Strain Fitness in Sphingobium sp. HT1-2 around GFF1323

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,350,114	-		GFF1320	0.29	-1.5
1,350,124	+		GFF1320	0.32	+1.1
1,350,132	-		GFF1320	0.35	-0.0
1,350,136	+		GFF1320	0.36	+0.4
1,350,146	-		GFF1320	0.39	+0.0
1,350,146	-		GFF1320	0.39	-3.0
1,350,146	-		GFF1320	0.39	+0.5
1,350,148	+		GFF1320	0.40	-0.2
1,350,153	+		GFF1320	0.42	-0.7
1,350,156	-		GFF1320	0.43	-0.5
1,350,156	-		GFF1320	0.43	+0.1
1,350,171	+		GFF1320	0.48	-0.6
1,350,180	+		GFF1320	0.51	+0.1
1,350,193	-		GFF1320	0.55	-2.1
1,350,205	-		GFF1320	0.59	-0.4
1,350,254	-		GFF1320	0.75	+0.9
1,350,264	-		GFF1320	0.79	-1.3
1,350,269	-		GFF1320	0.80	-0.9
1,350,300	+				-0.3
1,350,300	+				-1.7
1,350,300	+				-1.5
1,350,300	+				+0.5
1,350,300	+				+0.5
1,350,307	-				+0.9
1,350,308	-				-0.7
1,350,308	-				+0.1
1,350,308	-				-0.9
1,350,308	-				-2.3
1,350,338	+				-1.2
1,350,339	-				-1.8
1,350,346	+				+0.2
1,350,352	-				-0.3
1,350,354	-				-0.3
1,350,356	+				-0.5
1,350,361	+		GFF1321	0.11	-1.5
1,350,366	+		GFF1321	0.12	+0.0
1,350,378	+		GFF1321	0.16	-0.2
1,350,379	-		GFF1321	0.16	-1.0
1,350,387	-		GFF1321	0.18	-1.0
1,350,387	-		GFF1321	0.18	+0.6
1,350,397	+		GFF1321	0.21	-0.7
1,350,397	+		GFF1321	0.21	-2.8
1,350,397	+		GFF1321	0.21	-0.3
1,350,397	+		GFF1321	0.21	-0.1
1,350,397	+		GFF1321	0.21	+0.3
1,350,397	+		GFF1321	0.21	+0.8
1,350,397	+		GFF1321	0.21	+0.9
1,350,402	+		GFF1321	0.23	-1.2
1,350,402	+		GFF1321	0.23	-0.9
1,350,402	+		GFF1321	0.23	+1.3
1,350,405	-		GFF1321	0.23	-0.0
1,350,405	-		GFF1321	0.23	+0.3
1,350,405	-		GFF1321	0.23	+0.3
1,350,405	-		GFF1321	0.23	+0.3
1,350,405	-		GFF1321	0.23	-1.2
1,350,410	-		GFF1321	0.25	+0.9
1,350,410	-		GFF1321	0.25	-0.4
1,350,410	-		GFF1321	0.25	+0.4
1,350,410	-		GFF1321	0.25	-0.9
1,350,416	+		GFF1321	0.27	+0.8
1,350,424	-		GFF1321	0.29	+0.1
1,350,442	-		GFF1321	0.34	-1.3
1,350,442	-		GFF1321	0.34	-0.1
1,350,480	+		GFF1321	0.45	-1.2
1,350,480	+		GFF1321	0.45	-2.3
1,350,480	+		GFF1321	0.45	-0.7
1,350,480	+		GFF1321	0.45	-0.5
1,350,480	+		GFF1321	0.45	-0.7
1,350,480	+		GFF1321	0.45	+0.9
1,350,480	+		GFF1321	0.45	-0.2
1,350,488	-		GFF1321	0.48	-0.2
1,350,488	-		GFF1321	0.48	-0.7
1,350,488	-		GFF1321	0.48	+0.1
1,350,488	-		GFF1321	0.48	-0.9
1,350,488	-		GFF1321	0.48	+1.4
1,350,488	-		GFF1321	0.48	+1.1
1,350,488	-		GFF1321	0.48	-0.0
1,350,490	+		GFF1321	0.48	-0.4
1,350,490	+		GFF1321	0.48	+0.2
1,350,490	+		GFF1321	0.48	-0.2
1,350,490	+		GFF1321	0.48	+0.4
1,350,490	+		GFF1321	0.48	+0.3
1,350,490	+		GFF1321	0.48	-0.2
1,350,490	+		GFF1321	0.48	-0.3
1,350,490	+		GFF1321	0.48	-0.4
1,350,490	+		GFF1321	0.48	-1.5
1,350,490	+		GFF1321	0.48	-0.0
1,350,490	+		GFF1321	0.48	-0.1
1,350,490	+		GFF1321	0.48	-0.9
1,350,490	+		GFF1321	0.48	+0.3
1,350,490	+		GFF1321	0.48	-1.0
1,350,490	+		GFF1321	0.48	-0.1
1,350,490	+		GFF1321	0.48	+0.2
1,350,490	+		GFF1321	0.48	-0.0
1,350,490	+		GFF1321	0.48	+0.4
1,350,498	-		GFF1321	0.50	-0.9
1,350,498	-		GFF1321	0.50	+0.4
1,350,498	-		GFF1321	0.50	-0.5
1,350,498	-		GFF1321	0.50	-1.0
1,350,498	-		GFF1321	0.50	-0.2
1,350,498	-		GFF1321	0.50	-2.4
1,350,498	-		GFF1321	0.50	+1.1
1,350,498	-		GFF1321	0.50	+0.2
1,350,498	-		GFF1321	0.50	-0.5
1,350,498	-		GFF1321	0.50	-1.2
1,350,498	-		GFF1321	0.50	+1.1
1,350,498	-		GFF1321	0.50	-0.2
1,350,498	-		GFF1321	0.50	-0.9
1,350,498	-		GFF1321	0.50	-1.3
1,350,498	-		GFF1321	0.50	-0.2
1,350,498	-		GFF1321	0.50	-0.1
1,350,498	-		GFF1321	0.50	-1.0
1,350,498	-		GFF1321	0.50	+0.9
1,350,498	-		GFF1321	0.50	+0.5
1,350,498	-		GFF1321	0.50	+1.3
1,350,513	-		GFF1321	0.55	-1.2
1,350,531	+		GFF1321	0.60	-0.3
1,350,531	+		GFF1321	0.60	-0.4
1,350,558	+		GFF1321	0.68	+0.4
1,350,567	-		GFF1321	0.70	+0.5
1,350,577	-		GFF1321	0.73	+0.3
1,350,577	-		GFF1321	0.73	-2.6
1,350,603	-		GFF1321	0.81	-0.9
1,350,623	+		GFF1321	0.87	-0.0
1,350,625	-		GFF1321	0.87	-2.4
1,350,634	+				+0.9
1,350,634	+				-0.1
1,350,634	+				+0.3
1,350,634	+				-1.2
1,350,634	+				+0.5
1,350,634	+				+0.8
1,350,634	+				-0.2
1,350,634	+				+0.6
1,350,635	-				-0.3
1,350,642	-				-1.0
1,350,642	-				-0.3
1,350,642	-				-0.3
1,350,642	-				+0.2
1,350,649	+				-1.3
1,350,649	+				-1.4
1,350,650	-				+0.7
1,350,657	-				-1.6
1,350,670	+				+0.7
1,350,670	+				-0.6
1,350,674	+				-0.1
1,350,674	+				+0.3
1,350,676	+				-0.1
1,350,676	+				-0.3
1,350,749	+		GFF1322	0.22	+0.5
1,350,781	-		GFF1322	0.31	-1.4
1,350,799	-		GFF1322	0.36	-1.5
1,350,800	-		GFF1322	0.36	-0.1
1,350,811	-		GFF1322	0.39	-0.8
1,350,820	-		GFF1322	0.41	-0.1
1,350,827	+		GFF1322	0.43	+0.3
1,350,828	+		GFF1322	0.43	+0.7
1,350,832	+		GFF1322	0.45	-0.9
1,350,832	+		GFF1322	0.45	-0.2
1,350,835	-		GFF1322	0.45	-1.6
1,350,840	-		GFF1322	0.47	-1.5
1,350,840	-		GFF1322	0.47	-0.3
1,350,855	+		GFF1322	0.51	-0.2
1,350,855	+		GFF1322	0.51	-1.3
1,350,865	+		GFF1322	0.53	-0.7
1,350,872	-		GFF1322	0.55	-0.4
1,350,873	-		GFF1322	0.55	+0.8
1,350,873	-		GFF1322	0.55	+0.2
1,350,873	-		GFF1322	0.55	+0.7
1,350,876	+		GFF1322	0.56	-1.9
1,350,876	+		GFF1322	0.56	+0.7
1,350,876	+		GFF1322	0.56	-0.5
1,350,876	+		GFF1322	0.56	+0.4
1,350,896	+		GFF1322	0.62	-1.4
1,350,896	+		GFF1322	0.62	+0.8
1,350,904	-		GFF1322	0.64	+0.2
1,350,904	-		GFF1322	0.64	+0.5
1,350,916	+		GFF1322	0.67	-1.4
1,350,916	+		GFF1322	0.67	-0.4
1,350,916	+		GFF1322	0.67	+0.1
1,350,924	-		GFF1322	0.69	-0.4
1,350,924	-		GFF1322	0.69	-0.5
1,350,924	-		GFF1322	0.69	-0.6
1,350,924	-		GFF1322	0.69	-1.0
1,350,926	-		GFF1322	0.70	-0.7
1,350,933	+		GFF1322	0.71	+0.0
1,350,933	+		GFF1322	0.71	+0.2
1,350,941	-		GFF1322	0.74	+1.2
1,350,941	-		GFF1322	0.74	+0.7
1,350,941	-		GFF1322	0.74	-0.2
1,350,945	+		GFF1322	0.75	+0.1
1,350,945	+		GFF1322	0.75	-0.3
1,350,950	+		GFF1322	0.76	+0.5
1,350,953	-		GFF1322	0.77	-1.3
1,350,953	-		GFF1322	0.77	-0.2
1,350,958	-		GFF1322	0.78	+1.5
1,350,958	-		GFF1322	0.78	-1.0
1,350,963	-		GFF1322	0.79	-0.4
1,350,966	+		GFF1322	0.80	+1.0
1,350,987	+		GFF1322	0.86	-0.0
1,350,987	+		GFF1322	0.86	-2.3
1,350,987	+		GFF1322	0.86	-0.9
1,350,987	+		GFF1322	0.86	+0.7
1,350,987	+		GFF1322	0.86	-1.1
1,350,987	+		GFF1322	0.86	-1.6
1,350,987	+		GFF1322	0.86	+0.1
1,350,987	+		GFF1322	0.86	-0.5
1,350,990	-		GFF1322	0.87	+0.2
1,350,990	-		GFF1322	0.87	+0.9
1,350,992	+		GFF1322	0.87	-0.7
1,350,992	+		GFF1322	0.87	-0.5
1,350,992	+		GFF1322	0.87	+0.4
1,350,992	+		GFF1322	0.87	+0.9
1,350,995	-		GFF1322	0.88	+0.6
1,350,995	-		GFF1322	0.88	-0.6
1,350,995	-		GFF1322	0.88	+0.3
1,350,995	-		GFF1322	0.88	+0.6
1,350,995	-		GFF1322	0.88	-0.3
1,350,995	-		GFF1322	0.88	+1.1
1,350,995	-		GFF1322	0.88	+0.6
1,351,000	-		GFF1322	0.89	-0.1
1,351,000	-		GFF1322	0.89	+0.1
1,351,000	-		GFF1322	0.89	+1.0
1,351,000	-		GFF1322	0.89	+0.1
1,351,000	-		GFF1322	0.89	+0.5
1,351,005	-				-1.4
1,351,005	-				-0.1
1,351,005	-				-0.4
1,351,005	-				-1.1
1,351,016	+				+0.7
1,351,016	+				-1.3
1,351,016	+				+1.5
1,351,016	+				-1.6
1,351,016	+				+0.7
1,351,016	+				-1.2
1,351,016	+				+0.4
1,351,016	+				+0.3
1,351,023	-				-0.1
1,351,024	-				-0.0
1,351,076	+				-0.5
1,351,081	+				+1.4
1,351,081	+				+0.7
1,351,086	+				+0.8
1,351,096	+				+0.6
1,351,096	+				-0.1
1,351,104	-				-2.1
1,351,107	+				-0.5
1,351,107	+				+0.2
1,351,107	+				-1.1
1,351,107	+				+0.1
1,351,107	+				+0.4
1,351,107	+				-0.6
1,351,107	+				-0.4
1,351,107	+				-0.4
1,351,107	+				-0.1
1,351,107	+				+0.1
1,351,115	-				+0.4
1,351,115	-				-1.3
1,351,115	-				-1.9
1,351,115	-				-0.2
1,351,115	-				+0.9
1,351,115	-				-1.9
1,351,115	-				+0.2
1,351,119	+				+0.0
1,351,157	+				-0.4
1,351,157	+				+0.4
1,351,164	+				-0.3
1,351,165	-				+1.9
1,351,172	+				-0.1
1,351,190	-				-1.1
1,351,190	-				+0.2
1,351,190	-				-0.2
1,351,190	-				+0.8
1,351,202	+				-1.3
1,351,210	+		GFF1323	0.10	-0.8
1,351,210	-		GFF1323	0.10	-1.4
1,351,223	+		GFF1323	0.12	+1.9
1,351,245	+		GFF1323	0.14	-0.9
1,351,245	+		GFF1323	0.14	+0.1
1,351,248	-		GFF1323	0.14	+0.3
1,351,248	-		GFF1323	0.14	-0.3
1,351,253	+		GFF1323	0.15	-2.2
1,351,253	+		GFF1323	0.15	-0.4
1,351,253	+		GFF1323	0.15	-1.1
1,351,253	-		GFF1323	0.15	-0.4
1,351,278	+		GFF1323	0.18	-1.8
1,351,278	+		GFF1323	0.18	+0.7
1,351,278	+		GFF1323	0.18	-1.4
1,351,286	-		GFF1323	0.18	-0.3
1,351,286	-		GFF1323	0.18	-1.5
1,351,286	-		GFF1323	0.18	+0.3
1,351,294	+		GFF1323	0.19	+0.3
1,351,294	+		GFF1323	0.19	+0.3
1,351,294	+		GFF1323	0.19	+0.1
1,351,319	-		GFF1323	0.22	+1.4
1,351,337	+		GFF1323	0.24	-0.4
1,351,337	+		GFF1323	0.24	+1.1
1,351,345	-		GFF1323	0.25	+0.6
1,351,345	-		GFF1323	0.25	+1.1
1,351,348	-		GFF1323	0.25	-1.2
1,351,356	+		GFF1323	0.26	+0.9
1,351,369	+		GFF1323	0.27	+0.1
1,351,377	-		GFF1323	0.28	+0.1
1,351,393	-		GFF1323	0.30	+0.8
1,351,424	+		GFF1323	0.33	+0.7
1,351,433	-		GFF1323	0.34	-0.0
1,351,438	-		GFF1323	0.34	+0.3
1,351,441	-		GFF1323	0.35	-1.3
1,351,459	+		GFF1323	0.36	-1.4
1,351,459	+		GFF1323	0.36	-0.6
1,351,500	+		GFF1323	0.41	-0.5
1,351,508	-		GFF1323	0.42	-1.5
1,351,512	+		GFF1323	0.42	-0.1
1,351,512	+		GFF1323	0.42	+0.7
1,351,512	+		GFF1323	0.42	-0.1
1,351,515	-		GFF1323	0.42	-0.7
1,351,520	-		GFF1323	0.43	+1.0
1,351,526	+		GFF1323	0.43	+0.7
1,351,534	+		GFF1323	0.44	-0.1
1,351,534	+		GFF1323	0.44	+0.4
1,351,534	-		GFF1323	0.44	-1.9
1,351,534	-		GFF1323	0.44	+0.2
1,351,534	-		GFF1323	0.44	-0.1
1,351,535	-		GFF1323	0.44	+0.9
1,351,536	+		GFF1323	0.45	-1.3
1,351,544	+		GFF1323	0.45	+0.6
1,351,547	-		GFF1323	0.46	+0.3
1,351,549	+		GFF1323	0.46	-1.1
1,351,549	+		GFF1323	0.46	-0.9
1,351,549	+		GFF1323	0.46	-0.6
1,351,549	+		GFF1323	0.46	-0.8
1,351,549	+		GFF1323	0.46	-1.5
1,351,549	+		GFF1323	0.46	+0.7
1,351,549	+		GFF1323	0.46	+0.6
1,351,549	+		GFF1323	0.46	+0.3
1,351,552	-		GFF1323	0.46	+0.8
1,351,554	+		GFF1323	0.46	+0.1
1,351,556	+		GFF1323	0.47	-0.2
1,351,557	-		GFF1323	0.47	-0.0
1,351,557	-		GFF1323	0.47	+1.5
1,351,557	-		GFF1323	0.47	+0.7
1,351,557	-		GFF1323	0.47	+0.3
1,351,557	-		GFF1323	0.47	-0.4
1,351,562	-		GFF1323	0.47	-0.6
1,351,564	-		GFF1323	0.47	-0.7
1,351,582	+		GFF1323	0.49	+0.2
1,351,582	+		GFF1323	0.49	-0.6
1,351,582	+		GFF1323	0.49	+0.4
1,351,582	+		GFF1323	0.49	+0.8
1,351,590	-		GFF1323	0.50	-0.4
1,351,590	-		GFF1323	0.50	-0.7
1,351,590	-		GFF1323	0.50	-0.0
1,351,590	-		GFF1323	0.50	-1.3
1,351,620	+		GFF1323	0.53	-0.9
1,351,628	-		GFF1323	0.54	+0.5
1,351,628	-		GFF1323	0.54	+0.6
1,351,628	-		GFF1323	0.54	-1.2
1,351,671	-		GFF1323	0.59	-1.5
1,351,703	+		GFF1323	0.62	-0.1
1,351,703	+		GFF1323	0.62	-2.3
1,351,717	-		GFF1323	0.63	+0.2
1,351,726	+		GFF1323	0.64	+0.3
1,351,734	-		GFF1323	0.65	-1.4
1,351,734	-		GFF1323	0.65	-1.3
1,351,734	-		GFF1323	0.65	-0.1
1,351,736	+		GFF1323	0.65	-0.5
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1,352,198	-				+0.4
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1,352,450	+		GFF1324	0.44	+1.9
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1,352,458	-		GFF1324	0.45	-1.6
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1,352,474	+		GFF1324	0.48	-3.0
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1,352,563	+		GFF1324	0.62	-1.3
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1,352,614	-		GFF1324	0.70	-0.6
1,352,614	-		GFF1324	0.70	-1.9
1,352,653	+		GFF1324	0.77	-0.8
1,352,658	+		GFF1324	0.77	+1.1
1,352,658	+		GFF1324	0.77	+0.1
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1,352,699	+		GFF1324	0.84	-0.4
1,352,725	+		GFF1324	0.88	-1.2
1,352,742	-				-2.2
1,352,743	+				+0.2
1,352,744	+				-0.5
1,352,752	+				-1.1
1,352,752	+				-0.5
1,352,752	+				+0.9
1,352,760	-				+0.4
1,352,803	-				-0.9
1,352,817	-				+0.9
1,352,819	+				+0.2
1,352,820	-				+0.6
1,352,826	+				+0.7
1,352,826	+				-0.2
1,352,834	+				-2.5
1,352,834	+				-0.5
1,352,834	+				+0.9
1,352,834	-				-0.9
1,352,842	-				-0.9
1,352,844	+				-1.3
1,352,844	-				+0.9
1,352,844	-				+0.5
1,352,844	-				-1.1
1,352,854	+				+0.4
1,352,855	+				-1.2
1,352,893	+				+0.2
1,352,899	+				-0.6
1,352,902	-				-1.3
1,352,914	-				-0.1
1,352,934	-		GFF1325	0.18	-1.9
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1,352,946	+		GFF1325	0.23	+0.1
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