Strain Fitness in Sphingobium sp. HT1-2 around GFF1389

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,412,510	-				-0.2
1,412,510	-				-1.3
1,412,519	-				-0.9
1,412,533	+				-0.1
1,412,533	+				-0.1
1,412,561	+		GFF1388	0.10	-1.7
1,412,565	+		GFF1388	0.11	-1.5
1,412,624	+		GFF1388	0.16	-1.2
1,412,632	-		GFF1388	0.17	+0.4
1,412,632	-		GFF1388	0.17	+0.6
1,412,632	-		GFF1388	0.17	-1.4
1,412,694	-		GFF1388	0.23	-0.7
1,412,695	-		GFF1388	0.23	-1.3
1,412,696	+		GFF1388	0.23	-1.2
1,412,696	+		GFF1388	0.23	-0.8
1,412,701	+		GFF1388	0.24	-0.3
1,412,704	-		GFF1388	0.24	-1.5
1,412,704	-		GFF1388	0.24	-0.3
1,412,704	-		GFF1388	0.24	-1.6
1,412,709	-		GFF1388	0.25	-0.6
1,412,709	-		GFF1388	0.25	+0.1
1,412,744	-		GFF1388	0.28	-0.5
1,412,748	+		GFF1388	0.28	-1.6
1,412,749	+		GFF1388	0.29	-1.1
1,412,755	+		GFF1388	0.29	+0.2
1,412,755	+		GFF1388	0.29	+0.5
1,412,755	+		GFF1388	0.29	-0.1
1,412,756	-		GFF1388	0.29	+0.8
1,412,776	+		GFF1388	0.31	-1.2
1,412,776	+		GFF1388	0.31	-0.8
1,412,776	+		GFF1388	0.31	+0.1
1,412,784	-		GFF1388	0.32	+0.8
1,412,798	+		GFF1388	0.33	+0.6
1,412,798	+		GFF1388	0.33	-2.7
1,412,798	+		GFF1388	0.33	-0.1
1,412,806	-		GFF1388	0.34	-0.9
1,412,813	-		GFF1388	0.35	-0.5
1,412,842	+		GFF1388	0.38	-0.9
1,412,842	+		GFF1388	0.38	+0.7
1,412,842	+		GFF1388	0.38	+0.7
1,412,842	+		GFF1388	0.38	+0.6
1,412,842	-		GFF1388	0.38	-0.7
1,412,844	-		GFF1388	0.38	+0.1
1,412,849	-		GFF1388	0.38	-0.0
1,412,849	-		GFF1388	0.38	-1.1
1,412,860	-		GFF1388	0.39	+0.1
1,412,897	+		GFF1388	0.43	+0.2
1,412,900	-		GFF1388	0.43	+0.5
1,412,905	-		GFF1388	0.44	+0.6
1,413,000	-		GFF1388	0.53	-1.3
1,413,000	-		GFF1388	0.53	-0.1
1,413,011	+		GFF1388	0.54	+0.4
1,413,011	+		GFF1388	0.54	-1.4
1,413,016	+		GFF1388	0.55	+1.3
1,413,019	-		GFF1388	0.55	-1.3
1,413,019	-		GFF1388	0.55	-1.2
1,413,019	-		GFF1388	0.55	-0.9
1,413,025	-		GFF1388	0.56	-0.1
1,413,037	+		GFF1388	0.57	-0.3
1,413,037	+		GFF1388	0.57	+0.3
1,413,037	+		GFF1388	0.57	+0.2
1,413,037	+		GFF1388	0.57	+0.9
1,413,037	+		GFF1388	0.57	+0.8
1,413,037	+		GFF1388	0.57	+0.1
1,413,042	+		GFF1388	0.57	+1.1
1,413,042	+		GFF1388	0.57	-2.3
1,413,045	-		GFF1388	0.57	-1.5
1,413,045	-		GFF1388	0.57	-0.5
1,413,069	-		GFF1388	0.60	-1.8
1,413,101	-		GFF1388	0.63	-1.2
1,413,105	+		GFF1388	0.63	-2.2
1,413,105	+		GFF1388	0.63	-1.5
1,413,105	+		GFF1388	0.63	+0.5
1,413,105	+		GFF1388	0.63	-1.5
1,413,105	+		GFF1388	0.63	-0.8
1,413,105	+		GFF1388	0.63	-2.0
1,413,105	+		GFF1388	0.63	+0.1
1,413,105	+		GFF1388	0.63	-0.3
1,413,105	+		GFF1388	0.63	-0.6
1,413,105	+		GFF1388	0.63	-0.5
1,413,113	-		GFF1388	0.64	+0.2
1,413,113	-		GFF1388	0.64	-0.9
1,413,113	-		GFF1388	0.64	+0.4
1,413,113	-		GFF1388	0.64	+0.4
1,413,113	-		GFF1388	0.64	+1.5
1,413,113	-		GFF1388	0.64	-1.2
1,413,113	-		GFF1388	0.64	-1.5
1,413,113	-		GFF1388	0.64	-0.2
1,413,113	-		GFF1388	0.64	-1.4
1,413,122	-		GFF1388	0.65	+0.3
1,413,141	+		GFF1388	0.67	+0.1
1,413,141	+		GFF1388	0.67	-1.6
1,413,148	+		GFF1388	0.68	+1.6
1,413,161	-		GFF1388	0.69	-1.5
1,413,169	+		GFF1388	0.70	+0.4
1,413,192	-		GFF1388	0.72	-0.2
1,413,192	-		GFF1388	0.72	+1.2
1,413,196	-		GFF1388	0.72	-0.1
1,413,196	-		GFF1388	0.72	-1.4
1,413,196	-		GFF1388	0.72	-0.5
1,413,248	+		GFF1388	0.77	-0.4
1,413,256	-		GFF1388	0.78	-1.8
1,413,268	+		GFF1388	0.79	-1.9
1,413,276	-		GFF1388	0.80	+0.1
1,413,308	+		GFF1388	0.83	-0.8
1,413,314	+		GFF1388	0.84	-0.8
1,413,314	+		GFF1388	0.84	-0.2
1,413,321	+		GFF1388	0.84	-0.9
1,413,322	-		GFF1388	0.85	-1.3
1,413,336	-		GFF1388	0.86	-0.9
1,413,361	-		GFF1388	0.88	-0.5
1,413,384	-				-0.1
1,413,386	+				-0.7
1,413,423	+				-0.0
1,413,426	+				-1.0
1,413,431	-				-1.9
1,413,431	-				-0.6
1,413,439	+				+0.9
1,413,465	+				+0.7
1,413,486	+				-0.4
1,413,486	-				+1.5
1,413,499	+				-0.6
1,413,507	-				-0.8
1,413,511	+				-1.3
1,413,512	+				-0.5
1,413,519	-				-1.4
1,413,519	-				-1.8
1,413,519	-				-1.4
1,413,519	-				-0.8
1,413,524	-				-0.2
1,413,572	+				-0.0
1,413,576	+		GFF1389	0.10	-0.8
1,413,577	+		GFF1389	0.10	-0.3
1,413,577	+		GFF1389	0.10	+1.2
1,413,577	+		GFF1389	0.10	+0.5
1,413,577	+		GFF1389	0.10	-0.2
1,413,577	+		GFF1389	0.10	-0.2
1,413,577	+		GFF1389	0.10	-0.0
1,413,577	+		GFF1389	0.10	+0.9
1,413,577	+		GFF1389	0.10	-0.3
1,413,577	+		GFF1389	0.10	+0.3
1,413,577	+		GFF1389	0.10	-0.5
1,413,577	+		GFF1389	0.10	-1.1
1,413,577	+		GFF1389	0.10	-1.5
1,413,577	+		GFF1389	0.10	+0.4
1,413,577	+		GFF1389	0.10	-1.7
1,413,577	+		GFF1389	0.10	-0.5
1,413,577	+		GFF1389	0.10	+1.9
1,413,577	+		GFF1389	0.10	-1.5
1,413,577	+		GFF1389	0.10	+0.1
1,413,577	+		GFF1389	0.10	-0.6
1,413,578	-		GFF1389	0.10	-0.0
1,413,579	-		GFF1389	0.10	-0.3
1,413,585	-		GFF1389	0.11	-1.5
1,413,585	-		GFF1389	0.11	+0.5
1,413,585	-		GFF1389	0.11	-1.0
1,413,585	-		GFF1389	0.11	-0.8
1,413,585	-		GFF1389	0.11	-1.8
1,413,585	-		GFF1389	0.11	-1.5
1,413,585	-		GFF1389	0.11	-0.1
1,413,585	-		GFF1389	0.11	+0.6
1,413,585	-		GFF1389	0.11	+0.2
1,413,585	-		GFF1389	0.11	-2.2
1,413,585	-		GFF1389	0.11	-2.7
1,413,585	-		GFF1389	0.11	-0.1
1,413,585	-		GFF1389	0.11	-1.7
1,413,585	-		GFF1389	0.11	-1.2
1,413,585	-		GFF1389	0.11	-1.5
1,413,585	-		GFF1389	0.11	-0.4
1,413,585	-		GFF1389	0.11	+0.5
1,413,585	-		GFF1389	0.11	-0.7
1,413,594	-		GFF1389	0.12	-0.1
1,413,607	+		GFF1389	0.14	-1.9
1,413,607	+		GFF1389	0.14	+0.4
1,413,612	+		GFF1389	0.15	-1.3
1,413,664	+		GFF1389	0.22	+0.7
1,413,672	-		GFF1389	0.23	+1.3
1,413,674	-		GFF1389	0.23	-1.6
1,413,680	+		GFF1389	0.24	-1.3
1,413,680	+		GFF1389	0.24	-1.9
1,413,680	+		GFF1389	0.24	-1.0
1,413,681	-		GFF1389	0.24	+1.1
1,413,683	+		GFF1389	0.24	-0.4
1,413,685	+		GFF1389	0.25	-0.1
1,413,688	-		GFF1389	0.25	-0.1
1,413,688	-		GFF1389	0.25	+2.5
1,413,688	-		GFF1389	0.25	-0.0
1,413,688	-		GFF1389	0.25	+0.3
1,413,688	-		GFF1389	0.25	+0.4
1,413,688	-		GFF1389	0.25	+0.5
1,413,688	-		GFF1389	0.25	-0.9
1,413,688	-		GFF1389	0.25	-0.3
1,413,688	-		GFF1389	0.25	-1.6
1,413,688	-		GFF1389	0.25	+1.2
1,413,688	-		GFF1389	0.25	+0.9
1,413,688	-		GFF1389	0.25	-0.2
1,413,688	-		GFF1389	0.25	+0.7
1,413,691	+		GFF1389	0.26	+0.6
1,413,693	-		GFF1389	0.26	+1.0
1,413,698	-		GFF1389	0.26	-0.3
1,413,725	+		GFF1389	0.30	-0.6
1,413,733	-		GFF1389	0.31	-0.9
1,413,734	-		GFF1389	0.31	+0.1
1,413,742	-		GFF1389	0.32	+0.6
1,413,742	-		GFF1389	0.32	-1.3
1,413,759	-		GFF1389	0.35	-0.1
1,413,770	+		GFF1389	0.36	+0.6
1,413,770	+		GFF1389	0.36	+0.8
1,413,770	+		GFF1389	0.36	-0.2
1,413,770	+		GFF1389	0.36	-1.3
1,413,770	+		GFF1389	0.36	-2.6
1,413,770	+		GFF1389	0.36	-0.7
1,413,770	+		GFF1389	0.36	+0.7
1,413,802	+		GFF1389	0.40	-0.7
1,413,808	+		GFF1389	0.41	+1.0
1,413,808	+		GFF1389	0.41	+0.5
1,413,821	-		GFF1389	0.43	-0.4
1,413,840	+		GFF1389	0.46	-0.5
1,413,845	-		GFF1389	0.46	+0.1
1,413,847	+		GFF1389	0.47	+0.1
1,413,847	-		GFF1389	0.47	-0.8
1,413,852	-		GFF1389	0.47	+1.1
1,413,861	-		GFF1389	0.48	-0.0
1,413,864	+		GFF1389	0.49	+0.5
1,413,864	+		GFF1389	0.49	+0.3
1,413,869	+		GFF1389	0.50	-0.8
1,413,872	-		GFF1389	0.50	-1.1
1,413,872	-		GFF1389	0.50	-0.8
1,413,872	-		GFF1389	0.50	+0.7
1,413,923	+		GFF1389	0.57	+1.4
1,413,931	-		GFF1389	0.58	-1.7
1,413,932	-		GFF1389	0.58	+0.1
1,413,932	-		GFF1389	0.58	-2.2
1,413,948	+		GFF1389	0.60	-0.4
1,413,948	+		GFF1389	0.60	+0.2
1,413,958	-		GFF1389	0.62	-0.5
1,413,960	+		GFF1389	0.62	-1.3
1,414,015	-		GFF1389	0.69	-0.2
1,414,040	+		GFF1389	0.73	-1.0
1,414,040	+		GFF1389	0.73	-1.6
1,414,040	+		GFF1389	0.73	-1.2
1,414,040	+		GFF1389	0.73	+0.2
1,414,040	+		GFF1389	0.73	+0.1
1,414,040	+		GFF1389	0.73	-0.7
1,414,040	+		GFF1389	0.73	+0.6
1,414,040	+		GFF1389	0.73	-0.5
1,414,040	+		GFF1389	0.73	+0.6
1,414,047	-		GFF1389	0.74	-0.9
1,414,048	-		GFF1389	0.74	-2.0
1,414,048	-		GFF1389	0.74	-1.0
1,414,048	-		GFF1389	0.74	-1.9
1,414,048	-		GFF1389	0.74	+0.6
1,414,048	-		GFF1389	0.74	+1.3
1,414,054	-		GFF1389	0.74	-0.8
1,414,055	+		GFF1389	0.75	-1.7
1,414,088	-		GFF1389	0.79	-0.9
1,414,095	+		GFF1389	0.80	-0.7
1,414,100	+		GFF1389	0.81	-0.3
1,414,139	+		GFF1389	0.86	+0.9
1,414,139	+		GFF1389	0.86	-0.7
1,414,139	+		GFF1389	0.86	-1.0
1,414,139	-		GFF1389	0.86	-0.1
1,414,139	-		GFF1389	0.86	-0.5
1,414,141	+		GFF1389	0.86	-0.7
1,414,141	+		GFF1389	0.86	-0.1
1,414,141	+		GFF1389	0.86	-0.4
1,414,144	-		GFF1389	0.87	-1.7
1,414,147	-		GFF1389	0.87	-1.8
1,414,149	-		GFF1389	0.87	-0.9
1,414,149	-		GFF1389	0.87	-0.4
1,414,149	-		GFF1389	0.87	-0.5
1,414,149	-		GFF1389	0.87	-0.8
1,414,154	-		GFF1389	0.88	-1.5
1,414,162	+		GFF1389	0.89	+1.0
1,414,165	-		GFF1389	0.89	-1.5
1,414,167	+		GFF1389	0.90	+1.1
1,414,167	+		GFF1389	0.90	-1.9
1,414,170	-				-0.8
1,414,175	+				+0.3
1,414,175	-				-0.2
1,414,175	-				-1.4
1,414,175	-				+0.6
1,414,175	-				-1.7
1,414,183	-				-0.9
1,414,183	-				-2.0
1,414,183	-				-2.1
1,414,197	-				+1.1
1,414,197	-				+0.7
1,414,197	-				-0.5
1,414,197	-				-1.7
1,414,197	-				-0.5
1,414,197	-				-1.5
1,414,197	-				+0.4
1,414,197	-				-0.3
1,414,202	+				-0.3
1,414,208	+				-0.6
1,414,210	-				+0.9
1,414,226	+				+0.5
1,414,226	+				-0.4
1,414,234	-				+0.1
1,414,234	-				+0.5
1,414,236	+				-0.3
1,414,236	+				-1.7
1,414,236	+				-2.2
1,414,236	+				-0.0
1,414,236	+				+0.1
1,414,239	-				+0.4
1,414,239	-				+0.1
1,414,244	-				-0.6
1,414,244	-				-0.1
1,414,258	-				-2.4
1,414,311	+				+0.3
1,414,311	+				-0.1
1,414,318	-				-0.9
1,414,318	-				+0.0
1,414,319	-				+0.9
1,414,351	+				+0.1
1,414,357	-				-1.2
1,414,405	+				+0.2
1,414,442	+		GFF1390	0.13	+0.7
1,414,442	+		GFF1390	0.13	-0.4
1,414,442	+		GFF1390	0.13	-1.2
1,414,456	-		GFF1390	0.14	+0.2
1,414,456	-		GFF1390	0.14	-1.8
1,414,456	-		GFF1390	0.14	-0.5
1,414,469	-		GFF1390	0.15	-2.0
1,414,475	+		GFF1390	0.15	-0.4
1,414,482	-		GFF1390	0.16	+0.4
1,414,504	+		GFF1390	0.18	-0.9
1,414,504	+		GFF1390	0.18	+0.2
1,414,509	+		GFF1390	0.18	+0.1
1,414,512	-		GFF1390	0.18	+0.7
1,414,512	-		GFF1390	0.18	+0.3
1,414,512	-		GFF1390	0.18	-1.0
1,414,512	-		GFF1390	0.18	-0.1
1,414,517	-		GFF1390	0.19	-0.0
1,414,520	+		GFF1390	0.19	-0.4
1,414,528	-		GFF1390	0.20	+1.5
1,414,545	+		GFF1390	0.21	-1.3
1,414,545	+		GFF1390	0.21	+1.0
1,414,547	+		GFF1390	0.21	+1.1
1,414,575	+		GFF1390	0.23	-0.7
1,414,596	+		GFF1390	0.25	+0.7
1,414,606	+		GFF1390	0.26	-0.5
1,414,633	+		GFF1390	0.28	+0.4
1,414,641	-		GFF1390	0.29	-1.3
1,414,655	+		GFF1390	0.30	-1.4
1,414,655	+		GFF1390	0.30	-0.5
1,414,688	-		GFF1390	0.33	+0.2
1,414,690	+		GFF1390	0.33	-0.5
1,414,694	+		GFF1390	0.33	+1.2
1,414,695	+		GFF1390	0.33	+0.3
1,414,695	+		GFF1390	0.33	-1.7
1,414,695	-		GFF1390	0.33	+0.6
1,414,698	-		GFF1390	0.33	-0.4
1,414,711	+		GFF1390	0.34	+0.1
1,414,720	+		GFF1390	0.35	-1.2
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