Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06813 and MPMX19_06814 overlap by 1 nucleotides MPMX19_06814 and MPMX19_06815 are separated by 62 nucleotides MPMX19_06815 and MPMX19_06816 are separated by 98 nucleotides
MPMX19_06813: MPMX19_06813 - putative MFS-type transporter YcaD, at 78,678 to 79,955
_06813
MPMX19_06814: MPMX19_06814 - Glyoxylate/hydroxypyruvate reductase A, at 79,955 to 80,902
_06814
MPMX19_06815: MPMX19_06815 - hypothetical protein, at 80,965 to 81,561
_06815
MPMX19_06816: MPMX19_06816 - Glycine betaine-binding periplasmic protein OusX, at 81,660 to 82,697
_06816
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.054 kb on + strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.055 kb on - strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.303 kb on + strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.304 kb on - strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.561 kb on + strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.562 kb on - strand, within MPMX19_06813 at 79.744 kb on + strand, within MPMX19_06813 at 79.744 kb on + strand, within MPMX19_06813 at 79.745 kb on - strand, within MPMX19_06813 at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.908 kb on + strand at 80.910 kb on + strand at 80.910 kb on + strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 80.911 kb on - strand at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.320 kb on + strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815 at 81.321 kb on - strand, within MPMX19_06815
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 79,054 + MPMX19_06813 0.29 -1.0 79,054 + MPMX19_06813 0.29 +0.3 79,054 + MPMX19_06813 0.29 -0.7 79,054 + MPMX19_06813 0.29 -1.6 79,054 + MPMX19_06813 0.29 -0.4 79,054 + MPMX19_06813 0.29 -1.9 79,054 + MPMX19_06813 0.29 +1.2 79,054 + MPMX19_06813 0.29 -0.7 79,054 + MPMX19_06813 0.29 -0.1 79,054 + MPMX19_06813 0.29 +0.6 79,054 + MPMX19_06813 0.29 -1.4 79,055 - MPMX19_06813 0.29 +0.1 79,055 - MPMX19_06813 0.29 -0.1 79,055 - MPMX19_06813 0.29 +0.0 79,055 - MPMX19_06813 0.29 +0.3 79,055 - MPMX19_06813 0.29 -0.3 79,055 - MPMX19_06813 0.29 -1.4 79,303 + MPMX19_06813 0.49 +1.3 79,303 + MPMX19_06813 0.49 -0.9 79,303 + MPMX19_06813 0.49 +0.5 79,304 - MPMX19_06813 0.49 -1.6 79,304 - MPMX19_06813 0.49 +0.0 79,304 - MPMX19_06813 0.49 +0.3 79,304 - MPMX19_06813 0.49 -2.4 79,561 + MPMX19_06813 0.69 +0.0 79,561 + MPMX19_06813 0.69 -1.4 79,561 + MPMX19_06813 0.69 -1.3 79,561 + MPMX19_06813 0.69 -1.0 79,561 + MPMX19_06813 0.69 -0.9 79,561 + MPMX19_06813 0.69 -0.0 79,561 + MPMX19_06813 0.69 +0.1 79,561 + MPMX19_06813 0.69 -0.6 79,562 - MPMX19_06813 0.69 +0.4 79,562 - MPMX19_06813 0.69 -0.4 79,562 - MPMX19_06813 0.69 -1.4 79,562 - MPMX19_06813 0.69 -0.8 79,744 + MPMX19_06813 0.83 +0.6 79,744 + MPMX19_06813 0.83 +0.1 79,745 - MPMX19_06813 0.83 -1.2 80,908 + -0.6 80,908 + -1.2 80,908 + -0.0 80,908 + -0.7 80,910 + -0.9 80,910 + +0.3 80,911 - +0.9 80,911 - -1.6 80,911 - -0.2 80,911 - +0.7 81,320 + MPMX19_06815 0.59 -0.5 81,320 + MPMX19_06815 0.59 +0.5 81,320 + MPMX19_06815 0.59 +0.1 81,321 - MPMX19_06815 0.60 +0.4 81,321 - MPMX19_06815 0.60 -0.7 81,321 - MPMX19_06815 0.60 -0.1 81,321 - MPMX19_06815 0.60 +0.5
Or see this region's nucleotide sequence