Strain Fitness in Sphingobium sp. HT1-2 around GFF121

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
113,816	+		GFF120	0.47	+0.4
113,825	-		GFF120	0.47	-1.1
113,854	-		GFF120	0.49	-0.9
113,889	+		GFF120	0.52	-0.2
113,894	+		GFF120	0.52	-1.6
113,894	+		GFF120	0.52	-1.5
113,894	+		GFF120	0.52	-1.2
113,896	+		GFF120	0.52	-0.7
113,897	-		GFF120	0.52	-1.2
113,902	-		GFF120	0.52	-2.3
113,902	-		GFF120	0.52	-0.6
113,902	-		GFF120	0.52	-1.3
113,902	-		GFF120	0.52	-1.3
113,904	-		GFF120	0.53	-1.3
113,924	-		GFF120	0.54	+0.3
113,932	-		GFF120	0.54	-2.2
113,955	-		GFF120	0.56	-0.3
114,049	+		GFF120	0.62	-0.8
114,069	+		GFF120	0.64	-1.2
114,079	-		GFF120	0.64	-0.6
114,080	-		GFF120	0.64	-1.5
114,082	-		GFF120	0.64	-2.3
114,087	-		GFF120	0.65	-1.3
114,087	-		GFF120	0.65	-1.7
114,090	-		GFF120	0.65	-0.6
114,133	+		GFF120	0.68	-0.3
114,165	+		GFF120	0.70	-0.6
114,184	+		GFF120	0.71	-2.2
114,202	-		GFF120	0.72	-1.8
114,202	-		GFF120	0.72	-0.0
114,203	+		GFF120	0.73	-0.6
114,211	-		GFF120	0.73	-1.8
114,228	+		GFF120	0.74	-0.3
114,236	-		GFF120	0.75	-1.5
114,275	+		GFF120	0.77	-0.5
114,288	-		GFF120	0.78	-0.9
114,308	-		GFF120	0.80	+0.1
114,313	-		GFF120	0.80	-1.5
114,321	-		GFF120	0.80	+0.1
114,330	+		GFF120	0.81	-1.2
114,347	+		GFF120	0.82	-1.3
114,347	+		GFF120	0.82	-0.3
114,347	+		GFF120	0.82	+0.9
114,347	+		GFF120	0.82	-1.6
114,347	+		GFF120	0.82	-0.5
114,347	+		GFF120	0.82	-0.3
114,355	-		GFF120	0.83	-1.4
114,355	-		GFF120	0.83	+0.6
114,363	+		GFF120	0.83	-0.6
114,365	-		GFF120	0.83	-2.1
114,383	-		GFF120	0.85	-1.2
114,391	-		GFF120	0.85	-1.1
114,394	+		GFF120	0.85	-0.2
114,412	+		GFF120	0.86	-1.8
114,419	+		GFF120	0.87	-0.9
114,419	+		GFF120	0.87	-0.8
114,426	-		GFF120	0.87	-1.2
114,427	-		GFF120	0.87	-2.6
114,467	+				+0.3
114,467	+				+0.1
114,485	-				-1.4
114,488	+				-1.3
114,495	-				-1.6
114,496	+				+0.1
114,504	-				-1.7
114,504	-				-1.7
114,506	+				-1.3
114,509	-				-1.5
114,511	+				-0.5
114,511	+				-1.2
114,511	+				-1.3
114,514	-				-0.9
114,519	-				-0.4
114,546	-				-0.0
114,590	+				-0.3
114,595	+				-2.2
114,598	-				-2.1
114,616	+				+0.6
114,629	+				+0.3
114,650	-				-0.8
114,653	+				-0.5
114,653	+				+0.5
114,655	+				-1.5
114,656	-				+0.5
114,660	+				+0.3
114,660	+				-0.1
114,660	+				+0.6
114,660	+				-1.2
114,660	+				-0.3
114,660	+				-0.9
114,668	+				+0.1
114,668	-				-1.6
114,668	-				+0.1
114,668	-				-2.5
114,668	-				-0.9
114,668	-				+0.6
114,673	-				-1.7
114,676	-				-0.5
114,694	+				+0.7
114,694	+				-0.4
114,698	+				-0.1
114,698	+				+0.5
114,698	+				-1.3
114,698	+				+0.4
114,698	+				+0.3
114,698	+				+0.4
114,698	+				-1.1
114,698	+				-0.9
114,698	+				-0.9
114,702	-				-0.7
114,706	-				+0.1
114,706	-				-0.4
114,706	-				-0.8
114,715	+				-1.1
114,715	+				-0.1
114,715	+				-0.6
114,721	-				-1.2
114,723	-				-0.7
114,723	-				-1.5
114,723	-				+0.4
114,723	-				+0.4
114,725	-				+0.0
114,731	-				-0.6
114,756	-				-0.8
114,777	-				+0.1
114,797	-				+0.6
114,855	-				+0.6
114,860	-				+0.6
114,860	-				+0.4
114,903	-				-0.6
114,903	-				-1.6
114,974	+		GFF121	0.12	-0.6
114,974	+		GFF121	0.12	-1.3
114,974	+		GFF121	0.12	-0.8
114,974	-		GFF121	0.12	+0.3
114,974	-		GFF121	0.12	+0.4
114,982	-		GFF121	0.13	+0.2
114,999	+		GFF121	0.14	-0.1
114,999	+		GFF121	0.14	+0.1
115,007	-		GFF121	0.14	-0.4
115,032	+		GFF121	0.16	-0.9
115,032	+		GFF121	0.16	+0.2
115,054	+		GFF121	0.18	+0.4
115,062	-		GFF121	0.18	+0.4
115,064	+		GFF121	0.19	-0.4
115,067	-		GFF121	0.19	+1.2
115,069	+		GFF121	0.19	-0.4
115,079	+		GFF121	0.20	-0.4
115,079	+		GFF121	0.20	+1.4
115,087	-		GFF121	0.20	+1.5
115,094	+		GFF121	0.21	-0.2
115,094	+		GFF121	0.21	+1.0
115,094	+		GFF121	0.21	+1.1
115,101	-		GFF121	0.21	+1.0
115,102	-		GFF121	0.21	-1.5
115,103	+		GFF121	0.22	-0.3
115,103	+		GFF121	0.22	-1.0
115,103	+		GFF121	0.22	+0.8
115,104	+		GFF121	0.22	-0.0
115,111	-		GFF121	0.22	+0.8
115,126	+		GFF121	0.23	+0.4
115,132	+		GFF121	0.24	-0.2
115,140	-		GFF121	0.24	-1.0
115,167	+		GFF121	0.26	-2.1
115,175	-		GFF121	0.27	+0.1
115,177	+		GFF121	0.27	-0.7
115,182	+		GFF121	0.27	-1.4
115,182	+		GFF121	0.27	+0.5
115,185	-		GFF121	0.28	-0.2
115,208	+		GFF121	0.29	-1.4
115,213	+		GFF121	0.30	+0.1
115,213	+		GFF121	0.30	+0.0
115,227	-		GFF121	0.31	+0.4
115,249	+		GFF121	0.32	-1.2
115,254	+		GFF121	0.33	-1.6
115,254	+		GFF121	0.33	-0.5
115,256	+		GFF121	0.33	-0.7
115,257	-		GFF121	0.33	-0.7
115,257	-		GFF121	0.33	+1.7
115,258	-		GFF121	0.33	+1.0
115,264	+		GFF121	0.33	-1.3
115,264	-		GFF121	0.33	+0.4
115,272	-		GFF121	0.34	+0.7
115,272	-		GFF121	0.34	-0.6
115,282	+		GFF121	0.35	+0.7
115,290	-		GFF121	0.35	+0.7
115,301	-		GFF121	0.36	+1.6
115,320	-		GFF121	0.38	-1.5
115,369	+		GFF121	0.41	+0.3
115,369	+		GFF121	0.41	-0.5
115,387	+		GFF121	0.43	-0.2
115,392	-		GFF121	0.43	-0.8
115,395	-		GFF121	0.43	+1.6
115,395	-		GFF121	0.43	+0.6
115,409	+		GFF121	0.44	-0.7
115,417	-		GFF121	0.45	-0.7
115,417	-		GFF121	0.45	-0.2
115,427	+		GFF121	0.46	-0.3
115,429	+		GFF121	0.46	-1.6
115,432	+		GFF121	0.46	+0.1
115,437	-		GFF121	0.46	-1.6
115,505	+		GFF121	0.51	-1.2
115,529	+		GFF121	0.53	+0.6
115,558	-		GFF121	0.55	-1.9
115,587	-		GFF121	0.57	+0.2
115,589	+		GFF121	0.58	-1.6
115,597	-		GFF121	0.58	-0.8
115,621	+		GFF121	0.60	+1.2
115,621	+		GFF121	0.60	-0.9
115,626	+		GFF121	0.60	+0.5
115,626	+		GFF121	0.60	-0.0
115,629	-		GFF121	0.61	+0.8
115,629	-		GFF121	0.61	-0.4
115,631	+		GFF121	0.61	-0.6
115,634	-		GFF121	0.61	+1.0
115,661	-		GFF121	0.63	+0.2
115,706	+		GFF121	0.66	+0.3
115,714	-		GFF121	0.67	+1.1
115,714	-		GFF121	0.67	+0.3
115,714	-		GFF121	0.67	-0.4
115,721	-		GFF121	0.67	+0.7
115,727	-		GFF121	0.68	+0.9
115,767	+		GFF121	0.71	-0.8
115,767	+		GFF121	0.71	+0.2
115,767	+		GFF121	0.71	-1.5
115,767	+		GFF121	0.71	-0.4
115,767	+		GFF121	0.71	+0.5
115,767	+		GFF121	0.71	-0.5
115,767	+		GFF121	0.71	+0.1
115,775	-		GFF121	0.71	-1.2
115,775	-		GFF121	0.71	+0.9
115,803	-		GFF121	0.73	+1.5
115,810	+		GFF121	0.74	-1.9
115,810	+		GFF121	0.74	+0.2
115,810	-		GFF121	0.74	-0.8
115,812	+		GFF121	0.74	-1.2
115,812	+		GFF121	0.74	+0.6
115,817	+		GFF121	0.75	+0.2
115,820	-		GFF121	0.75	+0.7
115,823	-		GFF121	0.75	-1.1
115,864	+		GFF121	0.78	-1.3
115,872	-		GFF121	0.79	-1.5
115,872	-		GFF121	0.79	-0.6
115,872	-		GFF121	0.79	+0.7
115,872	-		GFF121	0.79	+1.4
115,877	-		GFF121	0.79	+0.4
115,906	-		GFF121	0.81	-1.4
115,908	+		GFF121	0.81	-1.6
115,908	+		GFF121	0.81	-0.4
115,913	+		GFF121	0.82	+0.1
115,913	+		GFF121	0.82	-0.1
115,913	+		GFF121	0.82	+0.3
115,913	+		GFF121	0.82	-0.8
115,914	+		GFF121	0.82	+0.4
115,914	+		GFF121	0.82	-0.2
115,914	+		GFF121	0.82	+0.1
115,916	-		GFF121	0.82	-0.3
115,921	-		GFF121	0.82	-1.6
115,921	-		GFF121	0.82	+0.9
115,921	-		GFF121	0.82	-0.1
115,936	-		GFF121	0.83	+0.9
115,976	+		GFF121	0.86	-0.5
115,984	-		GFF121	0.87	+0.8
115,984	-		GFF121	0.87	+0.9
116,019	-		GFF121	0.90	-1.2
116,024	-		GFF121	0.90	+0.1
116,032	+				+0.4
116,032	+				-1.2
116,097	+				-0.4
116,128	-				+0.9
116,131	-				+0.1
116,147	-				-0.2
116,177	-				-0.9
116,185	-				-1.3
116,185	-				+0.5
116,198	-				+0.5
116,202	+				+0.2
116,208	-				+0.7
116,208	-				+0.9
116,208	-				-1.4
116,210	-				+0.2
116,222	+				-0.1
116,283	+				+0.8
116,283	+				+0.5
116,283	+				-1.9
116,283	-				-0.8
116,291	-				+0.5
116,304	-				-1.5
116,308	-				+0.6
116,354	+		GFF122	0.15	-1.7
116,398	+		GFF122	0.21	+0.6
116,429	-		GFF122	0.25	+1.1
116,449	-		GFF122	0.28	+2.0
116,458	+		GFF122	0.29	+0.3
116,466	-		GFF122	0.30	-0.3
116,499	-		GFF122	0.35	+0.5
116,507	+		GFF122	0.36	+0.2
116,507	+		GFF122	0.36	-2.7
116,507	-		GFF122	0.36	+0.2
116,513	+		GFF122	0.37	-0.2
116,515	-		GFF122	0.37	-2.2
116,515	-		GFF122	0.37	-0.4
116,515	-		GFF122	0.37	+1.4
116,515	-		GFF122	0.37	+0.4
116,553	-		GFF122	0.42	+0.2
116,556	+		GFF122	0.43	-1.1
116,564	-		GFF122	0.44	-0.4
116,564	-		GFF122	0.44	+0.6
116,564	-		GFF122	0.44	+0.3
116,564	-		GFF122	0.44	-2.2
116,570	+		GFF122	0.44	-1.5
116,648	-		GFF122	0.55	-0.6
116,672	-		GFF122	0.58	-0.7
116,674	+		GFF122	0.59	+0.3
116,674	+		GFF122	0.59	-0.6
116,674	+		GFF122	0.59	-0.9
116,674	+		GFF122	0.59	-0.2
116,674	+		GFF122	0.59	+0.7
116,674	+		GFF122	0.59	-0.0
116,674	+		GFF122	0.59	-0.3
116,674	+		GFF122	0.59	-0.4
116,674	+		GFF122	0.59	-0.0
116,674	+		GFF122	0.59	+0.6
116,674	+		GFF122	0.59	+0.6
116,682	-		GFF122	0.60	+0.8
116,682	-		GFF122	0.60	-1.6
116,684	+		GFF122	0.60	-1.2
116,684	+		GFF122	0.60	-0.6
116,684	+		GFF122	0.60	-2.0
116,692	-		GFF122	0.61	-0.1
116,692	-		GFF122	0.61	-0.7
116,731	-		GFF122	0.66	-0.2
116,736	-		GFF122	0.67	-0.7
116,748	+		GFF122	0.69	-0.8
116,748	+		GFF122	0.69	-0.3
116,753	+		GFF122	0.69	-2.1
116,756	+		GFF122	0.70	+1.0
116,756	-		GFF122	0.70	-0.2
116,756	-		GFF122	0.70	-1.3
116,771	+		GFF122	0.72	-0.6
116,771	+		GFF122	0.72	-1.7
116,771	+		GFF122	0.72	-0.8
116,771	+		GFF122	0.72	-1.9
116,771	+		GFF122	0.72	-1.1
116,771	+		GFF122	0.72	-0.9
116,771	+		GFF122	0.72	+1.3
116,771	+		GFF122	0.72	-2.2
116,771	+		GFF122	0.72	+1.2
116,771	+		GFF122	0.72	-1.0
116,779	-		GFF122	0.73	+0.7
116,779	-		GFF122	0.73	-0.0
116,779	-		GFF122	0.73	-0.8
116,779	-		GFF122	0.73	+0.6
116,779	-		GFF122	0.73	-0.9
116,779	-		GFF122	0.73	-0.6
116,779	-		GFF122	0.73	+0.5
116,788	-		GFF122	0.74	+0.3
116,814	+		GFF122	0.78	-0.6
116,814	+		GFF122	0.78	-1.5
116,814	+		GFF122	0.78	-0.6
116,822	-		GFF122	0.79	-1.1
116,822	-		GFF122	0.79	-0.5
116,822	-		GFF122	0.79	+1.0
116,838	-		GFF122	0.81	+0.4
116,839	+		GFF122	0.81	+0.0
116,841	+		GFF122	0.81	-0.2
116,851	+		GFF122	0.83	+0.0
116,851	+		GFF122	0.83	+0.4
116,852	+		GFF122	0.83	+0.2
116,852	+		GFF122	0.83	-1.2
116,907	-				-0.2
116,922	-				-0.7
116,930	-				-1.6
116,932	+				+0.0
116,944	+				-0.4
116,949	+				-0.8
116,952	-				-0.6
116,985	+				+1.5
116,987	+				-1.4
117,033	+				+0.3
117,033	+				-0.9
117,041	-				-1.5
117,041	-				+0.5
117,042	-				-0.3
117,051	+				-2.2
117,093	+				-0.9
117,093	+				-0.5
117,093	+				+1.0
117,095	-				-1.2
117,096	-				-0.3
117,096	-				+0.1
117,101	+				-0.4
117,101	+				+0.6
117,101	-				-0.7
117,101	-				-0.5
117,101	-				-0.4
117,101	-				+0.5
117,112	+				+0.8
117,112	+				-2.3
117,112	+				-0.6
117,112	+				-0.6
117,112	+				+0.5
117,120	-				-1.9
117,120	-				-0.3
117,137	-				+0.8
117,143	+				+0.2
117,144	-				-1.7
117,144	-				-0.3
117,148	+				-0.1
117,154	+				-0.3