Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06817

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06816 and MPMX19_06817 are separated by 67 nucleotidesMPMX19_06817 and MPMX19_06818 overlap by 8 nucleotides MPMX19_06816: MPMX19_06816 - Glycine betaine-binding periplasmic protein OusX, at 81,660 to 82,697 _06816 MPMX19_06817: MPMX19_06817 - Glycine betaine/choline transport system permease protein OusW, at 82,765 to 83,727 _06817 MPMX19_06818: MPMX19_06818 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 83,720 to 84,916 _06818 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 82.063 kb on + strand, within MPMX19_06816at 82.063 kb on + strand, within MPMX19_06816at 82.064 kb on - strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.505 kb on - strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.579 kb on + strand, within MPMX19_06816at 82.579 kb on + strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 83.300 kb on + strand, within MPMX19_06817at 83.300 kb on + strand, within MPMX19_06817at 83.301 kb on - strand, within MPMX19_06817at 83.609 kb on + strand, within MPMX19_06817at 83.609 kb on + strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 84.138 kb on + strand, within MPMX19_06818at 84.139 kb on - strand, within MPMX19_06818at 84.139 kb on - strand, within MPMX19_06818at 84.139 kb on - strand, within MPMX19_06818at 84.435 kb on + strand, within MPMX19_06818at 84.435 kb on + strand, within MPMX19_06818at 84.436 kb on - strand, within MPMX19_06818

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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82,063 + MPMX19_06816 0.39 -2.2
82,063 + MPMX19_06816 0.39 +1.9
82,064 - MPMX19_06816 0.39 -0.3
82,123 + MPMX19_06816 0.45 -1.2
82,123 + MPMX19_06816 0.45 -0.5
82,123 + MPMX19_06816 0.45 -0.2
82,123 + MPMX19_06816 0.45 -0.9
82,123 + MPMX19_06816 0.45 -1.2
82,123 + MPMX19_06816 0.45 -0.8
82,124 - MPMX19_06816 0.45 -2.1
82,124 - MPMX19_06816 0.45 -1.1
82,124 - MPMX19_06816 0.45 +0.9
82,505 - MPMX19_06816 0.81 +0.2
82,549 + MPMX19_06816 0.86 +0.3
82,549 + MPMX19_06816 0.86 -0.5
82,549 + MPMX19_06816 0.86 -0.7
82,549 + MPMX19_06816 0.86 -0.6
82,549 + MPMX19_06816 0.86 -0.7
82,549 + MPMX19_06816 0.86 -0.1
82,549 + MPMX19_06816 0.86 -0.9
82,549 + MPMX19_06816 0.86 +0.0
82,549 + MPMX19_06816 0.86 -1.3
82,549 + MPMX19_06816 0.86 -0.6
82,549 + MPMX19_06816 0.86 +1.0
82,549 + MPMX19_06816 0.86 -0.2
82,549 + MPMX19_06816 0.86 +0.3
82,550 - MPMX19_06816 0.86 +1.6
82,550 - MPMX19_06816 0.86 -0.2
82,550 - MPMX19_06816 0.86 -0.4
82,550 - MPMX19_06816 0.86 -0.1
82,550 - MPMX19_06816 0.86 -2.2
82,550 - MPMX19_06816 0.86 -0.6
82,550 - MPMX19_06816 0.86 -0.5
82,579 + MPMX19_06816 0.89 -1.0
82,579 + MPMX19_06816 0.89 -0.2
82,580 - MPMX19_06816 0.89 -0.6
82,580 - MPMX19_06816 0.89 +0.0
82,580 - MPMX19_06816 0.89 +0.0
82,580 - MPMX19_06816 0.89 -0.4
83,300 + MPMX19_06817 0.56 -0.5
83,300 + MPMX19_06817 0.56 +1.0
83,301 - MPMX19_06817 0.56 -1.2
83,609 + MPMX19_06817 0.88 -1.4
83,609 + MPMX19_06817 0.88 +0.3
83,610 - MPMX19_06817 0.88 -0.2
83,610 - MPMX19_06817 0.88 +0.2
83,610 - MPMX19_06817 0.88 -1.1
83,610 - MPMX19_06817 0.88 -0.6
83,610 - MPMX19_06817 0.88 +0.6
84,138 + MPMX19_06818 0.35 +0.1
84,139 - MPMX19_06818 0.35 -0.5
84,139 - MPMX19_06818 0.35 -0.1
84,139 - MPMX19_06818 0.35 -1.0
84,435 + MPMX19_06818 0.60 +0.1
84,435 + MPMX19_06818 0.60 -0.6
84,436 - MPMX19_06818 0.60 +0.5

Or see this region's nucleotide sequence