Strain Fitness in Sphingobium sp. HT1-2 around GFF115

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
105,176	+				-1.3
105,176	+				-1.4
105,176	+				+0.2
105,176	+				+0.0
105,184	-				-0.1
105,184	-				-0.6
105,184	-				+0.2
105,184	-				-0.8
105,184	-				+0.4
105,184	-				-1.2
105,184	-				-0.4
105,202	+				-0.1
105,212	+				+0.0
105,221	+				-1.2
105,237	+		GFF114	0.11	+0.9
105,259	+		GFF114	0.13	-1.0
105,260	+		GFF114	0.13	-0.9
105,260	+		GFF114	0.13	+0.5
105,260	+		GFF114	0.13	-0.6
105,260	+		GFF114	0.13	-0.6
105,260	+		GFF114	0.13	-1.8
105,267	-		GFF114	0.14	+0.6
105,268	-		GFF114	0.14	+1.0
105,276	+		GFF114	0.15	+1.1
105,286	+		GFF114	0.16	-1.2
105,287	-		GFF114	0.16	+0.3
105,292	-		GFF114	0.17	-0.0
105,292	-		GFF114	0.17	-0.9
105,329	+		GFF114	0.21	-2.7
105,329	+		GFF114	0.21	+1.2
105,334	+		GFF114	0.22	-0.0
105,337	-		GFF114	0.22	-1.2
105,337	-		GFF114	0.22	-1.2
105,350	-		GFF114	0.24	+0.1
105,350	-		GFF114	0.24	-0.3
105,360	-		GFF114	0.25	-0.3
105,367	-		GFF114	0.25	-1.0
105,367	-		GFF114	0.25	-0.4
105,400	+		GFF114	0.29	-0.6
105,433	-		GFF114	0.33	+0.4
105,433	-		GFF114	0.33	+0.5
105,440	+		GFF114	0.34	+0.3
105,441	-		GFF114	0.34	+1.8
105,453	+		GFF114	0.35	+0.3
105,461	-		GFF114	0.36	-2.3
105,467	-		GFF114	0.37	+0.2
105,476	+		GFF114	0.38	+0.1
105,491	+		GFF114	0.40	-0.7
105,491	+		GFF114	0.40	-0.7
105,491	+		GFF114	0.40	+0.6
105,496	+		GFF114	0.40	-0.5
105,512	+		GFF114	0.42	-0.6
105,512	+		GFF114	0.42	-1.0
105,512	+		GFF114	0.42	-0.0
105,512	+		GFF114	0.42	-2.2
105,512	+		GFF114	0.42	-0.5
105,512	+		GFF114	0.42	-1.0
105,520	-		GFF114	0.43	+1.1
105,520	-		GFF114	0.43	-1.0
105,520	-		GFF114	0.43	-0.9
105,520	-		GFF114	0.43	-0.6
105,526	-		GFF114	0.44	+0.7
105,534	-		GFF114	0.44	-1.9
105,547	+		GFF114	0.46	-1.1
105,547	+		GFF114	0.46	+0.6
105,555	-		GFF114	0.47	+0.1
105,555	-		GFF114	0.47	-0.1
105,555	-		GFF114	0.47	-1.8
105,555	-		GFF114	0.47	+0.4
105,564	+		GFF114	0.48	+0.1
105,601	-		GFF114	0.52	+0.3
105,603	+		GFF114	0.52	-1.3
105,603	+		GFF114	0.52	-0.5
105,611	-		GFF114	0.53	+0.6
105,611	-		GFF114	0.53	-1.0
105,613	+		GFF114	0.53	-1.4
105,613	+		GFF114	0.53	+1.2
105,631	+		GFF114	0.56	-0.5
105,639	+		GFF114	0.56	+0.0
105,639	-		GFF114	0.56	+0.6
105,656	+		GFF114	0.58	-1.1
105,669	+		GFF114	0.60	-0.8
105,669	+		GFF114	0.60	-1.1
105,669	+		GFF114	0.60	-0.4
105,669	+		GFF114	0.60	+0.5
105,669	+		GFF114	0.60	+0.1
105,677	-		GFF114	0.61	+1.6
105,677	-		GFF114	0.61	-0.0
105,677	-		GFF114	0.61	-0.6
105,682	+		GFF114	0.61	-0.0
105,689	+		GFF114	0.62	-0.8
105,689	+		GFF114	0.62	-2.3
105,689	+		GFF114	0.62	-0.4
105,692	-		GFF114	0.62	-2.7
105,694	+		GFF114	0.63	+0.4
105,697	-		GFF114	0.63	-1.1
105,697	-		GFF114	0.63	-0.0
105,697	-		GFF114	0.63	+0.6
105,697	-		GFF114	0.63	-0.0
105,699	-		GFF114	0.63	+1.6
105,710	-		GFF114	0.65	-1.9
105,715	-		GFF114	0.65	+1.5
105,722	+		GFF114	0.66	-0.2
105,727	+		GFF114	0.66	+1.4
105,735	-		GFF114	0.67	+0.2
105,737	-		GFF114	0.68	+0.3
105,739	-		GFF114	0.68	-2.3
105,739	-		GFF114	0.68	-1.0
105,739	-		GFF114	0.68	+0.7
105,749	+		GFF114	0.69	-0.1
105,749	+		GFF114	0.69	+1.1
105,770	+		GFF114	0.71	-0.6
105,778	-		GFF114	0.72	-0.4
105,780	+		GFF114	0.72	-0.6
105,788	-		GFF114	0.73	+1.0
105,793	-		GFF114	0.74	+0.5
105,793	-		GFF114	0.74	-0.1
105,798	-		GFF114	0.75	-1.2
105,808	-		GFF114	0.76	-0.2
105,821	-		GFF114	0.77	-0.3
105,835	+		GFF114	0.79	-0.9
105,843	-		GFF114	0.80	-0.1
105,865	-		GFF114	0.82	+1.3
105,865	-		GFF114	0.82	-1.6
105,870	-		GFF114	0.83	-1.2
105,914	-		GFF114	0.88	-1.3
105,916	+		GFF114	0.88	+1.0
105,919	-		GFF114	0.88	+0.5
105,924	-		GFF114	0.89	-0.2
105,932	-		GFF114	0.90	+0.3
105,932	-		GFF114	0.90	+0.9
105,954	+				+2.2
105,973	+				-0.6
105,973	+				-0.3
105,974	+				-0.5
105,981	-				-0.0
105,982	-				-0.2
105,982	-				+0.2
106,031	-				-0.5
106,101	+				+0.1
106,118	+				-0.4
106,120	+				-0.6
106,128	-				-2.1
106,143	+				-0.5
108,377	+		GFF115	0.86	+1.3
108,428	+		GFF115	0.88	+1.1
108,604	+				+0.4
108,626	-				+0.2
108,649	+				+0.8
108,657	-				-0.6
108,669	+				+0.5
108,697	+				+0.6
108,733	+				-0.7
108,738	-				-0.4
108,741	-				-0.0
108,773	+				-1.4
108,779	+				+0.1
108,822	-				-0.6
108,887	-				-1.6
108,894	-				-2.0
108,898	-				-0.8
108,947	-		GFF116	0.12	-2.1
108,984	-		GFF116	0.14	-1.2
108,992	+		GFF116	0.15	+1.1
108,992	+		GFF116	0.15	-1.2
109,026	+		GFF116	0.17	-0.1
109,027	-		GFF116	0.17	-0.4
109,027	-		GFF116	0.17	-0.3
109,034	-		GFF116	0.18	+0.2
109,034	-		GFF116	0.18	-0.8
109,036	+		GFF116	0.18	-1.1
109,044	-		GFF116	0.18	-0.2
109,060	+		GFF116	0.20	-2.2
109,077	-		GFF116	0.21	-1.0
109,079	+		GFF116	0.21	+0.3
109,082	-		GFF116	0.21	-1.3
109,087	-		GFF116	0.21	-1.8
109,099	+		GFF116	0.22	-1.0
109,099	+		GFF116	0.22	-0.2
109,099	+		GFF116	0.22	+0.2
109,099	+		GFF116	0.22	+0.0
109,099	+		GFF116	0.22	-0.2
109,107	-		GFF116	0.23	+0.5
109,107	-		GFF116	0.23	-0.1
109,107	-		GFF116	0.23	-0.9
109,107	-		GFF116	0.23	-2.4
109,117	+		GFF116	0.23	-0.1
109,128	+		GFF116	0.24	+1.0
109,130	-		GFF116	0.24	-0.1
109,146	-		GFF116	0.25	+0.0
109,149	-		GFF116	0.26	+0.4
109,174	-		GFF116	0.27	-0.8
109,187	+		GFF116	0.28	-1.1
109,217	+		GFF116	0.30	-2.3
109,249	+		GFF116	0.32	-0.1
109,249	+		GFF116	0.32	+0.3
109,249	+		GFF116	0.32	-1.0
109,257	-		GFF116	0.33	-0.0
109,257	-		GFF116	0.33	-2.3
109,257	-		GFF116	0.33	+0.6
109,257	-		GFF116	0.33	-2.3
109,273	+		GFF116	0.34	-0.2
109,275	+		GFF116	0.34	-1.2
109,275	+		GFF116	0.34	-0.0
109,279	+		GFF116	0.34	+0.9
109,279	+		GFF116	0.34	-0.1
109,287	-		GFF116	0.35	-0.8
109,287	-		GFF116	0.35	+0.9
109,309	+		GFF116	0.36	-1.3
109,316	+		GFF116	0.37	+1.7
109,352	+		GFF116	0.39	-0.4
109,354	-		GFF116	0.39	-0.5
109,360	+		GFF116	0.40	-0.1
109,360	+		GFF116	0.40	-1.9
109,363	-		GFF116	0.40	+0.8
109,367	+		GFF116	0.40	-0.2
109,368	-		GFF116	0.40	-1.3
109,379	+		GFF116	0.41	-0.9
109,405	+		GFF116	0.43	-1.8
109,436	+		GFF116	0.45	-2.3
109,442	+		GFF116	0.45	-0.2
109,442	+		GFF116	0.45	-1.5
109,442	+		GFF116	0.45	-0.4
109,450	-		GFF116	0.46	-0.6
109,450	-		GFF116	0.46	-0.2
109,455	-		GFF116	0.46	-0.2
109,462	-		GFF116	0.47	-1.1
109,478	-		GFF116	0.48	-0.4
109,516	+		GFF116	0.50	+0.6
109,524	-		GFF116	0.51	-1.3
109,525	-		GFF116	0.51	-1.1
109,534	+		GFF116	0.51	-1.7
109,584	+		GFF116	0.55	+0.9
109,584	+		GFF116	0.55	-2.7
109,592	-		GFF116	0.55	-1.1
109,592	-		GFF116	0.55	+0.2
109,592	-		GFF116	0.55	+0.3
109,617	-		GFF116	0.57	-1.2
109,649	+		GFF116	0.59	+0.1
109,689	+		GFF116	0.62	-1.2
109,689	+		GFF116	0.62	-0.5
109,689	+		GFF116	0.62	+0.4
109,697	-		GFF116	0.62	-2.5
109,720	+		GFF116	0.64	-1.7
109,735	+		GFF116	0.65	-1.0
109,735	+		GFF116	0.65	-1.1
109,735	+		GFF116	0.65	-0.3