Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06915

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06914 and MPMX19_06915 are separated by 28 nucleotidesMPMX19_06915 and MPMX19_06916 are separated by 50 nucleotidesMPMX19_06916 and MPMX19_06917 are separated by 141 nucleotides MPMX19_06914: MPMX19_06914 - Acyl-CoA dehydrogenase FadE27, at 189,638 to 190,723 _06914 MPMX19_06915: MPMX19_06915 - Putative acyl-CoA dehydrogenase FadE17, at 190,752 to 191,894 _06915 MPMX19_06916: MPMX19_06916 - Crotonyl-CoA hydratase, at 191,945 to 192,745 _06916 MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819 _06917 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 190.337 kb on + strand, within MPMX19_06914at 190.337 kb on + strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.338 kb on - strand, within MPMX19_06914at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.561 kb on + strand, within MPMX19_06915at 191.562 kb on - strand, within MPMX19_06915at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.743 kb on + strandat 192.743 kb on + strandat 192.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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190,337 + MPMX19_06914 0.64 +0.9
190,337 + MPMX19_06914 0.64 -1.0
190,338 - MPMX19_06914 0.64 -1.6
190,338 - MPMX19_06914 0.64 -0.2
190,338 - MPMX19_06914 0.64 +0.4
190,980 + MPMX19_06915 0.20 +1.3
190,980 + MPMX19_06915 0.20 +0.0
190,980 + MPMX19_06915 0.20 +0.2
190,981 - MPMX19_06915 0.20 +0.2
190,981 - MPMX19_06915 0.20 -1.5
190,981 - MPMX19_06915 0.20 -2.3
190,981 - MPMX19_06915 0.20 -0.6
190,981 - MPMX19_06915 0.20 -1.0
190,981 - MPMX19_06915 0.20 +0.0
190,981 - MPMX19_06915 0.20 +1.3
190,981 - MPMX19_06915 0.20 +0.6
190,981 - MPMX19_06915 0.20 +0.5
190,981 - MPMX19_06915 0.20 +0.8
190,981 - MPMX19_06915 0.20 -0.7
191,244 + MPMX19_06915 0.43 -0.7
191,244 + MPMX19_06915 0.43 -0.6
191,244 + MPMX19_06915 0.43 -0.6
191,244 + MPMX19_06915 0.43 +1.6
191,244 + MPMX19_06915 0.43 +1.8
191,244 + MPMX19_06915 0.43 +1.2
191,244 + MPMX19_06915 0.43 -0.9
191,245 - MPMX19_06915 0.43 -0.9
191,245 - MPMX19_06915 0.43 +0.6
191,245 - MPMX19_06915 0.43 -0.6
191,262 + MPMX19_06915 0.45 +2.6
191,262 + MPMX19_06915 0.45 -1.6
191,262 + MPMX19_06915 0.45 +1.6
191,262 + MPMX19_06915 0.45 -2.0
191,262 + MPMX19_06915 0.45 -1.2
191,262 + MPMX19_06915 0.45 +0.0
191,262 + MPMX19_06915 0.45 +0.0
191,263 - MPMX19_06915 0.45 +0.8
191,263 - MPMX19_06915 0.45 -0.8
191,263 - MPMX19_06915 0.45 -1.1
191,263 - MPMX19_06915 0.45 -0.2
191,263 - MPMX19_06915 0.45 +0.2
191,263 - MPMX19_06915 0.45 -0.7
191,263 - MPMX19_06915 0.45 -1.0
191,561 + MPMX19_06915 0.71 -0.4
191,562 - MPMX19_06915 0.71 +0.3
192,206 + MPMX19_06916 0.33 -2.0
192,206 + MPMX19_06916 0.33 -0.9
192,206 + MPMX19_06916 0.33 -0.2
192,207 - MPMX19_06916 0.33 -0.3
192,207 - MPMX19_06916 0.33 -0.2
192,207 - MPMX19_06916 0.33 -0.3
192,207 - MPMX19_06916 0.33 +1.0
192,743 + +0.2
192,743 + +0.6
192,744 - -2.3

Or see this region's nucleotide sequence