Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06851

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06850 and MPMX19_06851 are separated by 27 nucleotidesMPMX19_06851 and MPMX19_06852 are separated by 10 nucleotidesMPMX19_06852 and MPMX19_06853 are separated by 57 nucleotides MPMX19_06850: MPMX19_06850 - putative tartrate dehydrogenase/decarboxylase TtuC', at 118,353 to 119,396 _06850 MPMX19_06851: MPMX19_06851 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 119,424 to 120,896 _06851 MPMX19_06852: MPMX19_06852 - hypothetical protein, at 120,907 to 121,278 _06852 MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259 _06853 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.754 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.425 kb on + strandat 119.426 kb on - strandat 119.426 kb on - strandat 119.426 kb on - strandat 119.467 kb on + strandat 119.467 kb on + strandat 119.467 kb on + strandat 119.468 kb on - strandat 119.468 kb on - strandat 119.468 kb on - strandat 119.509 kb on + strandat 119.510 kb on - strandat 119.548 kb on + strandat 119.620 kb on + strand, within MPMX19_06851at 119.621 kb on - strand, within MPMX19_06851at 119.621 kb on - strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.774 kb on - strand, within MPMX19_06851at 119.774 kb on - strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.780 kb on - strand, within MPMX19_06851at 119.893 kb on + strand, within MPMX19_06851at 120.769 kb on + strandat 120.769 kb on + strandat 120.769 kb on + strandat 120.770 kb on - strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.924 kb on - strandat 120.924 kb on - strandat 120.924 kb on - strandat 120.924 kb on - strandat 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.441 kb on - strand, within MPMX19_06853at 121.441 kb on - strand, within MPMX19_06853

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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118,753 + MPMX19_06850 0.38 -1.3
118,753 + MPMX19_06850 0.38 -0.5
118,753 + MPMX19_06850 0.38 -0.2
118,754 - MPMX19_06850 0.38 -0.6
118,994 - MPMX19_06850 0.61 -0.3
118,994 - MPMX19_06850 0.61 +0.3
119,095 + MPMX19_06850 0.71 -1.0
119,095 + MPMX19_06850 0.71 +1.3
119,095 + MPMX19_06850 0.71 -0.4
119,095 + MPMX19_06850 0.71 -0.3
119,095 + MPMX19_06850 0.71 -1.3
119,095 + MPMX19_06850 0.71 +0.0
119,198 - MPMX19_06850 0.81 -0.4
119,198 - MPMX19_06850 0.81 -1.9
119,198 - MPMX19_06850 0.81 -0.4
119,251 + MPMX19_06850 0.86 -1.1
119,251 + MPMX19_06850 0.86 -0.9
119,251 + MPMX19_06850 0.86 -1.7
119,251 + MPMX19_06850 0.86 -3.6
119,251 + MPMX19_06850 0.86 +1.0
119,252 - MPMX19_06850 0.86 -0.6
119,252 - MPMX19_06850 0.86 -0.5
119,252 - MPMX19_06850 0.86 -0.6
119,252 - MPMX19_06850 0.86 -0.3
119,252 - MPMX19_06850 0.86 -0.3
119,252 - MPMX19_06850 0.86 +0.9
119,425 + +0.1
119,426 - +1.4
119,426 - -0.7
119,426 - +0.2
119,467 + -1.2
119,467 + -1.0
119,467 + -1.1
119,468 - -0.3
119,468 - +0.1
119,468 - -1.0
119,509 + -0.1
119,510 - +0.3
119,548 + -0.4
119,620 + MPMX19_06851 0.13 +0.2
119,621 - MPMX19_06851 0.13 -1.4
119,621 - MPMX19_06851 0.13 -0.2
119,641 + MPMX19_06851 0.15 -0.7
119,641 + MPMX19_06851 0.15 -0.4
119,641 + MPMX19_06851 0.15 -0.1
119,641 + MPMX19_06851 0.15 +0.4
119,641 + MPMX19_06851 0.15 -1.0
119,641 + MPMX19_06851 0.15 -1.7
119,642 - MPMX19_06851 0.15 -0.9
119,642 - MPMX19_06851 0.15 -0.9
119,642 - MPMX19_06851 0.15 +1.8
119,642 - MPMX19_06851 0.15 -0.7
119,642 - MPMX19_06851 0.15 -0.8
119,774 - MPMX19_06851 0.24 -0.9
119,774 - MPMX19_06851 0.24 -0.2
119,779 + MPMX19_06851 0.24 -0.4
119,779 + MPMX19_06851 0.24 -0.6
119,779 + MPMX19_06851 0.24 -0.3
119,780 - MPMX19_06851 0.24 -0.2
119,893 + MPMX19_06851 0.32 -0.7
120,769 + +0.2
120,769 + +0.0
120,769 + -0.3
120,770 - -3.7
120,923 + -1.0
120,923 + -0.7
120,923 + -1.0
120,923 + -0.4
120,923 + -0.1
120,923 + -0.9
120,924 - -0.6
120,924 - +0.2
120,924 - -2.0
120,924 - +0.1
121,440 + MPMX19_06853 0.11 -1.2
121,440 + MPMX19_06853 0.11 +1.3
121,440 + MPMX19_06853 0.11 +0.4
121,440 + MPMX19_06853 0.11 -1.2
121,440 + MPMX19_06853 0.11 +0.4
121,441 - MPMX19_06853 0.11 -1.7
121,441 - MPMX19_06853 0.11 +0.3

Or see this region's nucleotide sequence