Strain Fitness in Sphingobium sp. HT1-2 around GFF134

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF133 and GFF134 overlap by 4 nucleotidesGFF134 and GFF135 are separated by 226 nucleotides GFF133 - Biotin synthase (EC 2.8.1.6), at 127,952 to 128,965 GFF133 GFF134 - hypothetical protein, at 128,962 to 129,078 GFF134 GFF135 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3), at 129,305 to 131,305 GFF135 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.984 kb on + strandat 127.985 kb on + strandat 128.062 kb on - strand, within GFF133at 128.092 kb on + strand, within GFF133at 128.092 kb on + strand, within GFF133at 128.100 kb on + strand, within GFF133at 128.100 kb on - strand, within GFF133at 128.100 kb on - strand, within GFF133at 128.103 kb on - strand, within GFF133at 128.127 kb on + strand, within GFF133at 128.134 kb on + strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.135 kb on - strand, within GFF133at 128.148 kb on + strand, within GFF133at 128.161 kb on - strand, within GFF133at 128.191 kb on + strand, within GFF133at 128.207 kb on - strand, within GFF133at 128.218 kb on - strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.230 kb on + strand, within GFF133at 128.237 kb on + strand, within GFF133at 128.247 kb on + strand, within GFF133at 128.278 kb on - strand, within GFF133at 128.278 kb on - strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.280 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.317 kb on + strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.325 kb on - strand, within GFF133at 128.371 kb on - strand, within GFF133at 128.430 kb on - strand, within GFF133at 128.486 kb on + strand, within GFF133at 128.486 kb on + strand, within GFF133at 128.494 kb on - strand, within GFF133at 128.555 kb on + strand, within GFF133at 128.563 kb on - strand, within GFF133at 128.572 kb on - strand, within GFF133at 128.596 kb on + strand, within GFF133at 128.600 kb on + strand, within GFF133at 128.612 kb on + strand, within GFF133at 128.615 kb on + strand, within GFF133at 128.620 kb on - strand, within GFF133at 128.620 kb on - strand, within GFF133at 128.632 kb on - strand, within GFF133at 128.655 kb on + strand, within GFF133at 128.655 kb on - strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.660 kb on + strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.668 kb on - strand, within GFF133at 128.711 kb on + strand, within GFF133at 128.724 kb on + strand, within GFF133at 128.724 kb on + strand, within GFF133at 128.742 kb on - strand, within GFF133at 128.757 kb on + strand, within GFF133at 128.762 kb on + strand, within GFF133at 128.765 kb on - strand, within GFF133at 128.767 kb on + strand, within GFF133at 128.770 kb on - strand, within GFF133at 128.770 kb on - strand, within GFF133at 128.855 kb on + strand, within GFF133at 128.873 kb on + strandat 128.908 kb on + strandat 128.908 kb on + strandat 128.918 kb on + strandat 128.960 kb on + strandat 128.970 kb on + strandat 128.973 kb on + strandat 129.008 kb on + strand, within GFF134at 129.038 kb on - strand, within GFF134at 129.038 kb on - strand, within GFF134at 129.050 kb on - strand, within GFF134at 129.061 kb on + strand, within GFF134at 129.095 kb on + strandat 129.120 kb on + strandat 129.120 kb on + strandat 129.128 kb on - strandat 129.137 kb on + strandat 129.147 kb on + strandat 129.179 kb on - strandat 129.252 kb on - strandat 129.356 kb on + strandat 129.366 kb on + strandat 129.366 kb on + strandat 129.368 kb on + strandat 129.376 kb on - strandat 129.376 kb on - strandat 129.390 kb on - strandat 129.390 kb on - strandat 129.390 kb on - strandat 129.390 kb on - strandat 129.400 kb on - strandat 129.402 kb on + strandat 129.442 kb on + strandat 129.451 kb on + strandat 129.476 kb on + strandat 129.476 kb on + strandat 129.481 kb on + strandat 129.484 kb on - strandat 129.489 kb on - strandat 129.489 kb on - strandat 129.539 kb on + strand, within GFF135at 129.708 kb on + strand, within GFF135at 129.726 kb on + strand, within GFF135at 129.732 kb on + strand, within GFF135at 129.763 kb on - strand, within GFF135at 129.773 kb on - strand, within GFF135at 129.781 kb on + strand, within GFF135at 129.781 kb on + strand, within GFF135at 129.783 kb on - strand, within GFF135at 129.783 kb on - strand, within GFF135at 129.783 kb on - strand, within GFF135at 129.826 kb on - strand, within GFF135at 129.846 kb on + strand, within GFF135at 129.854 kb on - strand, within GFF135at 129.861 kb on + strand, within GFF135at 129.877 kb on - strand, within GFF135at 129.877 kb on - strand, within GFF135at 129.961 kb on + strand, within GFF135at 129.975 kb on + strand, within GFF135at 130.034 kb on + strand, within GFF135at 130.040 kb on + strand, within GFF135

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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127,984 + +1.2
127,985 + +0.4
128,062 - GFF133 0.11 -0.9
128,092 + GFF133 0.14 +1.0
128,092 + GFF133 0.14 -0.6
128,100 + GFF133 0.15 +0.5
128,100 - GFF133 0.15 +0.5
128,100 - GFF133 0.15 -0.6
128,103 - GFF133 0.15 +0.5
128,127 + GFF133 0.17 +1.6
128,134 + GFF133 0.18 -0.9
128,135 - GFF133 0.18 -1.6
128,135 - GFF133 0.18 +1.2
128,135 - GFF133 0.18 -0.0
128,135 - GFF133 0.18 +0.1
128,148 + GFF133 0.19 -0.2
128,161 - GFF133 0.21 -0.4
128,191 + GFF133 0.24 -0.2
128,207 - GFF133 0.25 +0.3
128,218 - GFF133 0.26 -1.0
128,230 + GFF133 0.27 -2.8
128,230 + GFF133 0.27 -0.0
128,230 + GFF133 0.27 +0.8
128,237 + GFF133 0.28 +0.6
128,247 + GFF133 0.29 +0.2
128,278 - GFF133 0.32 +0.1
128,278 - GFF133 0.32 -2.7
128,280 + GFF133 0.32 -0.4
128,280 + GFF133 0.32 -1.4
128,280 + GFF133 0.32 +0.3
128,317 + GFF133 0.36 -0.0
128,317 + GFF133 0.36 -0.4
128,317 + GFF133 0.36 +1.7
128,317 + GFF133 0.36 -0.0
128,325 - GFF133 0.37 -0.3
128,325 - GFF133 0.37 -1.1
128,325 - GFF133 0.37 -1.9
128,325 - GFF133 0.37 -0.7
128,325 - GFF133 0.37 -0.2
128,371 - GFF133 0.41 +0.5
128,430 - GFF133 0.47 -0.3
128,486 + GFF133 0.53 -0.3
128,486 + GFF133 0.53 +0.0
128,494 - GFF133 0.53 +1.1
128,555 + GFF133 0.59 -1.6
128,563 - GFF133 0.60 -0.5
128,572 - GFF133 0.61 +0.5
128,596 + GFF133 0.64 +0.8
128,600 + GFF133 0.64 -0.2
128,612 + GFF133 0.65 -0.4
128,615 + GFF133 0.65 -0.3
128,620 - GFF133 0.66 +1.4
128,620 - GFF133 0.66 -2.8
128,632 - GFF133 0.67 -0.2
128,655 + GFF133 0.69 -0.4
128,655 - GFF133 0.69 -0.4
128,660 + GFF133 0.70 -0.5
128,660 + GFF133 0.70 +0.6
128,660 + GFF133 0.70 -1.8
128,660 + GFF133 0.70 +0.1
128,660 + GFF133 0.70 -0.8
128,668 - GFF133 0.71 +1.0
128,668 - GFF133 0.71 -2.3
128,668 - GFF133 0.71 +0.8
128,668 - GFF133 0.71 -0.1
128,668 - GFF133 0.71 +1.2
128,668 - GFF133 0.71 +0.7
128,668 - GFF133 0.71 -1.7
128,668 - GFF133 0.71 -2.5
128,711 + GFF133 0.75 +0.3
128,724 + GFF133 0.76 -0.3
128,724 + GFF133 0.76 -0.2
128,742 - GFF133 0.78 +0.2
128,757 + GFF133 0.79 -0.7
128,762 + GFF133 0.80 -0.7
128,765 - GFF133 0.80 +1.0
128,767 + GFF133 0.80 +0.5
128,770 - GFF133 0.81 +0.1
128,770 - GFF133 0.81 -1.2
128,855 + GFF133 0.89 +0.3
128,873 + +0.9
128,908 + +1.1
128,908 + -0.4
128,918 + +2.0
128,960 + +0.5
128,970 + +0.3
128,973 + -0.3
129,008 + GFF134 0.39 -1.3
129,038 - GFF134 0.65 -0.2
129,038 - GFF134 0.65 -1.3
129,050 - GFF134 0.75 -1.4
129,061 + GFF134 0.85 +0.1
129,095 + -2.0
129,120 + -0.9
129,120 + -0.7
129,128 - -0.8
129,137 + +0.9
129,147 + -0.6
129,179 - -0.6
129,252 - +1.1
129,356 + -1.0
129,366 + +1.7
129,366 + -0.2
129,368 + +2.0
129,376 - +0.4
129,376 - -2.3
129,390 - -0.1
129,390 - -0.5
129,390 - +1.2
129,390 - +1.5
129,400 - -1.2
129,402 + -1.7
129,442 + +0.1
129,451 + +0.6
129,476 + +1.3
129,476 + +0.1
129,481 + +0.5
129,484 - -1.4
129,489 - -0.6
129,489 - +1.3
129,539 + GFF135 0.12 +0.0
129,708 + GFF135 0.20 +0.1
129,726 + GFF135 0.21 +1.4
129,732 + GFF135 0.21 +0.4
129,763 - GFF135 0.23 +0.7
129,773 - GFF135 0.23 +0.3
129,781 + GFF135 0.24 +0.1
129,781 + GFF135 0.24 +0.1
129,783 - GFF135 0.24 -0.2
129,783 - GFF135 0.24 -1.7
129,783 - GFF135 0.24 +0.1
129,826 - GFF135 0.26 -2.0
129,846 + GFF135 0.27 +1.5
129,854 - GFF135 0.27 -0.2
129,861 + GFF135 0.28 -0.4
129,877 - GFF135 0.29 -1.1
129,877 - GFF135 0.29 +0.8
129,961 + GFF135 0.33 +0.4
129,975 + GFF135 0.33 -0.4
130,034 + GFF135 0.36 +0.1
130,040 + GFF135 0.37 -0.0

Or see this region's nucleotide sequence