Strain Fitness in Sphingobium sp. HT1-2 around GFF1063

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,066,764	+		GFF1061	0.65	-1.6
1,066,764	+		GFF1061	0.65	-1.0
1,066,772	-		GFF1061	0.66	-2.1
1,066,772	-		GFF1061	0.66	-0.8
1,066,834	+		GFF1061	0.72	+0.1
1,066,849	+		GFF1061	0.73	-0.5
1,066,860	+		GFF1061	0.74	-0.7
1,066,865	+		GFF1061	0.75	+0.9
1,066,870	+		GFF1061	0.75	-2.2
1,066,870	+		GFF1061	0.75	-2.0
1,066,870	+		GFF1061	0.75	-0.5
1,066,870	+		GFF1061	0.75	-2.5
1,066,870	+		GFF1061	0.75	-0.5
1,066,873	-		GFF1061	0.75	+0.2
1,066,878	-		GFF1061	0.76	+1.5
1,066,878	-		GFF1061	0.76	-0.5
1,066,883	-		GFF1061	0.76	+0.5
1,066,897	-		GFF1061	0.78	-2.0
1,066,897	-		GFF1061	0.78	+0.4
1,066,897	-		GFF1061	0.78	-0.5
1,066,899	-		GFF1061	0.78	+0.4
1,066,929	-		GFF1061	0.81	-1.2
1,066,934	+		GFF1061	0.81	+1.0
1,066,974	+		GFF1061	0.85	+0.0
1,066,982	-		GFF1061	0.86	+1.0
1,066,985	+		GFF1061	0.86	+0.7
1,066,987	-		GFF1061	0.86	+1.5
1,066,987	-		GFF1061	0.86	+0.0
1,066,987	-		GFF1061	0.86	-0.4
1,066,987	-		GFF1061	0.86	+0.2
1,067,000	+		GFF1061	0.87	+1.1
1,067,001	+		GFF1061	0.87	-2.1
1,067,003	-		GFF1061	0.87	-1.8
1,067,049	-				-3.1
1,067,062	-				-1.3
1,067,062	-				-0.5
1,067,062	-				+0.7
1,067,062	-				-0.6
1,067,072	+				+0.7
1,067,072	-				-1.5
1,067,080	-				+1.6
1,067,087	-				-0.1
1,067,087	-				-0.2
1,067,089	+				-0.9
1,067,093	+				-0.7
1,067,101	-				-2.6
1,067,141	+				+0.7
1,067,146	+				+1.1
1,067,146	+				-1.7
1,067,149	-				+1.2
1,067,149	-				+0.7
1,067,154	-				+0.6
1,067,174	+				+0.3
1,067,174	+				+1.1
1,067,174	+				+0.9
1,067,182	-				-0.2
1,067,182	-				-0.7
1,067,225	+		GFF1062	0.11	-1.0
1,067,661	+				-0.7
1,067,690	+				-1.5
1,067,690	+				-0.4
1,067,690	+				-0.8
1,067,698	-				-0.6
1,067,698	-				-0.1
1,067,718	+				+1.3
1,067,719	+				+0.0
1,067,719	+				-1.1
1,067,719	+				-0.3
1,067,719	+				-0.8
1,067,719	+				-0.4
1,067,727	-				+0.4
1,067,727	-				+0.7
1,067,727	-				-1.4
1,067,727	-				-0.1
1,067,731	+				+1.6
1,067,732	+				-0.1
1,067,732	+				+0.4
1,067,732	+				+0.7
1,067,732	+				-2.0
1,067,732	+				+1.0
1,067,732	+				-1.8
1,067,732	+				-1.0
1,067,732	+				+0.4
1,067,732	+				+0.3
1,067,732	+				-0.8
1,067,737	+				-0.4
1,067,737	+				+0.5
1,067,740	-				-1.5
1,067,740	-				+0.5
1,067,740	-				+0.7
1,067,740	-				-1.6
1,067,740	-				-0.4
1,067,740	-				-0.1
1,067,740	-				-1.0
1,067,740	-				+0.5
1,067,740	-				+0.5
1,067,758	-				-1.7
1,067,763	-				+0.0
1,067,789	+				+0.4
1,067,818	-		GFF1063	0.11	+0.5
1,067,828	-		GFF1063	0.12	+0.0
1,067,830	+		GFF1063	0.12	-0.3
1,067,830	+		GFF1063	0.12	+0.2
1,067,836	-		GFF1063	0.13	+0.7
1,067,858	+		GFF1063	0.17	-0.9
1,067,858	+		GFF1063	0.17	-0.8
1,067,863	+		GFF1063	0.17	-0.8
1,067,871	+		GFF1063	0.19	+0.8
1,067,876	-		GFF1063	0.19	-1.6
1,067,890	+		GFF1063	0.21	-0.5
1,067,890	+		GFF1063	0.21	-0.6
1,067,897	+		GFF1063	0.22	-1.1
1,067,902	+		GFF1063	0.23	-2.7
1,067,911	-		GFF1063	0.25	-1.3
1,067,918	-		GFF1063	0.26	-0.0
1,067,941	+		GFF1063	0.29	-0.6
1,067,961	-		GFF1063	0.32	-0.4
1,067,966	-		GFF1063	0.33	+0.6
1,067,975	-		GFF1063	0.34	+1.0
1,067,988	+		GFF1063	0.36	+1.2
1,067,991	-		GFF1063	0.36	-0.1
1,067,991	-		GFF1063	0.36	+0.6
1,067,991	-		GFF1063	0.36	-0.3
1,067,991	-		GFF1063	0.36	-0.8
1,067,993	+		GFF1063	0.37	-0.4
1,067,996	-		GFF1063	0.37	-1.2
1,067,996	-		GFF1063	0.37	-0.1
1,067,996	-		GFF1063	0.37	+0.2
1,067,996	-		GFF1063	0.37	-0.3
1,067,998	+		GFF1063	0.38	+0.5
1,067,998	+		GFF1063	0.38	-2.1
1,068,001	-		GFF1063	0.38	+0.9
1,068,006	-		GFF1063	0.39	-0.3
1,068,006	-		GFF1063	0.39	+0.7
1,068,006	-		GFF1063	0.39	-0.6
1,068,018	+		GFF1063	0.41	-0.9
1,068,018	+		GFF1063	0.41	-0.4
1,068,018	+		GFF1063	0.41	+0.9
1,068,025	+		GFF1063	0.42	+1.0
1,068,026	-		GFF1063	0.42	-1.8
1,068,026	-		GFF1063	0.42	-0.8
1,068,038	+		GFF1063	0.43	+0.2
1,068,046	-		GFF1063	0.45	-2.3
1,068,089	+		GFF1063	0.51	-0.2
1,068,108	+		GFF1063	0.54	-0.7
1,068,108	+		GFF1063	0.54	-1.9
1,068,111	+		GFF1063	0.54	-1.0
1,068,121	+		GFF1063	0.56	+0.4
1,068,129	-		GFF1063	0.57	+0.1
1,068,133	+		GFF1063	0.58	+1.0
1,068,133	+		GFF1063	0.58	-0.5
1,068,136	-		GFF1063	0.58	+0.6
1,068,141	-		GFF1063	0.59	-0.5
1,068,141	-		GFF1063	0.59	-0.4
1,068,175	+		GFF1063	0.64	+0.7
1,068,185	+		GFF1063	0.65	-0.0
1,068,209	+		GFF1063	0.69	-0.7
1,068,231	+		GFF1063	0.72	-0.9
1,068,249	-		GFF1063	0.75	+1.5
1,068,291	+		GFF1063	0.81	-0.4
1,068,307	+		GFF1063	0.84	-0.0
1,068,307	+		GFF1063	0.84	+0.8
1,068,315	-		GFF1063	0.85	+2.0
1,068,358	+				+1.0
1,068,358	+				+0.5
1,068,358	+				-0.2
1,068,364	+				+0.2
1,068,365	+				-0.1
1,068,366	-				-0.5
1,068,366	-				+0.5
1,068,366	-				+0.0
1,068,366	-				-0.4
1,068,366	-				-1.1
1,068,370	+				+0.2
1,068,380	-				-0.0
1,068,382	+				-1.3
1,068,382	+				+0.4
1,068,382	+				-0.4
1,068,382	+				+0.4
1,068,382	+				-1.7
1,068,382	+				-1.0
1,068,382	+				+0.0
1,068,382	+				+0.4
1,068,382	+				+0.7
1,068,390	-				+0.3
1,068,390	-				+0.4
1,068,390	-				-0.3
1,068,395	-				-0.5
1,068,395	-				-0.7
1,068,395	-				-0.3
1,068,397	+				-1.0
1,068,414	+				+0.7
1,068,414	+				+0.8
1,068,414	+				+0.0
1,068,414	+				+0.1
1,068,414	+				-0.0
1,068,414	+				-0.0
1,068,414	+				+0.5
1,068,414	+				-0.0
1,068,414	+				+0.2
1,068,414	+				-1.2
1,068,414	+				+0.5
1,068,414	+				-1.5
1,068,414	+				+0.3
1,068,414	+				-1.4
1,068,414	+				-0.1
1,068,414	+				+0.3
1,068,414	+				-0.7
1,068,414	+				-0.0
1,068,422	-				+0.0
1,068,422	-				+0.7
1,068,422	-				-0.3
1,068,422	-				-0.6
1,068,422	-				-0.2
1,068,422	-				-1.1
1,068,422	-				+1.1
1,068,422	-				+0.4
1,068,422	-				-0.8
1,068,422	-				+0.1
1,068,422	-				-0.5
1,068,422	-				-2.4
1,068,422	-				-0.9
1,068,422	-				+1.2
1,068,422	-				-2.2
1,068,422	-				-0.7
1,068,422	-				-1.2
1,068,422	-				-0.9
1,068,424	+				-1.6
1,068,424	+				-0.5
1,068,424	+				+1.3
1,068,432	-				+0.2
1,068,432	-				-0.1
1,068,444	-				+0.1
1,068,476	+				-1.3
1,068,476	+				+0.3
1,068,476	+				+0.4
1,068,476	+				+0.9
1,068,479	-				-0.3
1,068,484	-				-0.7
1,068,484	-				-1.0
1,068,490	+				-0.3
1,068,491	+				-0.2
1,068,495	+				-2.3
1,068,495	+				+0.1
1,068,497	+				-1.9
1,068,499	-				-2.0
1,068,503	-				-1.5
1,068,524	+				+0.2
1,068,526	+				+1.7
1,068,531	+				-1.2
1,068,531	+				-1.5
1,068,533	-				-0.9
1,068,533	-				-0.5
1,068,539	-		GFF1064	0.11	-0.4
1,068,539	-		GFF1064	0.11	+0.2
1,068,539	-		GFF1064	0.11	-0.3
1,068,545	+		GFF1064	0.12	-0.9
1,068,563	-		GFF1064	0.14	-1.2
1,068,599	-		GFF1064	0.19	-0.7
1,068,647	-		GFF1064	0.25	+0.7
1,068,650	+		GFF1064	0.26	+0.1
1,068,672	+		GFF1064	0.29	+0.1
1,068,688	-		GFF1064	0.31	-1.8
1,068,737	-		GFF1064	0.38	-0.3
1,068,800	-		GFF1064	0.46	+0.5
1,068,805	-		GFF1064	0.47	-0.8
1,068,805	-		GFF1064	0.47	-0.3
1,068,839	-		GFF1064	0.52	-1.1
1,068,858	-		GFF1064	0.54	-1.8
1,068,863	-		GFF1064	0.55	+0.5
1,068,878	-		GFF1064	0.57	-0.3
1,068,895	+		GFF1064	0.59	-0.2
1,068,895	+		GFF1064	0.59	-1.7
1,068,895	+		GFF1064	0.59	-1.5
1,068,903	-		GFF1064	0.60	-0.2
1,068,903	-		GFF1064	0.60	-0.1
1,068,908	+		GFF1064	0.61	-0.2
1,068,908	+		GFF1064	0.61	+0.3
1,068,912	+		GFF1064	0.61	+0.8
1,068,955	-		GFF1064	0.67	+0.7
1,068,985	-		GFF1064	0.71	-1.5
1,068,986	+		GFF1064	0.72	+0.1
1,068,986	+		GFF1064	0.72	-0.2
1,068,986	+		GFF1064	0.72	+0.2
1,068,990	-		GFF1064	0.72	-0.8
1,068,994	-		GFF1064	0.73	-0.3
1,068,994	-		GFF1064	0.73	-0.6
1,069,017	+		GFF1064	0.76	+0.2
1,069,019	-		GFF1064	0.76	-1.8
1,069,019	-		GFF1064	0.76	-0.2
1,069,059	+		GFF1064	0.81	+0.8
1,069,059	+		GFF1064	0.81	+0.6
1,069,067	-		GFF1064	0.83	-1.7
1,069,067	-		GFF1064	0.83	-1.1
1,069,067	-		GFF1064	0.83	-0.2
1,069,067	-		GFF1064	0.83	+0.9
1,069,077	+		GFF1064	0.84	-0.7
1,069,082	+		GFF1064	0.85	+0.2
1,069,092	-		GFF1064	0.86	-0.8
1,069,095	-		GFF1064	0.86	+0.9
1,069,149	+				-0.1
1,069,157	-				-0.6
1,069,159	+				-0.9
1,069,159	+				+0.3
1,069,173	+				-0.0
1,069,175	-				-1.2
1,069,176	+				-0.3
1,069,181	-				-1.0
1,069,187	-				+0.2
1,069,188	-				+1.0
1,069,191	-				-1.2
1,069,198	+				-0.4
1,069,206	-				+0.6
1,069,214	-				+0.7
1,069,222	+				+1.0
1,069,229	+				+0.2
1,069,229	+				-0.3
1,069,229	+				-2.8
1,069,229	+				-0.5
1,069,229	+				+1.2
1,069,229	+				+0.2
1,069,229	+				+1.7
1,069,229	+				+0.7
1,069,230	-				-1.2
1,069,230	-				-0.8
1,069,230	-				-0.8
1,069,232	-				+0.8
1,069,237	-				+0.5
1,069,237	-				+0.8
1,069,237	-				+0.9
1,069,237	-				-0.3
1,069,237	-				-0.1
1,069,237	-				-0.2
1,069,237	-				-0.2
1,069,237	-				+1.6
1,069,244	+				-0.5
1,069,256	+				+0.7
1,069,256	+				-1.9
1,069,256	+				+0.4
1,069,299	+				-1.3
1,069,307	-				-0.1
1,069,347	-				-0.4
1,069,352	-				+0.2
1,069,363	+				+0.1
1,069,372	+				+1.1
1,069,373	-				+1.7
1,069,380	+				+1.1
1,069,382	+				-1.7
1,069,382	+				+0.9
1,069,382	+				-0.2
1,069,382	+				-0.9