Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06839

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06837 and MPMX19_06838 are separated by 48 nucleotidesMPMX19_06838 and MPMX19_06839 are separated by 148 nucleotidesMPMX19_06839 and MPMX19_06840 overlap by 1 nucleotidesMPMX19_06840 and MPMX19_06841 overlap by 4 nucleotides MPMX19_06837: MPMX19_06837 - Putrescine--pyruvate aminotransferase, at 102,719 to 104,098 _06837 MPMX19_06838: MPMX19_06838 - hypothetical protein, at 104,147 to 104,350 _06838 MPMX19_06839: MPMX19_06839 - Glutathione import ATP-binding protein GsiA, at 104,499 to 106,148 _06839 MPMX19_06840: MPMX19_06840 - Glutathione transport system permease protein GsiD, at 106,148 to 107,038 _06840 MPMX19_06841: MPMX19_06841 - Glutathione transport system permease protein GsiC, at 107,035 to 107,985 _06841 Position (kb) 104 105 106 107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 103.551 kb on - strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.736 kb on - strand, within MPMX19_06837at 103.794 kb on - strand, within MPMX19_06837at 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.149 kb on - strandat 104.149 kb on - strandat 104.149 kb on - strandat 104.238 kb on + strand, within MPMX19_06838at 104.239 kb on - strand, within MPMX19_06838at 104.239 kb on - strand, within MPMX19_06838at 104.394 kb on - strandat 104.394 kb on - strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.398 kb on - strandat 104.414 kb on - strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.590 kb on + strandat 104.650 kb on + strandat 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 105.297 kb on + strand, within MPMX19_06839at 105.298 kb on - strand, within MPMX19_06839at 105.397 kb on + strand, within MPMX19_06839at 105.397 kb on + strand, within MPMX19_06839at 105.398 kb on - strand, within MPMX19_06839at 105.398 kb on - strand, within MPMX19_06839at 105.398 kb on - strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.517 kb on + strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.518 kb on - strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.865 kb on + strand, within MPMX19_06839at 105.866 kb on - strand, within MPMX19_06839at 105.866 kb on - strand, within MPMX19_06839at 105.866 kb on - strand, within MPMX19_06839at 106.309 kb on - strand, within MPMX19_06840at 106.309 kb on - strand, within MPMX19_06840at 106.437 kb on + strand, within MPMX19_06840at 106.437 kb on + strand, within MPMX19_06840at 106.438 kb on - strand, within MPMX19_06840at 106.438 kb on - strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.536 kb on + strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.537 kb on - strand, within MPMX19_06840at 106.752 kb on + strand, within MPMX19_06840at 106.764 kb on + strand, within MPMX19_06840at 106.764 kb on + strand, within MPMX19_06840at 106.764 kb on + strand, within MPMX19_06840at 106.764 kb on + strand, within MPMX19_06840at 106.765 kb on - strand, within MPMX19_06840at 106.765 kb on - strand, within MPMX19_06840at 106.765 kb on - strand, within MPMX19_06840at 106.797 kb on + strand, within MPMX19_06840at 106.797 kb on + strand, within MPMX19_06840at 106.797 kb on + strand, within MPMX19_06840at 106.881 kb on + strand, within MPMX19_06840at 106.881 kb on + strand, within MPMX19_06840at 106.881 kb on + strand, within MPMX19_06840at 106.882 kb on - strand, within MPMX19_06840at 106.956 kb on + strandat 107.096 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
103,551 - MPMX19_06837 0.60 +0.9
103,601 + MPMX19_06837 0.64 -0.7
103,601 + MPMX19_06837 0.64 -1.2
103,601 + MPMX19_06837 0.64 -0.3
103,601 + MPMX19_06837 0.64 +1.2
103,602 - MPMX19_06837 0.64 +1.3
103,602 - MPMX19_06837 0.64 +0.5
103,697 + MPMX19_06837 0.71 +0.0
103,697 + MPMX19_06837 0.71 -2.1
103,697 + MPMX19_06837 0.71 -1.1
103,698 - MPMX19_06837 0.71 +1.0
103,698 - MPMX19_06837 0.71 -0.4
103,698 - MPMX19_06837 0.71 +0.3
103,698 - MPMX19_06837 0.71 +0.3
103,736 - MPMX19_06837 0.74 -0.2
103,794 - MPMX19_06837 0.78 +0.6
104,148 + +0.5
104,148 + -0.6
104,148 + +0.6
104,148 + -1.0
104,148 + -0.9
104,149 - +0.1
104,149 - +0.1
104,149 - -0.7
104,238 + MPMX19_06838 0.45 +0.2
104,239 - MPMX19_06838 0.45 -1.6
104,239 - MPMX19_06838 0.45 +0.0
104,394 - -0.6
104,394 - +1.0
104,397 + +0.2
104,397 + -0.5
104,397 + -0.7
104,397 + -0.1
104,397 + -0.2
104,397 + -0.7
104,398 - -1.0
104,414 - +0.4
104,421 + -0.0
104,421 + -0.6
104,421 + -1.4
104,421 + -1.4
104,421 + +0.6
104,422 - -0.0
104,422 - -0.2
104,422 - +0.9
104,422 - -1.0
104,590 + -1.1
104,650 + +0.5
104,713 + MPMX19_06839 0.13 -1.6
104,713 + MPMX19_06839 0.13 +0.3
104,713 + MPMX19_06839 0.13 -0.2
104,713 + MPMX19_06839 0.13 -0.5
104,713 + MPMX19_06839 0.13 +0.8
104,713 + MPMX19_06839 0.13 -0.2
104,713 + MPMX19_06839 0.13 -0.3
104,713 + MPMX19_06839 0.13 -0.1
104,714 - MPMX19_06839 0.13 -0.4
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 -1.6
104,714 - MPMX19_06839 0.13 +1.6
104,714 - MPMX19_06839 0.13 -0.8
104,714 - MPMX19_06839 0.13 -1.2
104,714 - MPMX19_06839 0.13 -1.0
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 -1.0
104,971 + MPMX19_06839 0.29 -1.8
104,971 + MPMX19_06839 0.29 -0.9
104,971 + MPMX19_06839 0.29 -0.2
104,971 + MPMX19_06839 0.29 +0.6
104,971 + MPMX19_06839 0.29 -0.5
104,971 + MPMX19_06839 0.29 +0.4
104,971 + MPMX19_06839 0.29 -1.2
104,971 + MPMX19_06839 0.29 +0.0
104,971 + MPMX19_06839 0.29 -0.2
104,972 - MPMX19_06839 0.29 -0.7
104,972 - MPMX19_06839 0.29 -1.2
104,972 - MPMX19_06839 0.29 +1.1
104,972 - MPMX19_06839 0.29 +0.1
104,972 - MPMX19_06839 0.29 -1.1
104,972 - MPMX19_06839 0.29 -0.8
104,972 - MPMX19_06839 0.29 -1.3
104,972 - MPMX19_06839 0.29 -2.1
105,297 + MPMX19_06839 0.48 +0.6
105,298 - MPMX19_06839 0.48 +1.2
105,397 + MPMX19_06839 0.54 -1.0
105,397 + MPMX19_06839 0.54 +0.6
105,398 - MPMX19_06839 0.54 +0.1
105,398 - MPMX19_06839 0.54 +0.4
105,398 - MPMX19_06839 0.54 +0.6
105,517 + MPMX19_06839 0.62 +0.1
105,517 + MPMX19_06839 0.62 -0.2
105,517 + MPMX19_06839 0.62 -1.6
105,517 + MPMX19_06839 0.62 +0.4
105,517 + MPMX19_06839 0.62 -3.9
105,517 + MPMX19_06839 0.62 -0.2
105,517 + MPMX19_06839 0.62 -1.2
105,517 + MPMX19_06839 0.62 +0.3
105,517 + MPMX19_06839 0.62 +0.8
105,517 + MPMX19_06839 0.62 +0.5
105,518 - MPMX19_06839 0.62 -0.5
105,518 - MPMX19_06839 0.62 -0.0
105,518 - MPMX19_06839 0.62 +1.3
105,518 - MPMX19_06839 0.62 +1.0
105,518 - MPMX19_06839 0.62 -0.8
105,518 - MPMX19_06839 0.62 -1.2
105,518 - MPMX19_06839 0.62 +1.8
105,518 - MPMX19_06839 0.62 +0.4
105,518 - MPMX19_06839 0.62 -1.1
105,865 + MPMX19_06839 0.83 -0.0
105,865 + MPMX19_06839 0.83 +1.0
105,865 + MPMX19_06839 0.83 -0.8
105,865 + MPMX19_06839 0.83 +1.5
105,865 + MPMX19_06839 0.83 -0.8
105,865 + MPMX19_06839 0.83 -1.2
105,865 + MPMX19_06839 0.83 -1.2
105,865 + MPMX19_06839 0.83 -1.6
105,866 - MPMX19_06839 0.83 -1.0
105,866 - MPMX19_06839 0.83 +0.2
105,866 - MPMX19_06839 0.83 -0.2
106,309 - MPMX19_06840 0.18 -0.1
106,309 - MPMX19_06840 0.18 -2.7
106,437 + MPMX19_06840 0.32 -0.7
106,437 + MPMX19_06840 0.32 +1.3
106,438 - MPMX19_06840 0.33 +0.9
106,438 - MPMX19_06840 0.33 +0.0
106,536 + MPMX19_06840 0.44 -0.2
106,536 + MPMX19_06840 0.44 +0.8
106,536 + MPMX19_06840 0.44 +0.0
106,536 + MPMX19_06840 0.44 -2.0
106,536 + MPMX19_06840 0.44 -0.7
106,536 + MPMX19_06840 0.44 -1.5
106,536 + MPMX19_06840 0.44 +0.7
106,536 + MPMX19_06840 0.44 +0.0
106,536 + MPMX19_06840 0.44 +0.0
106,536 + MPMX19_06840 0.44 -1.2
106,536 + MPMX19_06840 0.44 +0.6
106,536 + MPMX19_06840 0.44 -0.2
106,537 - MPMX19_06840 0.44 +0.4
106,537 - MPMX19_06840 0.44 -0.3
106,537 - MPMX19_06840 0.44 +1.3
106,537 - MPMX19_06840 0.44 -0.3
106,537 - MPMX19_06840 0.44 -1.3
106,537 - MPMX19_06840 0.44 +0.6
106,537 - MPMX19_06840 0.44 -0.3
106,537 - MPMX19_06840 0.44 -1.1
106,537 - MPMX19_06840 0.44 +0.9
106,537 - MPMX19_06840 0.44 -0.7
106,537 - MPMX19_06840 0.44 -0.4
106,537 - MPMX19_06840 0.44 -2.1
106,537 - MPMX19_06840 0.44 -1.4
106,537 - MPMX19_06840 0.44 +0.4
106,537 - MPMX19_06840 0.44 -1.4
106,537 - MPMX19_06840 0.44 +0.1
106,537 - MPMX19_06840 0.44 -0.1
106,537 - MPMX19_06840 0.44 -0.9
106,537 - MPMX19_06840 0.44 -0.7
106,537 - MPMX19_06840 0.44 -1.7
106,537 - MPMX19_06840 0.44 -0.9
106,537 - MPMX19_06840 0.44 -0.6
106,537 - MPMX19_06840 0.44 +0.1
106,537 - MPMX19_06840 0.44 -1.1
106,537 - MPMX19_06840 0.44 -0.3
106,537 - MPMX19_06840 0.44 -0.5
106,537 - MPMX19_06840 0.44 -0.4
106,537 - MPMX19_06840 0.44 +1.0
106,537 - MPMX19_06840 0.44 -0.7
106,537 - MPMX19_06840 0.44 -0.2
106,537 - MPMX19_06840 0.44 -0.6
106,752 + MPMX19_06840 0.68 -1.2
106,764 + MPMX19_06840 0.69 -0.2
106,764 + MPMX19_06840 0.69 -0.7
106,764 + MPMX19_06840 0.69 -2.4
106,764 + MPMX19_06840 0.69 -2.0
106,765 - MPMX19_06840 0.69 -0.6
106,765 - MPMX19_06840 0.69 -0.4
106,765 - MPMX19_06840 0.69 -0.5
106,797 + MPMX19_06840 0.73 -2.8
106,797 + MPMX19_06840 0.73 +0.6
106,797 + MPMX19_06840 0.73 +0.3
106,881 + MPMX19_06840 0.82 -0.3
106,881 + MPMX19_06840 0.82 -2.0
106,881 + MPMX19_06840 0.82 -0.9
106,882 - MPMX19_06840 0.82 -0.2
106,956 + -0.5
107,096 + -1.7

Or see this region's nucleotide sequence