Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06967

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06965 and MPMX19_06966 are separated by 62 nucleotidesMPMX19_06966 and MPMX19_06967 are separated by 138 nucleotidesMPMX19_06967 and MPMX19_06968 are separated by 217 nucleotides MPMX19_06965: MPMX19_06965 - hypothetical protein, at 242,898 to 243,314 _06965 MPMX19_06966: MPMX19_06966 - hypothetical protein, at 243,377 to 244,135 _06966 MPMX19_06967: MPMX19_06967 - hypothetical protein, at 244,274 to 245,032 _06967 MPMX19_06968: MPMX19_06968 - hypothetical protein, at 245,250 to 246,743 _06968 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 243.312 kb on + strandat 243.312 kb on + strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.398 kb on + strandat 243.398 kb on + strandat 243.399 kb on - strandat 243.399 kb on - strandat 243.399 kb on - strandat 243.603 kb on + strand, within MPMX19_06966at 243.628 kb on + strand, within MPMX19_06966at 243.716 kb on - strand, within MPMX19_06966at 243.773 kb on - strand, within MPMX19_06966at 243.776 kb on + strand, within MPMX19_06966at 243.780 kb on + strand, within MPMX19_06966at 244.109 kb on + strandat 244.109 kb on + strandat 244.141 kb on + strandat 244.141 kb on + strandat 244.141 kb on + strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.297 kb on + strandat 244.297 kb on + strandat 244.298 kb on - strandat 244.516 kb on + strand, within MPMX19_06967at 244.557 kb on + strand, within MPMX19_06967at 244.624 kb on + strand, within MPMX19_06967at 244.726 kb on - strand, within MPMX19_06967at 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.007 kb on - strandat 245.163 kb on + strandat 245.164 kb on - strandat 245.164 kb on - strandat 245.178 kb on + strandat 245.179 kb on - strandat 245.179 kb on - strandat 245.179 kb on - strandat 245.328 kb on + strandat 245.328 kb on + strandat 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.403 kb on + strand, within MPMX19_06968at 245.404 kb on - strand, within MPMX19_06968at 245.404 kb on - strand, within MPMX19_06968at 245.423 kb on + strand, within MPMX19_06968at 245.423 kb on + strand, within MPMX19_06968at 245.424 kb on - strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.442 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.466 kb on + strand, within MPMX19_06968at 245.467 kb on - strand, within MPMX19_06968at 245.467 kb on - strand, within MPMX19_06968at 245.775 kb on + strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.776 kb on - strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.835 kb on + strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968at 245.836 kb on - strand, within MPMX19_06968

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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243,312 + +0.7
243,312 + +0.3
243,313 - +1.2
243,313 - -0.6
243,313 - -0.4
243,398 + -1.0
243,398 + +0.2
243,399 - -0.9
243,399 - -0.7
243,399 - +0.7
243,603 + MPMX19_06966 0.30 +0.9
243,628 + MPMX19_06966 0.33 -0.1
243,716 - MPMX19_06966 0.45 -1.0
243,773 - MPMX19_06966 0.52 -1.0
243,776 + MPMX19_06966 0.53 +1.2
243,780 + MPMX19_06966 0.53 -0.1
244,109 + -1.6
244,109 + +0.8
244,141 + -0.8
244,141 + -0.5
244,141 + -0.4
244,142 - +2.0
244,142 - -0.2
244,142 - -1.2
244,142 - -0.8
244,242 - -0.3
244,242 - -1.3
244,242 - +0.3
244,242 - +0.1
244,295 + -0.6
244,295 + -2.0
244,295 + +0.3
244,295 + -0.6
244,295 + -0.9
244,295 + -0.3
244,296 - +0.2
244,296 - +0.6
244,296 - +1.2
244,296 - +0.0
244,296 - -0.2
244,296 - +0.9
244,296 - -0.4
244,296 - +1.4
244,297 + +0.0
244,297 + +0.2
244,298 - +0.6
244,516 + MPMX19_06967 0.32 -1.7
244,557 + MPMX19_06967 0.37 -0.9
244,624 + MPMX19_06967 0.46 -0.9
244,726 - MPMX19_06967 0.60 -0.9
245,006 + -1.9
245,006 + -1.6
245,006 + +1.0
245,006 + -0.1
245,006 + +0.3
245,006 + -0.1
245,006 + -0.4
245,006 + +0.0
245,007 - -0.5
245,163 + -1.0
245,164 - +0.4
245,164 - -1.3
245,178 + +0.2
245,179 - +0.0
245,179 - -0.0
245,179 - -0.1
245,328 + +0.2
245,328 + -0.4
245,403 + MPMX19_06968 0.10 -0.6
245,403 + MPMX19_06968 0.10 +0.6
245,403 + MPMX19_06968 0.10 -1.1
245,403 + MPMX19_06968 0.10 -0.4
245,403 + MPMX19_06968 0.10 -1.7
245,404 - MPMX19_06968 0.10 -1.2
245,404 - MPMX19_06968 0.10 -1.5
245,423 + MPMX19_06968 0.12 +1.0
245,423 + MPMX19_06968 0.12 -0.9
245,424 - MPMX19_06968 0.12 +0.5
245,442 + MPMX19_06968 0.13 +0.3
245,442 + MPMX19_06968 0.13 +0.5
245,442 + MPMX19_06968 0.13 -0.5
245,466 + MPMX19_06968 0.14 +0.8
245,466 + MPMX19_06968 0.14 -1.7
245,466 + MPMX19_06968 0.14 +1.3
245,466 + MPMX19_06968 0.14 -0.7
245,466 + MPMX19_06968 0.14 -0.4
245,467 - MPMX19_06968 0.15 +1.6
245,467 - MPMX19_06968 0.15 -0.8
245,775 + MPMX19_06968 0.35 -0.4
245,776 - MPMX19_06968 0.35 -1.0
245,776 - MPMX19_06968 0.35 -1.1
245,776 - MPMX19_06968 0.35 -0.8
245,835 + MPMX19_06968 0.39 -0.2
245,835 + MPMX19_06968 0.39 +0.3
245,835 + MPMX19_06968 0.39 -0.7
245,836 - MPMX19_06968 0.39 -0.5
245,836 - MPMX19_06968 0.39 -0.5
245,836 - MPMX19_06968 0.39 -1.4
245,836 - MPMX19_06968 0.39 -0.2

Or see this region's nucleotide sequence