Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06906

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06904 and MPMX19_06905 are separated by 40 nucleotidesMPMX19_06905 and MPMX19_06906 are separated by 101 nucleotidesMPMX19_06906 and MPMX19_06907 are separated by 58 nucleotides MPMX19_06904: MPMX19_06904 - putative tautomerase, at 179,649 to 179,840 _06904 MPMX19_06905: MPMX19_06905 - Transcriptional repressor IclR, at 179,881 to 180,717 _06905 MPMX19_06906: MPMX19_06906 - Acetyl-CoA:oxalate CoA-transferase, at 180,819 to 182,033 _06906 MPMX19_06907: MPMX19_06907 - L-talarate/galactarate dehydratase, at 182,092 to 183,267 _06907 Position (kb) 180 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 179.927 kb on + strandat 180.104 kb on + strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.105 kb on - strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.173 kb on + strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.174 kb on - strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.182 kb on + strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.183 kb on - strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.287 kb on + strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.288 kb on - strand, within MPMX19_06905at 180.290 kb on + strand, within MPMX19_06905at 180.291 kb on - strand, within MPMX19_06905at 180.350 kb on + strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.351 kb on - strand, within MPMX19_06905at 180.479 kb on + strand, within MPMX19_06905at 180.479 kb on + strand, within MPMX19_06905at 180.480 kb on - strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.509 kb on + strand, within MPMX19_06905at 180.510 kb on - strand, within MPMX19_06905at 180.510 kb on - strand, within MPMX19_06905at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.203 kb on + strand, within MPMX19_06906at 181.204 kb on - strand, within MPMX19_06906at 181.204 kb on - strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.288 kb on + strand, within MPMX19_06906at 181.289 kb on - strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.468 kb on + strand, within MPMX19_06906at 181.469 kb on - strand, within MPMX19_06906at 181.469 kb on - strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.630 kb on + strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.631 kb on - strand, within MPMX19_06906at 181.666 kb on + strand, within MPMX19_06906at 181.666 kb on + strand, within MPMX19_06906at 181.667 kb on - strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.813 kb on + strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.814 kb on - strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.816 kb on + strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.817 kb on - strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.837 kb on + strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 181.838 kb on - strand, within MPMX19_06906at 182.046 kb on + strandat 182.047 kb on - strandat 182.047 kb on - strandat 182.047 kb on - strandat 182.351 kb on + strand, within MPMX19_06907at 182.351 kb on + strand, within MPMX19_06907at 182.352 kb on - strand, within MPMX19_06907at 182.432 kb on + strand, within MPMX19_06907at 182.432 kb on + strand, within MPMX19_06907at 182.433 kb on - strand, within MPMX19_06907at 182.433 kb on - strand, within MPMX19_06907at 182.780 kb on + strand, within MPMX19_06907at 182.780 kb on + strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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179,927 + +0.3
180,104 + MPMX19_06905 0.27 -0.8
180,105 - MPMX19_06905 0.27 -1.2
180,105 - MPMX19_06905 0.27 -0.6
180,173 + MPMX19_06905 0.35 +1.6
180,173 + MPMX19_06905 0.35 +0.6
180,174 - MPMX19_06905 0.35 -0.2
180,174 - MPMX19_06905 0.35 +1.3
180,174 - MPMX19_06905 0.35 -2.0
180,174 - MPMX19_06905 0.35 +0.6
180,182 + MPMX19_06905 0.36 -2.2
180,182 + MPMX19_06905 0.36 -2.0
180,182 + MPMX19_06905 0.36 -0.7
180,182 + MPMX19_06905 0.36 -1.3
180,182 + MPMX19_06905 0.36 +0.9
180,183 - MPMX19_06905 0.36 -1.2
180,183 - MPMX19_06905 0.36 -2.2
180,287 + MPMX19_06905 0.49 -0.7
180,287 + MPMX19_06905 0.49 -0.2
180,287 + MPMX19_06905 0.49 +0.3
180,287 + MPMX19_06905 0.49 -1.2
180,287 + MPMX19_06905 0.49 +0.6
180,287 + MPMX19_06905 0.49 -0.0
180,287 + MPMX19_06905 0.49 -1.3
180,287 + MPMX19_06905 0.49 -1.9
180,287 + MPMX19_06905 0.49 -0.2
180,287 + MPMX19_06905 0.49 -0.6
180,287 + MPMX19_06905 0.49 -0.7
180,287 + MPMX19_06905 0.49 +1.9
180,288 - MPMX19_06905 0.49 +0.0
180,288 - MPMX19_06905 0.49 -0.6
180,288 - MPMX19_06905 0.49 -0.8
180,288 - MPMX19_06905 0.49 -1.3
180,288 - MPMX19_06905 0.49 -0.5
180,288 - MPMX19_06905 0.49 -0.0
180,288 - MPMX19_06905 0.49 -1.0
180,288 - MPMX19_06905 0.49 -0.9
180,288 - MPMX19_06905 0.49 +0.3
180,288 - MPMX19_06905 0.49 -2.2
180,288 - MPMX19_06905 0.49 -0.2
180,288 - MPMX19_06905 0.49 +0.2
180,288 - MPMX19_06905 0.49 -0.2
180,288 - MPMX19_06905 0.49 -0.9
180,288 - MPMX19_06905 0.49 -0.7
180,288 - MPMX19_06905 0.49 -0.2
180,288 - MPMX19_06905 0.49 +1.0
180,290 + MPMX19_06905 0.49 -0.8
180,291 - MPMX19_06905 0.49 +0.2
180,350 + MPMX19_06905 0.56 -0.1
180,351 - MPMX19_06905 0.56 +1.4
180,351 - MPMX19_06905 0.56 -0.3
180,351 - MPMX19_06905 0.56 -1.7
180,479 + MPMX19_06905 0.71 -0.4
180,479 + MPMX19_06905 0.71 +0.8
180,480 - MPMX19_06905 0.72 +0.9
180,509 + MPMX19_06905 0.75 +0.6
180,509 + MPMX19_06905 0.75 -1.5
180,509 + MPMX19_06905 0.75 -1.0
180,510 - MPMX19_06905 0.75 -0.9
180,510 - MPMX19_06905 0.75 -1.3
181,203 + MPMX19_06906 0.32 +0.1
181,203 + MPMX19_06906 0.32 -0.8
181,203 + MPMX19_06906 0.32 -0.4
181,203 + MPMX19_06906 0.32 -0.6
181,203 + MPMX19_06906 0.32 +0.1
181,203 + MPMX19_06906 0.32 +0.9
181,203 + MPMX19_06906 0.32 -0.4
181,204 - MPMX19_06906 0.32 -1.1
181,204 - MPMX19_06906 0.32 +0.1
181,288 + MPMX19_06906 0.39 +0.6
181,288 + MPMX19_06906 0.39 -0.6
181,288 + MPMX19_06906 0.39 -1.4
181,289 - MPMX19_06906 0.39 -0.1
181,468 + MPMX19_06906 0.53 -1.6
181,468 + MPMX19_06906 0.53 +0.5
181,468 + MPMX19_06906 0.53 +0.0
181,468 + MPMX19_06906 0.53 -0.5
181,468 + MPMX19_06906 0.53 -0.8
181,468 + MPMX19_06906 0.53 +1.2
181,469 - MPMX19_06906 0.53 -0.4
181,469 - MPMX19_06906 0.53 +0.4
181,630 + MPMX19_06906 0.67 -1.1
181,630 + MPMX19_06906 0.67 -1.2
181,630 + MPMX19_06906 0.67 -0.1
181,630 + MPMX19_06906 0.67 -0.3
181,631 - MPMX19_06906 0.67 +0.0
181,631 - MPMX19_06906 0.67 -0.3
181,631 - MPMX19_06906 0.67 -0.5
181,631 - MPMX19_06906 0.67 +0.7
181,631 - MPMX19_06906 0.67 +0.4
181,666 + MPMX19_06906 0.70 +0.7
181,666 + MPMX19_06906 0.70 -0.3
181,667 - MPMX19_06906 0.70 +0.3
181,813 + MPMX19_06906 0.82 +0.6
181,813 + MPMX19_06906 0.82 +0.0
181,813 + MPMX19_06906 0.82 -0.7
181,813 + MPMX19_06906 0.82 +0.2
181,813 + MPMX19_06906 0.82 -0.4
181,813 + MPMX19_06906 0.82 +0.4
181,813 + MPMX19_06906 0.82 -1.6
181,813 + MPMX19_06906 0.82 -1.6
181,813 + MPMX19_06906 0.82 -0.6
181,813 + MPMX19_06906 0.82 +0.5
181,814 - MPMX19_06906 0.82 +0.7
181,814 - MPMX19_06906 0.82 -0.1
181,814 - MPMX19_06906 0.82 -0.7
181,814 - MPMX19_06906 0.82 -0.0
181,814 - MPMX19_06906 0.82 -0.7
181,814 - MPMX19_06906 0.82 +0.5
181,814 - MPMX19_06906 0.82 +0.2
181,814 - MPMX19_06906 0.82 +0.6
181,814 - MPMX19_06906 0.82 +0.1
181,814 - MPMX19_06906 0.82 -1.9
181,816 + MPMX19_06906 0.82 -0.8
181,816 + MPMX19_06906 0.82 +0.2
181,816 + MPMX19_06906 0.82 -0.2
181,816 + MPMX19_06906 0.82 -1.9
181,817 - MPMX19_06906 0.82 -0.4
181,817 - MPMX19_06906 0.82 +0.2
181,817 - MPMX19_06906 0.82 -0.9
181,817 - MPMX19_06906 0.82 +0.3
181,837 + MPMX19_06906 0.84 +0.8
181,837 + MPMX19_06906 0.84 -0.5
181,837 + MPMX19_06906 0.84 +0.0
181,837 + MPMX19_06906 0.84 -0.4
181,837 + MPMX19_06906 0.84 -2.3
181,837 + MPMX19_06906 0.84 +0.3
181,837 + MPMX19_06906 0.84 -0.4
181,837 + MPMX19_06906 0.84 +0.5
181,837 + MPMX19_06906 0.84 +0.4
181,837 + MPMX19_06906 0.84 +0.8
181,838 - MPMX19_06906 0.84 -1.2
181,838 - MPMX19_06906 0.84 +0.2
181,838 - MPMX19_06906 0.84 -0.4
182,046 + -0.9
182,047 - -0.1
182,047 - -0.4
182,047 - -1.0
182,351 + MPMX19_06907 0.22 +1.1
182,351 + MPMX19_06907 0.22 +0.2
182,352 - MPMX19_06907 0.22 -0.6
182,432 + MPMX19_06907 0.29 -1.0
182,432 + MPMX19_06907 0.29 +0.6
182,433 - MPMX19_06907 0.29 +0.5
182,433 - MPMX19_06907 0.29 -0.6
182,780 + MPMX19_06907 0.59 -0.4
182,780 + MPMX19_06907 0.59 -0.2
182,781 - MPMX19_06907 0.59 -1.4
182,781 - MPMX19_06907 0.59 -1.0
182,781 - MPMX19_06907 0.59 -1.0
182,820 - MPMX19_06907 0.62 -0.5
182,820 - MPMX19_06907 0.62 -1.3

Or see this region's nucleotide sequence