Strain Fitness in Sphingobium sp. HT1-2 around GFF127

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
120,672	-		GFF125	0.69	+0.8
120,741	+		GFF125	0.72	-1.0
120,777	+		GFF125	0.74	-0.2
120,777	+		GFF125	0.74	-1.2
120,798	-		GFF125	0.75	+0.9
120,798	-		GFF125	0.75	+2.0
120,799	+		GFF125	0.75	-1.8
120,799	+		GFF125	0.75	-0.5
120,799	+		GFF125	0.75	+1.4
120,800	-		GFF125	0.75	+2.2
120,807	-		GFF125	0.75	+0.2
120,807	-		GFF125	0.75	+0.9
120,813	+		GFF125	0.75	+0.7
120,814	+		GFF125	0.75	-0.8
120,814	+		GFF125	0.75	-1.8
120,814	+		GFF125	0.75	+0.8
120,822	-		GFF125	0.76	-0.5
120,857	-		GFF125	0.77	+2.1
120,867	+		GFF125	0.77	+1.4
120,879	+		GFF125	0.78	+0.4
120,884	+		GFF125	0.78	+0.5
120,884	+		GFF125	0.78	-0.4
120,884	+		GFF125	0.78	-0.5
120,892	-		GFF125	0.78	-0.4
120,894	+		GFF125	0.79	-1.0
120,894	+		GFF125	0.79	+0.0
120,902	+		GFF125	0.79	+0.1
120,911	+		GFF125	0.79	-0.6
120,911	+		GFF125	0.79	-1.8
120,914	-		GFF125	0.79	-2.7
120,914	-		GFF125	0.79	+0.7
120,933	+		GFF125	0.80	+0.1
120,954	+		GFF125	0.81	+0.6
120,972	+		GFF125	0.82	-0.2
120,972	+		GFF125	0.82	+0.5
120,972	+		GFF125	0.82	+1.6
120,980	-		GFF125	0.82	+0.2
120,981	+		GFF125	0.82	-0.2
120,990	-		GFF125	0.82	+0.2
120,995	-		GFF125	0.83	-2.0
120,995	-		GFF125	0.83	-1.1
121,034	+		GFF125	0.84	+0.2
121,039	+		GFF125	0.84	+1.3
121,039	+		GFF125	0.84	-2.7
121,039	-		GFF125	0.84	-0.1
121,042	-		GFF125	0.85	-1.4
121,046	+		GFF125	0.85	+2.4
121,046	+		GFF125	0.85	+0.7
121,054	-		GFF125	0.85	-1.0
121,054	-		GFF125	0.85	+0.6
121,161	+		GFF125	0.89	-0.8
121,216	-				+0.2
121,243	+				-1.9
121,243	+				+0.3
121,243	+				-1.2
121,251	-				+0.5
121,251	-				-1.0
121,251	-				-0.6
121,317	-				-1.8
121,381	+				-0.2
121,381	+				-1.0
121,389	-				+1.4
121,433	-				-0.1
121,449	+				+0.1
121,494	-		GFF126	0.43	-1.8
121,557	-				-0.0
121,708	-				-1.2
121,747	+				-0.4
121,747	+				-1.0
121,754	+				-0.8
121,754	+				-0.5
121,754	+				+0.3
121,755	-				-1.2
121,755	-				+0.1
121,762	-				+0.9
121,762	-				-2.0
121,762	-				-1.0
121,762	-				+0.2
121,762	-				+0.0
121,762	-				+0.7
121,762	-				-0.6
121,767	-				-0.6
121,772	-				-0.4
121,824	-		GFF127	0.11	-2.8
121,865	+		GFF127	0.14	-0.3
121,865	+		GFF127	0.14	-0.9
121,865	+		GFF127	0.14	-0.5
121,865	+		GFF127	0.14	+1.7
121,865	+		GFF127	0.14	-0.7
121,865	+		GFF127	0.14	+0.6
121,865	+		GFF127	0.14	+0.8
121,865	+		GFF127	0.14	-0.2
121,865	+		GFF127	0.14	-0.3
121,865	+		GFF127	0.14	+3.0
121,870	+		GFF127	0.14	-0.5
121,873	-		GFF127	0.15	-1.9
121,873	-		GFF127	0.15	-0.8
121,873	-		GFF127	0.15	-0.7
121,873	-		GFF127	0.15	-1.1
121,893	+		GFF127	0.16	+0.0
121,913	+		GFF127	0.17	-0.6
121,919	+		GFF127	0.18	+0.1
121,922	-		GFF127	0.18	-0.3
121,948	-		GFF127	0.20	-2.2
121,961	+		GFF127	0.21	+0.6
122,006	-		GFF127	0.24	+0.4
122,015	+		GFF127	0.25	+0.4
122,072	-		GFF127	0.29	-1.2
122,105	+		GFF127	0.31	+0.1
122,131	+		GFF127	0.33	-1.1
122,131	+		GFF127	0.33	-0.4
122,139	-		GFF127	0.33	-1.2
122,139	-		GFF127	0.33	+0.2
122,160	+		GFF127	0.35	+0.7
122,163	-		GFF127	0.35	+1.1
122,163	-		GFF127	0.35	+0.9
122,168	-		GFF127	0.35	+0.5
122,178	-		GFF127	0.36	-1.0
122,178	-		GFF127	0.36	+0.2
122,190	-		GFF127	0.37	+1.0
122,198	-		GFF127	0.38	-0.1
122,198	-		GFF127	0.38	-0.8
122,222	+		GFF127	0.39	-0.9
122,241	-		GFF127	0.41	-0.4
122,247	+		GFF127	0.41	+0.3
122,253	+		GFF127	0.41	-1.4
122,255	+		GFF127	0.42	+1.1
122,255	+		GFF127	0.42	-2.3
122,255	+		GFF127	0.42	+0.8
122,295	-		GFF127	0.44	-0.1
122,310	+		GFF127	0.45	+0.8
122,313	-		GFF127	0.46	+0.2
122,328	-		GFF127	0.47	+0.4
122,331	+		GFF127	0.47	-0.7
122,331	+		GFF127	0.47	+2.7
122,334	-		GFF127	0.47	-0.1
122,364	-		GFF127	0.49	-1.6
122,373	-		GFF127	0.50	-0.9
122,380	+		GFF127	0.50	+0.8
122,495	+		GFF127	0.58	-2.4
122,523	+		GFF127	0.60	-1.5
122,543	+		GFF127	0.62	-0.6
122,560	+		GFF127	0.63	+0.4
122,567	+		GFF127	0.64	+0.5
122,568	-		GFF127	0.64	-2.3
122,568	-		GFF127	0.64	+1.9
122,568	-		GFF127	0.64	-0.9
122,574	+		GFF127	0.64	-1.0
122,575	-		GFF127	0.64	-1.2
122,575	-		GFF127	0.64	+1.2
122,582	-		GFF127	0.65	-0.9
122,587	-		GFF127	0.65	+0.1
122,594	+		GFF127	0.65	-0.9
122,623	+		GFF127	0.68	-0.2
122,631	-		GFF127	0.68	-0.5
122,631	-		GFF127	0.68	+0.2
122,631	-		GFF127	0.68	-0.5
122,641	+		GFF127	0.69	-0.5
122,646	+		GFF127	0.69	-0.9
122,646	+		GFF127	0.69	+2.1
122,646	+		GFF127	0.69	-1.4
122,649	-		GFF127	0.69	-0.9
122,660	+		GFF127	0.70	-0.3
122,668	-		GFF127	0.71	-1.0
122,668	-		GFF127	0.71	-1.8
122,668	-		GFF127	0.71	-1.5
122,668	-		GFF127	0.71	+0.4
122,668	-		GFF127	0.71	-0.1
122,676	-		GFF127	0.71	-1.3
122,710	+		GFF127	0.74	-1.8
122,723	+		GFF127	0.75	-1.0
122,723	+		GFF127	0.75	-0.5
122,730	+		GFF127	0.75	-0.0
122,731	-		GFF127	0.75	-0.8
122,738	-		GFF127	0.76	+0.2
122,806	+		GFF127	0.80	-0.2
122,811	+		GFF127	0.81	+0.4
122,819	-		GFF127	0.81	+0.4
122,821	+		GFF127	0.81	+1.2
122,826	+		GFF127	0.82	+1.0
122,826	+		GFF127	0.82	-0.8
122,826	+		GFF127	0.82	+1.2
122,826	+		GFF127	0.82	-1.5
122,826	+		GFF127	0.82	+0.8
122,830	+		GFF127	0.82	+0.4
122,831	+		GFF127	0.82	-1.0
122,831	+		GFF127	0.82	+0.1
122,831	+		GFF127	0.82	-1.6
122,834	-		GFF127	0.82	+0.7
122,834	-		GFF127	0.82	-0.0
122,834	-		GFF127	0.82	-1.7
122,834	-		GFF127	0.82	-0.1
122,836	+		GFF127	0.83	+1.0
122,836	+		GFF127	0.83	-0.3
122,836	+		GFF127	0.83	-0.9
122,836	+		GFF127	0.83	-0.6
122,836	+		GFF127	0.83	-0.1
122,839	-		GFF127	0.83	+0.6
122,839	-		GFF127	0.83	+1.7
122,839	-		GFF127	0.83	+1.2
122,844	-		GFF127	0.83	-1.4
122,844	-		GFF127	0.83	+1.3
122,844	-		GFF127	0.83	+0.9
122,844	-		GFF127	0.83	-1.6
122,844	-		GFF127	0.83	-0.7
122,844	-		GFF127	0.83	-0.2
122,844	-		GFF127	0.83	+0.3
122,863	+		GFF127	0.84	+0.2
122,871	-		GFF127	0.85	-0.6
122,887	-		GFF127	0.86	-1.5
122,896	-		GFF127	0.87	+0.3
122,915	-		GFF127	0.88	+0.2
122,922	+		GFF127	0.89	-1.1
122,922	+		GFF127	0.89	-0.8
122,922	+		GFF127	0.89	+0.5
122,922	+		GFF127	0.89	-1.3
122,922	+		GFF127	0.89	+0.5
122,922	+		GFF127	0.89	-0.0
122,922	+		GFF127	0.89	-0.5
122,922	+		GFF127	0.89	-0.2
122,930	-		GFF127	0.89	-0.1
122,930	-		GFF127	0.89	-1.4
122,930	-		GFF127	0.89	+0.1
122,930	-		GFF127	0.89	+1.0
122,930	-		GFF127	0.89	-2.3
122,930	-		GFF127	0.89	+0.2
122,930	-		GFF127	0.89	-0.8
122,930	-		GFF127	0.89	+1.9
122,930	-		GFF127	0.89	-1.5
122,930	-		GFF127	0.89	+0.6
122,930	-		GFF127	0.89	-0.2
122,930	-		GFF127	0.89	-0.2
122,930	-		GFF127	0.89	-0.7
122,930	-		GFF127	0.89	-0.0
122,930	-		GFF127	0.89	+1.6
122,930	-		GFF127	0.89	-0.3
122,930	-		GFF127	0.89	-1.4
122,930	-		GFF127	0.89	+0.4
122,930	-		GFF127	0.89	+0.9
122,930	-		GFF127	0.89	-0.5
122,983	-				+0.5
122,983	-				+0.9
122,990	-				-0.4
122,990	-				-0.9
123,014	+				+0.2
123,046	+				-0.9
123,046	+				+0.7
123,079	+				-0.3
123,079	+				-0.3
123,087	-				-0.8
123,087	-				-0.1
123,093	-				+0.1
123,157	+		GFF128	0.61	-0.2
123,164	-		GFF128	0.67	-0.4
123,167	+		GFF128	0.69	+0.5
123,167	+		GFF128	0.69	-0.8
123,170	-		GFF128	0.72	-0.6
123,175	-		GFF128	0.76	-0.3
123,188	+		GFF128	0.88	+0.2
123,188	+		GFF128	0.88	-0.2
123,196	-				-1.5
123,196	-				+0.3
123,248	-				+1.8
123,249	+				+0.4
123,286	+				-1.8
123,286	+				+1.7
123,294	-				-0.9
123,312	+				-0.6
123,319	+				+0.4
123,341	+				-0.5
123,363	+				+0.1
123,368	+				+0.2
123,368	+				+1.3
123,376	+				-0.1
123,376	+				-2.0
123,443	+		GFF129	0.14	+1.3
123,445	+		GFF129	0.14	+0.1
123,451	-		GFF129	0.15	+1.3
123,458	+		GFF129	0.15	+0.7
123,501	+		GFF129	0.18	+0.7
123,501	+		GFF129	0.18	+0.4
123,501	+		GFF129	0.18	-0.8
123,509	-		GFF129	0.19	-2.3
123,534	-		GFF129	0.20	-0.6
123,558	+		GFF129	0.22	+0.7
123,559	+		GFF129	0.22	+0.8
123,559	+		GFF129	0.22	-0.7
123,580	-		GFF129	0.23	+1.4
123,594	+		GFF129	0.24	-1.3
123,609	+		GFF129	0.25	-1.0
123,611	-		GFF129	0.25	-0.8
123,634	+		GFF129	0.27	+0.4
123,643	-		GFF129	0.27	+0.1
123,662	+		GFF129	0.29	+0.4
123,705	+		GFF129	0.31	+0.6
123,705	+		GFF129	0.31	+0.6
123,724	-		GFF129	0.33	-0.2
123,783	+		GFF129	0.37	+0.2
123,809	+		GFF129	0.38	-0.5
123,809	+		GFF129	0.38	+0.4
123,809	+		GFF129	0.38	+0.9
123,817	-		GFF129	0.39	+0.0
123,817	-		GFF129	0.39	-0.3
123,817	-		GFF129	0.39	+0.5
123,819	+		GFF129	0.39	-0.1
123,819	+		GFF129	0.39	-0.7
123,827	-		GFF129	0.39	-0.4
123,827	-		GFF129	0.39	+0.1
123,827	-		GFF129	0.39	+0.2
123,856	+		GFF129	0.41	-0.6
123,856	+		GFF129	0.41	+0.9
123,864	-		GFF129	0.42	-1.4
123,887	+		GFF129	0.43	+0.2
123,920	+		GFF129	0.45	+0.3
123,996	+		GFF129	0.50	+0.4
123,996	+		GFF129	0.50	-0.3
124,001	+		GFF129	0.51	+0.1
124,008	+		GFF129	0.51	-1.8
124,009	-		GFF129	0.51	+0.4
124,009	-		GFF129	0.51	+0.0
124,010	+		GFF129	0.51	-0.0
124,017	-		GFF129	0.52	+0.0
124,029	-		GFF129	0.53	-0.8
124,039	-		GFF129	0.53	-1.8
124,052	-		GFF129	0.54	-0.3
124,052	-		GFF129	0.54	+1.2
124,055	+		GFF129	0.54	+0.5
124,063	-		GFF129	0.55	+0.1
124,063	-		GFF129	0.55	+0.1
124,065	+		GFF129	0.55	+0.7
124,073	-		GFF129	0.55	-0.5
124,076	+		GFF129	0.56	-0.7