Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06947

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06945 and MPMX19_06946 are separated by 127 nucleotidesMPMX19_06946 and MPMX19_06947 overlap by 1 nucleotidesMPMX19_06947 and MPMX19_06948 overlap by 4 nucleotides MPMX19_06945: MPMX19_06945 - hypothetical protein, at 220,298 to 221,539 _06945 MPMX19_06946: MPMX19_06946 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 221,667 to 222,515 _06946 MPMX19_06947: MPMX19_06947 - hypothetical protein, at 222,515 to 222,898 _06947 MPMX19_06948: MPMX19_06948 - Peptidyl-lysine N-acetyltransferase Pat, at 222,895 to 225,072 _06948 Position (kb) 222 223Strain fitness (log2 ratio) -2 -1 0 1 2at 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.646 kb on + strandat 221.646 kb on + strandat 221.647 kb on - strandat 221.647 kb on - strandat 221.767 kb on - strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.825 kb on - strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.831 kb on - strand, within MPMX19_06946at 221.849 kb on - strand, within MPMX19_06946at 221.849 kb on - strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.079 kb on + strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.242 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.442 kb on + strandat 222.442 kb on + strandat 222.443 kb on - strandat 222.466 kb on + strandat 222.466 kb on + strandat 222.467 kb on - strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.564 kb on + strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.565 kb on - strand, within MPMX19_06947at 222.780 kb on + strand, within MPMX19_06947at 222.781 kb on - strand, within MPMX19_06947at 223.223 kb on + strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.224 kb on - strand, within MPMX19_06948at 223.496 kb on + strand, within MPMX19_06948at 223.497 kb on - strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948at 223.583 kb on + strand, within MPMX19_06948

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
221,530 + -0.6
221,530 + +0.3
221,530 + -0.2
221,530 + +0.7
221,530 + +0.7
221,530 + -0.3
221,530 + -0.2
221,531 - -2.2
221,531 - -1.4
221,531 - +0.1
221,531 - -1.6
221,531 - -0.2
221,531 - -0.1
221,531 - -0.7
221,531 - +1.0
221,531 - -0.9
221,646 + -0.9
221,646 + +0.2
221,647 - -1.1
221,647 - -1.1
221,767 - MPMX19_06946 0.12 -1.7
221,824 + MPMX19_06946 0.18 -1.5
221,824 + MPMX19_06946 0.18 +0.3
221,824 + MPMX19_06946 0.18 +0.6
221,824 + MPMX19_06946 0.18 -0.4
221,824 + MPMX19_06946 0.18 -1.4
221,824 + MPMX19_06946 0.18 -0.4
221,824 + MPMX19_06946 0.18 +1.8
221,825 - MPMX19_06946 0.19 -1.5
221,830 + MPMX19_06946 0.19 +0.4
221,830 + MPMX19_06946 0.19 -0.1
221,830 + MPMX19_06946 0.19 +0.3
221,830 + MPMX19_06946 0.19 +0.2
221,830 + MPMX19_06946 0.19 -1.1
221,831 - MPMX19_06946 0.19 -0.6
221,849 - MPMX19_06946 0.21 -1.3
221,849 - MPMX19_06946 0.21 -1.1
221,911 + MPMX19_06946 0.29 +0.4
221,911 + MPMX19_06946 0.29 -0.5
221,911 + MPMX19_06946 0.29 -0.7
221,912 - MPMX19_06946 0.29 -0.7
221,912 - MPMX19_06946 0.29 +0.0
221,917 + MPMX19_06946 0.29 +0.0
221,917 + MPMX19_06946 0.29 +0.7
221,917 + MPMX19_06946 0.29 -0.4
221,917 + MPMX19_06946 0.29 +0.8
221,918 - MPMX19_06946 0.30 +0.9
221,918 - MPMX19_06946 0.30 +0.0
221,918 - MPMX19_06946 0.30 -0.6
221,956 + MPMX19_06946 0.34 -1.6
221,956 + MPMX19_06946 0.34 -1.6
221,956 + MPMX19_06946 0.34 -1.6
221,956 + MPMX19_06946 0.34 -0.3
221,956 + MPMX19_06946 0.34 -1.7
221,956 + MPMX19_06946 0.34 +0.5
221,957 - MPMX19_06946 0.34 -1.0
221,957 - MPMX19_06946 0.34 +0.5
221,957 - MPMX19_06946 0.34 -1.1
221,957 - MPMX19_06946 0.34 -0.9
221,957 - MPMX19_06946 0.34 +0.0
221,957 - MPMX19_06946 0.34 +0.6
221,957 - MPMX19_06946 0.34 -0.8
221,957 - MPMX19_06946 0.34 -0.5
221,957 - MPMX19_06946 0.34 -1.3
222,076 + MPMX19_06946 0.48 -1.3
222,076 + MPMX19_06946 0.48 +0.3
222,076 + MPMX19_06946 0.48 +0.0
222,076 + MPMX19_06946 0.48 -0.9
222,077 - MPMX19_06946 0.48 +0.7
222,077 - MPMX19_06946 0.48 -0.5
222,079 + MPMX19_06946 0.49 -0.7
222,080 - MPMX19_06946 0.49 +1.0
222,080 - MPMX19_06946 0.49 +0.3
222,080 - MPMX19_06946 0.49 -2.0
222,162 - MPMX19_06946 0.58 +0.6
222,162 - MPMX19_06946 0.58 -0.4
222,241 + MPMX19_06946 0.68 +0.9
222,241 + MPMX19_06946 0.68 +1.0
222,242 - MPMX19_06946 0.68 -0.6
222,263 - MPMX19_06946 0.70 -0.6
222,263 - MPMX19_06946 0.70 -0.2
222,263 - MPMX19_06946 0.70 -0.0
222,408 + MPMX19_06946 0.87 -1.0
222,408 + MPMX19_06946 0.87 -0.6
222,409 - MPMX19_06946 0.87 -0.1
222,409 - MPMX19_06946 0.87 +1.6
222,442 + +1.0
222,442 + -0.3
222,443 - -1.1
222,466 + -0.7
222,466 + +0.3
222,467 - -1.5
222,481 + +0.1
222,481 + +0.4
222,481 + +0.4
222,482 - -0.6
222,482 - -0.1
222,482 - +0.4
222,564 + MPMX19_06947 0.13 -0.4
222,564 + MPMX19_06947 0.13 +0.0
222,564 + MPMX19_06947 0.13 -1.3
222,564 + MPMX19_06947 0.13 -1.0
222,565 - MPMX19_06947 0.13 +0.1
222,565 - MPMX19_06947 0.13 -1.6
222,565 - MPMX19_06947 0.13 -0.2
222,565 - MPMX19_06947 0.13 -0.5
222,565 - MPMX19_06947 0.13 -1.4
222,565 - MPMX19_06947 0.13 -0.7
222,565 - MPMX19_06947 0.13 -1.5
222,780 + MPMX19_06947 0.69 +1.6
222,781 - MPMX19_06947 0.69 -0.1
223,223 + MPMX19_06948 0.15 +0.1
223,224 - MPMX19_06948 0.15 +0.3
223,224 - MPMX19_06948 0.15 -0.6
223,496 + MPMX19_06948 0.28 -0.6
223,497 - MPMX19_06948 0.28 -1.0
223,583 + MPMX19_06948 0.32 -1.1
223,583 + MPMX19_06948 0.32 -1.6
223,583 + MPMX19_06948 0.32 -0.9

Or see this region's nucleotide sequence