Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06825

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06824 and MPMX19_06825 are separated by 257 nucleotidesMPMX19_06825 and MPMX19_06826 are separated by 137 nucleotides MPMX19_06824: MPMX19_06824 - Flavin-dependent trigonelline monooxygenase, reductase component, at 89,315 to 90,337 _06824 MPMX19_06825: MPMX19_06825 - hypothetical protein, at 90,595 to 91,443 _06825 MPMX19_06826: MPMX19_06826 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 91,581 to 92,615 _06826 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 89.607 kb on + strand, within MPMX19_06824at 90.119 kb on - strand, within MPMX19_06824at 90.256 kb on + strandat 90.256 kb on + strandat 90.257 kb on - strandat 90.257 kb on - strandat 90.369 kb on + strandat 90.370 kb on - strandat 90.402 kb on - strandat 90.770 kb on + strand, within MPMX19_06825at 90.770 kb on + strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.191 kb on - strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.327 kb on - strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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89,607 + MPMX19_06824 0.29 -0.1
90,119 - MPMX19_06824 0.79 +0.9
90,256 + -0.8
90,256 + +0.0
90,257 - -0.6
90,257 - +0.9
90,369 + -0.7
90,370 - -1.7
90,402 - -1.6
90,770 + MPMX19_06825 0.21 -1.0
90,770 + MPMX19_06825 0.21 -1.4
90,771 - MPMX19_06825 0.21 +0.8
90,771 - MPMX19_06825 0.21 -0.4
90,771 - MPMX19_06825 0.21 +0.2
90,863 + MPMX19_06825 0.32 -1.2
90,863 + MPMX19_06825 0.32 -0.3
90,863 + MPMX19_06825 0.32 +0.6
90,864 - MPMX19_06825 0.32 +0.3
90,864 - MPMX19_06825 0.32 -0.6
90,864 - MPMX19_06825 0.32 +1.1
91,025 + MPMX19_06825 0.51 -1.4
91,025 + MPMX19_06825 0.51 -1.0
91,025 + MPMX19_06825 0.51 +0.6
91,025 + MPMX19_06825 0.51 +1.6
91,025 + MPMX19_06825 0.51 -0.2
91,026 - MPMX19_06825 0.51 +0.6
91,026 - MPMX19_06825 0.51 +0.5
91,026 - MPMX19_06825 0.51 -1.7
91,026 - MPMX19_06825 0.51 -0.3
91,026 - MPMX19_06825 0.51 -0.3
91,026 - MPMX19_06825 0.51 +1.3
91,026 - MPMX19_06825 0.51 -0.1
91,097 + MPMX19_06825 0.59 -0.2
91,097 + MPMX19_06825 0.59 -0.4
91,097 + MPMX19_06825 0.59 -0.3
91,097 + MPMX19_06825 0.59 -0.9
91,097 + MPMX19_06825 0.59 +0.0
91,098 - MPMX19_06825 0.59 -0.7
91,098 - MPMX19_06825 0.59 +0.9
91,098 - MPMX19_06825 0.59 -3.2
91,191 - MPMX19_06825 0.70 -1.0
91,298 + MPMX19_06825 0.83 +0.4
91,298 + MPMX19_06825 0.83 -0.5
91,299 - MPMX19_06825 0.83 +0.4
91,299 - MPMX19_06825 0.83 -0.6
91,299 - MPMX19_06825 0.83 -0.1
92,020 + MPMX19_06826 0.42 -0.2
92,020 + MPMX19_06826 0.42 +0.2
92,020 + MPMX19_06826 0.42 -0.5
92,020 + MPMX19_06826 0.42 +0.0
92,020 + MPMX19_06826 0.42 +0.5
92,020 + MPMX19_06826 0.42 -0.6
92,020 + MPMX19_06826 0.42 -0.7
92,021 - MPMX19_06826 0.43 +0.6
92,021 - MPMX19_06826 0.43 -1.0
92,021 - MPMX19_06826 0.43 -0.6
92,021 - MPMX19_06826 0.43 -1.0
92,059 + MPMX19_06826 0.46 -1.6
92,059 + MPMX19_06826 0.46 -0.3
92,059 + MPMX19_06826 0.46 +0.1
92,059 + MPMX19_06826 0.46 -0.6
92,059 + MPMX19_06826 0.46 -0.8
92,060 - MPMX19_06826 0.46 -0.6
92,060 - MPMX19_06826 0.46 -0.4
92,060 - MPMX19_06826 0.46 +0.8
92,218 + MPMX19_06826 0.62 -1.4
92,218 + MPMX19_06826 0.62 +0.6
92,218 + MPMX19_06826 0.62 -0.4
92,218 + MPMX19_06826 0.62 -2.4
92,218 + MPMX19_06826 0.62 +0.2
92,218 + MPMX19_06826 0.62 +1.2
92,327 - MPMX19_06826 0.72 +0.9
92,416 + MPMX19_06826 0.81 +0.2
92,416 + MPMX19_06826 0.81 -0.2
92,416 + MPMX19_06826 0.81 -0.6
92,417 - MPMX19_06826 0.81 -1.0
92,417 - MPMX19_06826 0.81 -1.6
92,417 - MPMX19_06826 0.81 -0.5
92,417 - MPMX19_06826 0.81 -0.9
92,417 - MPMX19_06826 0.81 -0.3

Or see this region's nucleotide sequence