Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06849

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06848 and MPMX19_06849 are separated by 170 nucleotidesMPMX19_06849 and MPMX19_06850 are separated by 42 nucleotides MPMX19_06848: MPMX19_06848 - hypothetical protein, at 115,399 to 116,682 _06848 MPMX19_06849: MPMX19_06849 - Glutarate-semialdehyde dehydrogenase, at 116,853 to 118,310 _06849 MPMX19_06850: MPMX19_06850 - putative tartrate dehydrogenase/decarboxylase TtuC', at 118,353 to 119,396 _06850 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.907 kb on + strand, within MPMX19_06848at 115.907 kb on + strand, within MPMX19_06848at 115.908 kb on - strand, within MPMX19_06848at 115.908 kb on - strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.075 kb on + strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.076 kb on - strand, within MPMX19_06848at 116.145 kb on + strand, within MPMX19_06848at 116.145 kb on + strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.146 kb on - strand, within MPMX19_06848at 116.171 kb on + strand, within MPMX19_06848at 116.446 kb on + strand, within MPMX19_06848at 116.446 kb on + strand, within MPMX19_06848at 116.446 kb on + strand, within MPMX19_06848at 116.446 kb on + strand, within MPMX19_06848at 116.446 kb on + strand, within MPMX19_06848at 116.447 kb on - strand, within MPMX19_06848at 116.447 kb on - strand, within MPMX19_06848at 116.447 kb on - strand, within MPMX19_06848at 116.479 kb on + strand, within MPMX19_06848at 116.544 kb on + strand, within MPMX19_06848at 116.545 kb on - strand, within MPMX19_06848at 116.549 kb on + strand, within MPMX19_06848at 116.549 kb on + strand, within MPMX19_06848at 116.549 kb on + strand, within MPMX19_06848at 116.550 kb on - strand, within MPMX19_06848at 116.579 kb on + strandat 116.893 kb on + strandat 116.893 kb on + strandat 116.894 kb on - strandat 116.894 kb on - strandat 116.894 kb on - strandat 116.894 kb on - strandat 116.894 kb on - strandat 116.894 kb on - strandat 116.894 kb on - strandat 117.052 kb on + strand, within MPMX19_06849at 117.052 kb on + strand, within MPMX19_06849at 117.052 kb on + strand, within MPMX19_06849at 117.052 kb on + strand, within MPMX19_06849at 117.053 kb on - strand, within MPMX19_06849at 117.058 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.208 kb on + strand, within MPMX19_06849at 117.209 kb on - strand, within MPMX19_06849at 117.209 kb on - strand, within MPMX19_06849at 117.400 kb on + strand, within MPMX19_06849at 117.400 kb on + strand, within MPMX19_06849at 117.401 kb on - strand, within MPMX19_06849at 117.745 kb on + strand, within MPMX19_06849at 117.746 kb on - strand, within MPMX19_06849at 117.973 kb on + strand, within MPMX19_06849at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.754 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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115,907 + MPMX19_06848 0.40 +0.4
115,907 + MPMX19_06848 0.40 +1.4
115,908 - MPMX19_06848 0.40 -0.2
115,908 - MPMX19_06848 0.40 -0.6
116,075 + MPMX19_06848 0.53 -0.4
116,075 + MPMX19_06848 0.53 +1.2
116,075 + MPMX19_06848 0.53 -0.1
116,075 + MPMX19_06848 0.53 -1.2
116,076 - MPMX19_06848 0.53 +0.7
116,076 - MPMX19_06848 0.53 +0.6
116,076 - MPMX19_06848 0.53 -0.1
116,145 + MPMX19_06848 0.58 +0.4
116,145 + MPMX19_06848 0.58 +0.7
116,146 - MPMX19_06848 0.58 -1.0
116,146 - MPMX19_06848 0.58 -1.3
116,146 - MPMX19_06848 0.58 -2.5
116,171 + MPMX19_06848 0.60 +0.9
116,446 + MPMX19_06848 0.82 +1.6
116,446 + MPMX19_06848 0.82 -0.5
116,446 + MPMX19_06848 0.82 +0.0
116,446 + MPMX19_06848 0.82 +1.3
116,446 + MPMX19_06848 0.82 -0.3
116,447 - MPMX19_06848 0.82 +0.9
116,447 - MPMX19_06848 0.82 -1.0
116,447 - MPMX19_06848 0.82 -0.7
116,479 + MPMX19_06848 0.84 -1.2
116,544 + MPMX19_06848 0.89 -2.6
116,545 - MPMX19_06848 0.89 -1.9
116,549 + MPMX19_06848 0.90 +0.8
116,549 + MPMX19_06848 0.90 -0.7
116,549 + MPMX19_06848 0.90 -1.5
116,550 - MPMX19_06848 0.90 -0.5
116,579 + -1.4
116,893 + -0.7
116,893 + +1.1
116,894 - +0.3
116,894 - -2.0
116,894 - -1.0
116,894 - -2.2
116,894 - -0.8
116,894 - -0.7
116,894 - -2.1
117,052 + MPMX19_06849 0.14 -1.2
117,052 + MPMX19_06849 0.14 -0.1
117,052 + MPMX19_06849 0.14 -0.3
117,052 + MPMX19_06849 0.14 +0.8
117,053 - MPMX19_06849 0.14 -0.4
117,058 + MPMX19_06849 0.14 -2.1
117,208 + MPMX19_06849 0.24 -1.1
117,208 + MPMX19_06849 0.24 +0.5
117,208 + MPMX19_06849 0.24 -0.1
117,208 + MPMX19_06849 0.24 +0.1
117,208 + MPMX19_06849 0.24 -0.3
117,208 + MPMX19_06849 0.24 +0.6
117,208 + MPMX19_06849 0.24 -0.0
117,208 + MPMX19_06849 0.24 -0.8
117,209 - MPMX19_06849 0.24 -1.0
117,209 - MPMX19_06849 0.24 +0.4
117,400 + MPMX19_06849 0.38 -1.1
117,400 + MPMX19_06849 0.38 +1.0
117,401 - MPMX19_06849 0.38 -0.5
117,745 + MPMX19_06849 0.61 -0.4
117,746 - MPMX19_06849 0.61 -0.4
117,973 + MPMX19_06849 0.77 +0.3
118,753 + MPMX19_06850 0.38 -1.3
118,753 + MPMX19_06850 0.38 -0.5
118,753 + MPMX19_06850 0.38 -0.2
118,754 - MPMX19_06850 0.38 -0.6
118,994 - MPMX19_06850 0.61 -0.3
118,994 - MPMX19_06850 0.61 +0.3
119,095 + MPMX19_06850 0.71 -1.0
119,095 + MPMX19_06850 0.71 +1.3
119,095 + MPMX19_06850 0.71 -0.4
119,095 + MPMX19_06850 0.71 -0.3
119,095 + MPMX19_06850 0.71 -1.3
119,095 + MPMX19_06850 0.71 +0.0
119,198 - MPMX19_06850 0.81 -0.4
119,198 - MPMX19_06850 0.81 -1.9
119,198 - MPMX19_06850 0.81 -0.4
119,251 + MPMX19_06850 0.86 -1.1
119,251 + MPMX19_06850 0.86 -0.9
119,251 + MPMX19_06850 0.86 -1.7
119,251 + MPMX19_06850 0.86 -3.6
119,251 + MPMX19_06850 0.86 +1.0
119,252 - MPMX19_06850 0.86 -0.6
119,252 - MPMX19_06850 0.86 -0.5
119,252 - MPMX19_06850 0.86 -0.6
119,252 - MPMX19_06850 0.86 -0.3
119,252 - MPMX19_06850 0.86 -0.3
119,252 - MPMX19_06850 0.86 +0.9

Or see this region's nucleotide sequence