Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06837

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06836 and MPMX19_06837 are separated by 41 nucleotidesMPMX19_06837 and MPMX19_06838 are separated by 48 nucleotidesMPMX19_06838 and MPMX19_06839 are separated by 148 nucleotides MPMX19_06836: MPMX19_06836 - Glutarate-semialdehyde dehydrogenase, at 101,184 to 102,677 _06836 MPMX19_06837: MPMX19_06837 - Putrescine--pyruvate aminotransferase, at 102,719 to 104,098 _06837 MPMX19_06838: MPMX19_06838 - hypothetical protein, at 104,147 to 104,350 _06838 MPMX19_06839: MPMX19_06839 - Glutathione import ATP-binding protein GsiA, at 104,499 to 106,148 _06839 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.111 kb on + strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.112 kb on - strand, within MPMX19_06836at 102.129 kb on + strand, within MPMX19_06836at 102.129 kb on + strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.130 kb on - strand, within MPMX19_06836at 102.327 kb on + strand, within MPMX19_06836at 102.327 kb on + strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.328 kb on - strand, within MPMX19_06836at 102.459 kb on + strand, within MPMX19_06836at 102.474 kb on + strand, within MPMX19_06836at 102.528 kb on + strandat 102.654 kb on + strandat 102.654 kb on + strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.655 kb on - strandat 102.845 kb on + strandat 102.845 kb on + strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.846 kb on - strandat 102.896 kb on + strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.897 kb on - strand, within MPMX19_06837at 102.914 kb on + strand, within MPMX19_06837at 102.968 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.971 kb on + strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.972 kb on - strand, within MPMX19_06837at 102.980 kb on + strand, within MPMX19_06837at 102.980 kb on + strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 102.981 kb on - strand, within MPMX19_06837at 103.115 kb on + strand, within MPMX19_06837at 103.115 kb on + strand, within MPMX19_06837at 103.116 kb on - strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.118 kb on + strand, within MPMX19_06837at 103.119 kb on - strand, within MPMX19_06837at 103.175 kb on + strand, within MPMX19_06837at 103.176 kb on - strand, within MPMX19_06837at 103.277 kb on + strand, within MPMX19_06837at 103.277 kb on + strand, within MPMX19_06837at 103.278 kb on - strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.280 kb on + strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.281 kb on - strand, within MPMX19_06837at 103.551 kb on - strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.601 kb on + strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837at 103.602 kb on - strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.697 kb on + strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.698 kb on - strand, within MPMX19_06837at 103.736 kb on - strand, within MPMX19_06837at 103.794 kb on - strand, within MPMX19_06837at 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.148 kb on + strandat 104.149 kb on - strandat 104.149 kb on - strandat 104.149 kb on - strandat 104.238 kb on + strand, within MPMX19_06838at 104.239 kb on - strand, within MPMX19_06838at 104.239 kb on - strand, within MPMX19_06838at 104.394 kb on - strandat 104.394 kb on - strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.397 kb on + strandat 104.398 kb on - strandat 104.414 kb on - strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.421 kb on + strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.422 kb on - strandat 104.590 kb on + strandat 104.650 kb on + strandat 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.713 kb on + strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.714 kb on - strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.971 kb on + strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839at 104.972 kb on - strand, within MPMX19_06839

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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102,111 + MPMX19_06836 0.62 -0.6
102,111 + MPMX19_06836 0.62 +0.6
102,111 + MPMX19_06836 0.62 -0.7
102,111 + MPMX19_06836 0.62 +0.0
102,111 + MPMX19_06836 0.62 -0.3
102,111 + MPMX19_06836 0.62 -0.9
102,111 + MPMX19_06836 0.62 -0.2
102,111 + MPMX19_06836 0.62 -0.2
102,111 + MPMX19_06836 0.62 -0.4
102,111 + MPMX19_06836 0.62 -0.4
102,111 + MPMX19_06836 0.62 -0.4
102,112 - MPMX19_06836 0.62 -1.3
102,112 - MPMX19_06836 0.62 -0.0
102,112 - MPMX19_06836 0.62 -0.8
102,112 - MPMX19_06836 0.62 -0.5
102,112 - MPMX19_06836 0.62 +0.8
102,112 - MPMX19_06836 0.62 -1.2
102,112 - MPMX19_06836 0.62 +0.1
102,112 - MPMX19_06836 0.62 +0.5
102,112 - MPMX19_06836 0.62 -1.4
102,112 - MPMX19_06836 0.62 -0.4
102,112 - MPMX19_06836 0.62 -0.8
102,112 - MPMX19_06836 0.62 +0.3
102,112 - MPMX19_06836 0.62 -0.4
102,112 - MPMX19_06836 0.62 -1.9
102,112 - MPMX19_06836 0.62 -1.1
102,129 + MPMX19_06836 0.63 +0.0
102,129 + MPMX19_06836 0.63 -1.2
102,130 - MPMX19_06836 0.63 +0.1
102,130 - MPMX19_06836 0.63 +2.2
102,130 - MPMX19_06836 0.63 -1.0
102,130 - MPMX19_06836 0.63 -0.1
102,327 + MPMX19_06836 0.77 -1.1
102,327 + MPMX19_06836 0.77 -1.3
102,328 - MPMX19_06836 0.77 +0.5
102,328 - MPMX19_06836 0.77 +0.2
102,328 - MPMX19_06836 0.77 -0.6
102,459 + MPMX19_06836 0.85 -0.7
102,474 + MPMX19_06836 0.86 -0.1
102,528 + -1.4
102,654 + +0.2
102,654 + +0.7
102,655 - +0.4
102,655 - -0.3
102,655 - -0.6
102,655 - -0.7
102,655 - +0.1
102,655 - -1.3
102,655 - -0.7
102,655 - -0.2
102,655 - +0.4
102,655 - +0.3
102,655 - -2.6
102,845 + -1.2
102,845 + -0.1
102,846 - +0.3
102,846 - -1.6
102,846 - -2.3
102,846 - +0.6
102,846 - +0.9
102,896 + MPMX19_06837 0.13 +1.0
102,897 - MPMX19_06837 0.13 +1.6
102,897 - MPMX19_06837 0.13 +0.7
102,897 - MPMX19_06837 0.13 +0.4
102,897 - MPMX19_06837 0.13 -0.3
102,897 - MPMX19_06837 0.13 -1.7
102,897 - MPMX19_06837 0.13 +0.4
102,914 + MPMX19_06837 0.14 -0.4
102,968 + MPMX19_06837 0.18 +0.8
102,971 + MPMX19_06837 0.18 +0.3
102,971 + MPMX19_06837 0.18 +0.7
102,971 + MPMX19_06837 0.18 -0.8
102,971 + MPMX19_06837 0.18 -2.7
102,971 + MPMX19_06837 0.18 -0.1
102,972 - MPMX19_06837 0.18 -0.9
102,972 - MPMX19_06837 0.18 +2.3
102,972 - MPMX19_06837 0.18 +0.0
102,972 - MPMX19_06837 0.18 +0.4
102,980 + MPMX19_06837 0.19 -2.2
102,980 + MPMX19_06837 0.19 +0.8
102,981 - MPMX19_06837 0.19 +0.4
102,981 - MPMX19_06837 0.19 -0.4
102,981 - MPMX19_06837 0.19 +0.9
103,115 + MPMX19_06837 0.29 +0.5
103,115 + MPMX19_06837 0.29 +0.6
103,116 - MPMX19_06837 0.29 -0.6
103,118 + MPMX19_06837 0.29 -0.9
103,118 + MPMX19_06837 0.29 +0.8
103,118 + MPMX19_06837 0.29 -0.9
103,118 + MPMX19_06837 0.29 +0.9
103,118 + MPMX19_06837 0.29 -0.1
103,119 - MPMX19_06837 0.29 +0.4
103,175 + MPMX19_06837 0.33 -0.4
103,176 - MPMX19_06837 0.33 -0.6
103,277 + MPMX19_06837 0.40 +0.2
103,277 + MPMX19_06837 0.40 +0.1
103,278 - MPMX19_06837 0.41 +0.1
103,280 + MPMX19_06837 0.41 -0.9
103,280 + MPMX19_06837 0.41 -0.7
103,280 + MPMX19_06837 0.41 -1.6
103,280 + MPMX19_06837 0.41 -1.0
103,280 + MPMX19_06837 0.41 +1.0
103,281 - MPMX19_06837 0.41 -0.8
103,281 - MPMX19_06837 0.41 -0.5
103,281 - MPMX19_06837 0.41 +0.8
103,281 - MPMX19_06837 0.41 -0.4
103,551 - MPMX19_06837 0.60 +0.9
103,601 + MPMX19_06837 0.64 -0.7
103,601 + MPMX19_06837 0.64 -1.2
103,601 + MPMX19_06837 0.64 -0.3
103,601 + MPMX19_06837 0.64 +1.2
103,602 - MPMX19_06837 0.64 +1.3
103,602 - MPMX19_06837 0.64 +0.5
103,697 + MPMX19_06837 0.71 +0.0
103,697 + MPMX19_06837 0.71 -2.1
103,697 + MPMX19_06837 0.71 -1.1
103,698 - MPMX19_06837 0.71 +1.0
103,698 - MPMX19_06837 0.71 -0.4
103,698 - MPMX19_06837 0.71 +0.3
103,698 - MPMX19_06837 0.71 +0.3
103,736 - MPMX19_06837 0.74 -0.2
103,794 - MPMX19_06837 0.78 +0.6
104,148 + +0.5
104,148 + -0.6
104,148 + +0.6
104,148 + -1.0
104,148 + -0.9
104,149 - +0.1
104,149 - +0.1
104,149 - -0.7
104,238 + MPMX19_06838 0.45 +0.2
104,239 - MPMX19_06838 0.45 -1.6
104,239 - MPMX19_06838 0.45 +0.0
104,394 - -0.6
104,394 - +1.0
104,397 + +0.2
104,397 + -0.5
104,397 + -0.7
104,397 + -0.1
104,397 + -0.2
104,397 + -0.7
104,398 - -1.0
104,414 - +0.4
104,421 + -0.0
104,421 + -0.6
104,421 + -1.4
104,421 + -1.4
104,421 + +0.6
104,422 - -0.0
104,422 - -0.2
104,422 - +0.9
104,422 - -1.0
104,590 + -1.1
104,650 + +0.5
104,713 + MPMX19_06839 0.13 -1.6
104,713 + MPMX19_06839 0.13 +0.3
104,713 + MPMX19_06839 0.13 -0.2
104,713 + MPMX19_06839 0.13 -0.5
104,713 + MPMX19_06839 0.13 +0.8
104,713 + MPMX19_06839 0.13 -0.2
104,713 + MPMX19_06839 0.13 -0.3
104,713 + MPMX19_06839 0.13 -0.1
104,714 - MPMX19_06839 0.13 -0.4
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 -1.6
104,714 - MPMX19_06839 0.13 +1.6
104,714 - MPMX19_06839 0.13 -0.8
104,714 - MPMX19_06839 0.13 -1.2
104,714 - MPMX19_06839 0.13 -1.0
104,714 - MPMX19_06839 0.13 +0.0
104,714 - MPMX19_06839 0.13 -1.0
104,971 + MPMX19_06839 0.29 -1.8
104,971 + MPMX19_06839 0.29 -0.9
104,971 + MPMX19_06839 0.29 -0.2
104,971 + MPMX19_06839 0.29 +0.6
104,971 + MPMX19_06839 0.29 -0.5
104,971 + MPMX19_06839 0.29 +0.4
104,971 + MPMX19_06839 0.29 -1.2
104,971 + MPMX19_06839 0.29 +0.0
104,971 + MPMX19_06839 0.29 -0.2
104,972 - MPMX19_06839 0.29 -0.7
104,972 - MPMX19_06839 0.29 -1.2
104,972 - MPMX19_06839 0.29 +1.1
104,972 - MPMX19_06839 0.29 +0.1
104,972 - MPMX19_06839 0.29 -1.1
104,972 - MPMX19_06839 0.29 -0.8
104,972 - MPMX19_06839 0.29 -1.3
104,972 - MPMX19_06839 0.29 -2.1

Or see this region's nucleotide sequence