Strain Fitness in Sphingobium sp. HT1-2 around GFF1212

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,231,815	+		GFF1211	0.18	+0.7
1,231,821	-		GFF1211	0.18	+0.8
1,231,823	-		GFF1211	0.18	-2.4
1,231,854	-		GFF1211	0.21	+0.1
1,231,873	+		GFF1211	0.22	+1.0
1,231,942	+		GFF1211	0.28	+1.4
1,231,950	-		GFF1211	0.29	-2.7
1,231,957	+		GFF1211	0.29	+0.3
1,231,961	+		GFF1211	0.30	-0.3
1,231,988	-		GFF1211	0.32	-0.7
1,232,019	-		GFF1211	0.35	-0.1
1,232,102	-		GFF1211	0.41	+0.6
1,232,122	+		GFF1211	0.43	+0.1
1,232,151	-		GFF1211	0.46	+0.7
1,232,205	+		GFF1211	0.50	+1.3
1,232,205	+		GFF1211	0.50	+1.3
1,232,205	+		GFF1211	0.50	+0.0
1,232,276	+		GFF1211	0.56	+0.0
1,232,276	+		GFF1211	0.56	+1.3
1,232,279	-		GFF1211	0.56	-0.3
1,232,287	-		GFF1211	0.57	-1.6
1,232,304	-		GFF1211	0.58	+0.5
1,232,315	+		GFF1211	0.59	+0.7
1,232,328	-		GFF1211	0.60	+0.8
1,232,330	+		GFF1211	0.60	+0.6
1,232,331	-		GFF1211	0.60	-0.0
1,232,338	-		GFF1211	0.61	+0.7
1,232,378	+		GFF1211	0.64	+1.4
1,232,421	+		GFF1211	0.68	-0.2
1,232,442	+		GFF1211	0.70	+0.6
1,232,450	-		GFF1211	0.70	-0.9
1,232,505	+		GFF1211	0.75	-1.0
1,232,505	+		GFF1211	0.75	+2.0
1,232,546	+		GFF1211	0.78	+1.5
1,232,552	+		GFF1211	0.79	-0.6
1,232,552	+		GFF1211	0.79	+1.6
1,232,572	+		GFF1211	0.80	+0.8
1,232,604	+		GFF1211	0.83	+0.6
1,232,604	+		GFF1211	0.83	+0.8
1,232,604	+		GFF1211	0.83	+0.9
1,232,604	+		GFF1211	0.83	+0.3
1,232,604	+		GFF1211	0.83	-0.3
1,232,604	+		GFF1211	0.83	+0.5
1,232,604	+		GFF1211	0.83	+1.7
1,232,610	-		GFF1211	0.84	-0.2
1,232,612	-		GFF1211	0.84	+0.0
1,232,616	-		GFF1211	0.84	+0.1
1,232,669	+		GFF1211	0.88	+0.5
1,232,677	-		GFF1211	0.89	+0.4
1,232,700	-				-0.3
1,232,709	+				+0.4
1,232,709	+				-0.2
1,232,751	-				+0.3
1,232,753	+				-2.1
1,232,766	+				+1.0
1,232,766	+				-0.2
1,232,774	-				-0.1
1,232,775	-				-0.8
1,232,775	-				+0.1
1,232,786	-				-1.7
1,232,789	+				+0.2
1,232,789	+				-0.1
1,232,789	+				-0.6
1,232,789	+				+1.1
1,232,789	+				+1.4
1,232,789	+				+0.9
1,232,789	+				+0.5
1,232,789	+				+0.3
1,232,797	-				+1.0
1,232,797	-				-1.0
1,232,797	-				-1.5
1,232,797	-				-2.1
1,232,797	-				-0.8
1,232,811	+				+1.0
1,232,819	-				-0.6
1,232,819	-				-0.4
1,232,947	+				+1.7
1,232,955	-				+0.7
1,232,957	+		GFF1212	0.10	-0.8
1,232,964	-		GFF1212	0.10	-1.5
1,233,008	+		GFF1212	0.13	+0.8
1,233,008	+		GFF1212	0.13	+0.6
1,233,019	+		GFF1212	0.14	-1.6
1,233,039	-		GFF1212	0.15	+0.3
1,233,039	-		GFF1212	0.15	-0.4
1,233,041	+		GFF1212	0.15	+0.1
1,233,044	-		GFF1212	0.16	+1.1
1,233,046	+		GFF1212	0.16	+0.9
1,233,046	+		GFF1212	0.16	+1.1
1,233,049	-		GFF1212	0.16	+0.5
1,233,066	+		GFF1212	0.17	-0.1
1,233,075	+		GFF1212	0.18	+0.6
1,233,075	+		GFF1212	0.18	-0.6
1,233,075	+		GFF1212	0.18	-0.2
1,233,083	-		GFF1212	0.18	+0.5
1,233,083	-		GFF1212	0.18	-1.0
1,233,120	+		GFF1212	0.21	-0.3
1,233,124	+		GFF1212	0.21	+0.3
1,233,125	+		GFF1212	0.21	-0.4
1,233,128	-		GFF1212	0.21	+0.7
1,233,128	-		GFF1212	0.21	-0.8
1,233,128	-		GFF1212	0.21	+1.1
1,233,128	-		GFF1212	0.21	+1.0
1,233,128	-		GFF1212	0.21	-0.1
1,233,128	-		GFF1212	0.21	+1.8
1,233,132	-		GFF1212	0.21	-0.5
1,233,132	-		GFF1212	0.21	-0.5
1,233,156	+		GFF1212	0.23	-0.5
1,233,164	-		GFF1212	0.24	-1.3
1,233,164	-		GFF1212	0.24	+0.0
1,233,164	-		GFF1212	0.24	+0.2
1,233,164	-		GFF1212	0.24	-0.5
1,233,166	+		GFF1212	0.24	-0.5
1,233,174	-		GFF1212	0.24	+0.6
1,233,174	-		GFF1212	0.24	-0.7
1,233,189	-		GFF1212	0.25	+0.6
1,233,217	-		GFF1212	0.27	+0.0
1,233,295	+		GFF1212	0.32	+1.3
1,233,323	+		GFF1212	0.34	-0.5
1,233,323	+		GFF1212	0.34	+0.2
1,233,323	+		GFF1212	0.34	-0.5
1,233,347	+		GFF1212	0.35	+1.0
1,233,347	-		GFF1212	0.35	+0.4
1,233,355	+		GFF1212	0.36	-0.8
1,233,355	+		GFF1212	0.36	-0.3
1,233,366	+		GFF1212	0.37	+1.0
1,233,372	+		GFF1212	0.37	-1.6
1,233,372	+		GFF1212	0.37	+1.7
1,233,382	+		GFF1212	0.38	-0.7
1,233,382	+		GFF1212	0.38	+0.8
1,233,382	+		GFF1212	0.38	+0.5
1,233,382	+		GFF1212	0.38	-1.1
1,233,382	+		GFF1212	0.38	+0.2
1,233,382	+		GFF1212	0.38	+0.0
1,233,390	-		GFF1212	0.38	+0.7
1,233,390	-		GFF1212	0.38	-2.3
1,233,390	-		GFF1212	0.38	-0.0
1,233,408	+		GFF1212	0.39	+0.8
1,233,418	+		GFF1212	0.40	+0.8
1,233,445	+		GFF1212	0.42	+0.6
1,233,445	+		GFF1212	0.42	+1.4
1,233,449	-		GFF1212	0.42	-1.0
1,233,453	-		GFF1212	0.42	+1.0
1,233,460	+		GFF1212	0.43	+0.4
1,233,460	+		GFF1212	0.43	-0.3
1,233,468	-		GFF1212	0.43	+0.9
1,233,468	-		GFF1212	0.43	+0.7
1,233,468	-		GFF1212	0.43	-0.5
1,233,480	-		GFF1212	0.44	+2.7
1,233,494	+		GFF1212	0.45	-0.2
1,233,502	-		GFF1212	0.46	-2.7
1,233,520	+		GFF1212	0.47	-1.0
1,233,520	+		GFF1212	0.47	+1.7
1,233,522	+		GFF1212	0.47	-1.7
1,233,522	+		GFF1212	0.47	-0.1
1,233,528	-		GFF1212	0.47	-1.8
1,233,528	-		GFF1212	0.47	+1.2
1,233,530	+		GFF1212	0.47	-0.4
1,233,530	+		GFF1212	0.47	-0.3
1,233,538	-		GFF1212	0.48	+1.2
1,233,538	-		GFF1212	0.48	-0.8
1,233,548	-		GFF1212	0.49	-0.2
1,233,548	-		GFF1212	0.49	-1.0
1,233,550	+		GFF1212	0.49	-0.5
1,233,558	-		GFF1212	0.49	+1.8
1,233,558	-		GFF1212	0.49	+0.3
1,233,584	-		GFF1212	0.51	+0.4
1,233,664	+		GFF1212	0.56	+0.5
1,233,672	-		GFF1212	0.57	+0.5
1,233,680	-		GFF1212	0.57	-0.4
1,233,721	+		GFF1212	0.60	-0.8
1,233,823	-		GFF1212	0.67	+0.8
1,233,893	-		GFF1212	0.71	+0.8
1,233,909	+		GFF1212	0.72	-0.8
1,233,942	-		GFF1212	0.74	-1.1
1,233,958	+		GFF1212	0.75	+0.8
1,234,019	-		GFF1212	0.79	-1.7
1,234,054	+		GFF1212	0.82	-0.3
1,234,054	-		GFF1212	0.82	-0.4
1,234,062	-		GFF1212	0.82	+1.0
1,234,084	+		GFF1212	0.84	-0.1
1,234,114	+		GFF1212	0.86	-0.5
1,234,129	+		GFF1212	0.87	-1.8
1,234,139	+		GFF1212	0.87	+1.3
1,234,144	+		GFF1212	0.88	-0.4
1,234,171	-		GFF1212	0.89	+0.1
1,234,181	+				-0.5
1,234,183	+				-2.8
1,234,193	+				+0.7
1,234,193	+				+0.5
1,234,215	-				-0.2
1,234,225	-				-1.0
1,234,225	-				-1.6
1,234,225	-				+0.8
1,234,225	-				+0.7
1,234,228	-				-2.1
1,234,302	-				-0.0
1,234,315	-				+0.9
1,234,315	-				+0.4
1,234,315	-				-0.7
1,234,315	-				-0.0
1,234,330	+				-1.3
1,234,356	+				-0.9
1,234,356	+				+0.6
1,234,374	-				+0.1
1,234,379	+				-2.7
1,234,389	+				-0.5
1,234,431	+		GFF1213	0.12	-0.9
1,234,432	+		GFF1213	0.13	+0.6
1,234,439	-		GFF1213	0.13	-0.3
1,234,461	-		GFF1213	0.16	-1.3
1,234,468	+		GFF1213	0.17	+0.5
1,234,473	+		GFF1213	0.18	-0.8
1,234,473	+		GFF1213	0.18	-0.5
1,234,473	+		GFF1213	0.18	-0.2
1,234,473	+		GFF1213	0.18	-0.7
1,234,473	+		GFF1213	0.18	+0.9
1,234,476	-		GFF1213	0.18	+0.0
1,234,476	-		GFF1213	0.18	-1.6
1,234,481	-		GFF1213	0.19	+0.3
1,234,481	-		GFF1213	0.19	+0.1
1,234,481	-		GFF1213	0.19	+0.4
1,234,481	-		GFF1213	0.19	-0.9
1,234,481	-		GFF1213	0.19	+0.0
1,234,481	-		GFF1213	0.19	-0.9
1,234,481	-		GFF1213	0.19	+0.7
1,234,487	+		GFF1213	0.19	-1.3
1,234,532	+		GFF1213	0.25	-2.2
1,234,564	+		GFF1213	0.29	+1.2
1,234,565	-		GFF1213	0.29	-2.6
1,234,572	-		GFF1213	0.30	-0.3
1,234,572	-		GFF1213	0.30	-0.4
1,234,574	+		GFF1213	0.30	+0.4
1,234,574	+		GFF1213	0.30	+0.7
1,234,574	+		GFF1213	0.30	+1.6
1,234,574	+		GFF1213	0.30	+0.8
1,234,574	+		GFF1213	0.30	+1.8
1,234,582	-		GFF1213	0.31	+0.1
1,234,582	-		GFF1213	0.31	+0.7
1,234,584	+		GFF1213	0.31	-1.0
1,234,584	+		GFF1213	0.31	+0.7
1,234,589	+		GFF1213	0.32	-0.0
1,234,592	-		GFF1213	0.32	-0.1
1,234,592	-		GFF1213	0.32	-1.8
1,234,592	-		GFF1213	0.32	-2.4
1,234,592	-		GFF1213	0.32	-0.2
1,234,597	-		GFF1213	0.33	-0.9
1,234,599	-		GFF1213	0.33	-0.1
1,234,622	-		GFF1213	0.36	-0.9
1,234,622	-		GFF1213	0.36	-0.5
1,234,629	+		GFF1213	0.37	-0.6
1,234,637	-		GFF1213	0.38	+0.7
1,234,646	+		GFF1213	0.39	+0.3
1,234,686	+		GFF1213	0.44	-0.9
1,234,686	-		GFF1213	0.44	-0.6
1,234,693	-		GFF1213	0.45	-0.9
1,234,713	+		GFF1213	0.47	-0.5
1,234,727	-		GFF1213	0.49	-0.9
1,234,750	+		GFF1213	0.52	+0.8
1,234,781	+		GFF1213	0.55	+0.1
1,234,781	+		GFF1213	0.55	+0.4
1,234,789	-		GFF1213	0.56	-1.8
1,234,794	-		GFF1213	0.57	-0.7
1,234,800	-		GFF1213	0.58	-2.0
1,234,810	+		GFF1213	0.59	+1.1
1,234,826	-		GFF1213	0.61	+0.8
1,234,826	-		GFF1213	0.61	-0.0
1,234,861	-		GFF1213	0.65	-1.4
1,234,902	+		GFF1213	0.70	+0.5
1,234,949	+		GFF1213	0.76	-0.2
1,234,957	-		GFF1213	0.77	-0.8
1,234,958	+		GFF1213	0.77	-0.9
1,234,958	+		GFF1213	0.77	-1.9
1,235,039	-		GFF1213	0.87	-1.9
1,235,039	-		GFF1213	0.87	-1.6
1,235,060	+		GFF1213	0.90	-1.9
1,235,082	-				-0.6
1,235,082	-				-0.9
1,235,084	+				-1.6
1,235,091	-				+0.4
1,235,103	+				+0.8
1,235,109	+				+0.3
1,235,117	-				+1.4
1,235,145	-				+0.3
1,235,175	+				-0.4
1,235,192	+				-1.1
1,235,230	+				+1.4
1,235,242	+				+1.0