GFF146 at 142.305 kb on - strand, within GFF146 at 142.315 kb on - strand, within GFF146 at 142.343 kb on + strand, within GFF146 at 142.358 kb on + strand, within GFF146 at 142.373 kb on - strand, within GFF146 at 142.415 kb on + strand, within GFF146 at 142.442 kb on - strand, within GFF146 at 142.461 kb on + strand, within GFF146 at 142.481 kb on + strand, within GFF146 at 142.485 kb on - strand, within GFF146 at 142.485 kb on - strand, within GFF146 at 142.485 kb on - strand, within GFF146 at 142.490 kb on - strand, within GFF146 at 142.496 kb on + strand, within GFF146 at 142.505 kb on + strand, within GFF146 at 142.507 kb on + strand, within GFF146 at 142.507 kb on + strand, within GFF146 at 142.524 kb on - strand, within GFF146 at 142.529 kb on - strand, within GFF146 at 142.592 kb on - strand, within GFF146 at 142.647 kb on + strand, within GFF146 at 142.655 kb on - strand, within GFF146 at 142.793 kb on - strand at 142.805 kb on - strand at 142.844 kb on + strand at 142.852 kb on + strand at 142.857 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.860 kb on + strand at 142.868 kb on - strand at 142.868 kb on - strand at 142.868 kb on - strand at 142.868 kb on - strand at 142.868 kb on - strand at 142.870 kb on + strand at 142.878 kb on + strand at 142.878 kb on + strand at 142.879 kb on + strand at 142.893 kb on - strand at 142.899 kb on - strand at 142.926 kb on - strand at 142.949 kb on - strand at 142.955 kb on - strand at 143.005 kb on + strand at 143.005 kb on + strand at 143.089 kb on + strand at 143.089 kb on + strand at 143.089 kb on + strand at 143.097 kb on - strand at 143.097 kb on - strand at 143.108 kb on - strand at 143.150 kb on - strand at 143.211 kb on + strand, within GFF147 at 143.214 kb on - strand, within GFF147 at 143.281 kb on + strand, within GFF147 at 143.289 kb on - strand, within GFF147 at 143.298 kb on + strand, within GFF147 at 143.323 kb on + strand, within GFF147 at 143.456 kb on + strand, within GFF147 at 143.457 kb on + strand, within GFF147 at 143.475 kb on - strand, within GFF147 at 143.475 kb on - strand, within GFF147 at 143.497 kb on + strand, within GFF147 at 143.500 kb on - strand, within GFF147 at 143.537 kb on + strand, within GFF147 at 143.537 kb on - strand, within GFF147 at 143.537 kb on - strand, within GFF147 at 143.628 kb on - strand, within GFF147 at 143.628 kb on - strand, within GFF147 at 143.644 kb on + strand, within GFF147 at 143.652 kb on - strand, within GFF147 at 143.652 kb on - strand, within GFF147 at 143.662 kb on - strand, within GFF147 at 143.667 kb on + strand, within GFF147 at 143.677 kb on + strand, within GFF147 at 143.754 kb on - strand, within GFF147 at 143.768 kb on + strand, within GFF147 at 143.834 kb on + strand, within GFF147 at 143.854 kb on + strand, within GFF147 at 143.862 kb on - strand, within GFF147 at 143.877 kb on - strand, within GFF147 at 143.882 kb on + strand, within GFF147
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 140,802 + -0.7 140,810 - -0.5 140,850 - -0.8 140,876 + +0.3 140,962 + -0.4 140,962 + -0.2 140,962 + -1.2 140,970 - -0.6 140,970 - -0.1 140,984 + -0.7 141,010 + GFF146 0.10 -1.2 141,010 + GFF146 0.10 +0.6 141,010 + GFF146 0.10 -1.0 141,010 + GFF146 0.10 +0.7 141,014 + GFF146 0.10 +0.9 141,014 + GFF146 0.10 +0.4 141,015 + GFF146 0.10 +1.4 141,015 + GFF146 0.10 -1.2 141,018 - GFF146 0.11 +0.2 141,022 - GFF146 0.11 +0.5 141,023 - GFF146 0.11 -1.2 141,023 - GFF146 0.11 +0.4 141,023 - GFF146 0.11 -0.2 141,023 - GFF146 0.11 +0.1 141,036 + GFF146 0.11 -2.5 141,056 - GFF146 0.12 -1.1 141,064 + GFF146 0.13 -2.3 141,069 + GFF146 0.13 -0.5 141,069 + GFF146 0.13 +0.7 141,069 + GFF146 0.13 +0.7 141,077 + GFF146 0.13 -0.4 141,077 - GFF146 0.13 -0.2 141,082 + GFF146 0.14 -1.0 141,082 + GFF146 0.14 +0.8 141,082 + GFF146 0.14 +0.5 141,090 - GFF146 0.14 -0.2 141,090 - GFF146 0.14 +0.3 141,090 - GFF146 0.14 -0.6 141,095 - GFF146 0.14 -0.5 141,095 - GFF146 0.14 -0.2 141,100 - GFF146 0.14 -1.8 141,136 - GFF146 0.16 +0.5 141,143 + GFF146 0.17 -1.3 141,157 - GFF146 0.17 +0.3 141,162 + GFF146 0.17 +0.1 141,186 + GFF146 0.19 +0.2 141,187 + GFF146 0.19 -0.1 141,206 + GFF146 0.19 -0.4 141,214 - GFF146 0.20 +0.3 141,214 - GFF146 0.20 +0.5 141,216 + GFF146 0.20 -0.1 141,221 + GFF146 0.20 +0.1 141,229 - GFF146 0.21 +1.1 141,229 - GFF146 0.21 +1.6 141,273 + GFF146 0.23 -1.3 141,278 + GFF146 0.23 -1.5 141,281 - GFF146 0.23 +0.2 141,281 - GFF146 0.23 -0.4 141,281 - GFF146 0.23 +1.4 141,307 - GFF146 0.24 -0.5 141,401 + GFF146 0.29 +0.0 141,409 - GFF146 0.29 +0.2 141,431 + GFF146 0.30 -1.6 141,439 + GFF146 0.30 -1.4 141,486 + GFF146 0.33 +0.5 141,494 - GFF146 0.33 -0.2 141,494 - GFF146 0.33 -1.0 141,528 + GFF146 0.35 +1.3 141,528 + GFF146 0.35 +0.4 141,550 + GFF146 0.36 -0.2 141,573 + GFF146 0.37 +0.2 141,573 + GFF146 0.37 +1.3 141,573 + GFF146 0.37 +2.2 141,581 - GFF146 0.37 -1.5 141,581 - GFF146 0.37 +0.0 141,581 - GFF146 0.37 -0.3 141,581 - GFF146 0.37 +0.5 141,605 + GFF146 0.38 +0.9 141,611 + GFF146 0.39 -2.1 141,620 + GFF146 0.39 -0.3 141,628 - GFF146 0.39 -0.2 141,664 + GFF146 0.41 +1.0 141,664 + GFF146 0.41 -0.5 141,664 + GFF146 0.41 -0.5 141,665 - GFF146 0.41 -0.1 141,674 + GFF146 0.41 -1.1 141,675 + GFF146 0.42 +1.1 141,684 - GFF146 0.42 +0.6 141,685 + GFF146 0.42 +0.6 141,695 + GFF146 0.42 -0.8 141,695 + GFF146 0.42 -0.8 141,699 - GFF146 0.43 -0.3 141,702 - GFF146 0.43 -0.1 141,703 - GFF146 0.43 +0.7 141,710 + GFF146 0.43 +0.4 141,710 - GFF146 0.43 -0.5 141,783 - GFF146 0.47 -0.3 141,826 + GFF146 0.49 +0.6 141,921 + GFF146 0.53 +0.7 142,030 - GFF146 0.58 -0.0 142,031 - GFF146 0.58 -0.2 142,057 + GFF146 0.59 +0.5 142,057 + GFF146 0.59 +0.6 142,057 + GFF146 0.59 -2.3 142,057 + GFF146 0.59 +2.2 142,065 - GFF146 0.60 -0.8 142,065 - GFF146 0.60 +0.0 142,065 - GFF146 0.60 -0.1 142,086 + GFF146 0.61 +0.6 142,096 + GFF146 0.61 -0.2 142,099 - GFF146 0.61 +1.5 142,099 - GFF146 0.61 +0.3 142,131 - GFF146 0.63 +2.1 142,133 - GFF146 0.63 +1.2 142,159 + GFF146 0.64 +0.4 142,167 - GFF146 0.65 +0.7 142,187 - GFF146 0.66 +0.3 142,206 + GFF146 0.66 -0.2 142,206 + GFF146 0.66 -0.9 142,206 + GFF146 0.66 +0.2 142,259 + GFF146 0.69 -1.2 142,259 + GFF146 0.69 +2.0 142,267 - GFF146 0.69 -1.9 142,305 - GFF146 0.71 -0.8 142,315 - GFF146 0.72 +1.0 142,343 + GFF146 0.73 -0.4 142,358 + GFF146 0.74 -0.2 142,373 - GFF146 0.74 +1.7 142,415 + GFF146 0.76 -0.9 142,442 - GFF146 0.78 -0.8 142,461 + GFF146 0.78 +1.2 142,481 + GFF146 0.79 -0.1 142,485 - GFF146 0.80 -0.1 142,485 - GFF146 0.80 +0.9 142,485 - GFF146 0.80 -0.5 142,490 - GFF146 0.80 -0.5 142,496 + GFF146 0.80 +0.2 142,505 + GFF146 0.81 -2.1 142,507 + GFF146 0.81 +1.0 142,507 + GFF146 0.81 +0.4 142,524 - GFF146 0.81 -0.5 142,529 - GFF146 0.82 -0.2 142,592 - GFF146 0.85 +0.2 142,647 + GFF146 0.87 +0.8 142,655 - GFF146 0.88 -0.5 142,793 - +0.3 142,805 - -0.3 142,844 + -1.4 142,852 + +1.7 142,857 + +0.8 142,860 + +0.1 142,860 + +0.7 142,860 + +0.8 142,860 + +1.0 142,860 + -1.8 142,860 + -0.8 142,860 + +0.2 142,860 + -0.2 142,860 + +0.4 142,860 + +0.7 142,860 + -0.2 142,860 + +0.1 142,868 - +2.0 142,868 - +0.5 142,868 - +0.7 142,868 - -0.3 142,868 - +0.1 142,870 + +0.8 142,878 + -1.2 142,878 + +0.0 142,879 + -0.6 142,893 - +0.4 142,899 - +1.0 142,926 - +1.1 142,949 - -1.6 142,955 - +0.2 143,005 + -0.7 143,005 + -1.2 143,089 + +0.1 143,089 + -1.3 143,089 + +1.4 143,097 - +0.4 143,097 - +1.0 143,108 - +1.4 143,150 - -0.4 143,211 + GFF147 0.14 +1.7 143,214 - GFF147 0.14 +0.2 143,281 + GFF147 0.19 -1.8 143,289 - GFF147 0.20 -1.0 143,298 + GFF147 0.21 +2.4 143,323 + GFF147 0.22 -0.4 143,456 + GFF147 0.33 -1.6 143,457 + GFF147 0.33 -0.6 143,475 - GFF147 0.34 -1.5 143,475 - GFF147 0.34 +0.2 143,497 + GFF147 0.36 -1.2 143,500 - GFF147 0.36 -0.7 143,537 + GFF147 0.39 +0.4 143,537 - GFF147 0.39 -1.5 143,537 - GFF147 0.39 +2.0 143,628 - GFF147 0.46 +0.5 143,628 - GFF147 0.46 +0.6 143,644 + GFF147 0.47 -0.6 143,652 - GFF147 0.48 +0.4 143,652 - GFF147 0.48 +1.6 143,662 - GFF147 0.48 +1.1 143,667 + GFF147 0.49 -1.6 143,677 + GFF147 0.50 +0.4 143,754 - GFF147 0.56 +2.1 143,768 + GFF147 0.57 +0.4 143,834 + GFF147 0.62 -2.5 143,854 + GFF147 0.63 +0.9 143,862 - GFF147 0.64 +1.0 143,877 - GFF147 0.65 -0.4 143,882 + GFF147 0.65 -1.6
Or see this region's nucleotide sequence