Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06777

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06775 and MPMX19_06776 are separated by 138 nucleotidesMPMX19_06776 and MPMX19_06777 are separated by 210 nucleotidesMPMX19_06777 and MPMX19_06778 are separated by 16 nucleotides MPMX19_06775: MPMX19_06775 - Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase, at 40,668 to 41,561 _06775 MPMX19_06776: MPMX19_06776 - hypothetical protein, at 41,700 to 42,107 _06776 MPMX19_06777: MPMX19_06777 - hypothetical protein, at 42,318 to 43,022 _06777 MPMX19_06778: MPMX19_06778 - HTH-type transcriptional regulator YhaJ, at 43,039 to 43,968 _06778 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.319 kb on + strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.320 kb on - strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.331 kb on + strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.332 kb on - strand, within MPMX19_06775at 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.496 kb on + strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.497 kb on - strandat 41.627 kb on + strandat 41.638 kb on + strandat 41.639 kb on - strandat 41.639 kb on - strandat 41.639 kb on - strandat 41.937 kb on - strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 41.965 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.028 kb on + strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.029 kb on - strand, within MPMX19_06776at 42.147 kb on + strandat 42.482 kb on + strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.696 kb on + strand, within MPMX19_06777at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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41,319 + MPMX19_06775 0.73 +1.6
41,319 + MPMX19_06775 0.73 -1.1
41,319 + MPMX19_06775 0.73 -1.2
41,320 - MPMX19_06775 0.73 -0.1
41,320 - MPMX19_06775 0.73 -0.2
41,320 - MPMX19_06775 0.73 +0.1
41,320 - MPMX19_06775 0.73 +0.6
41,320 - MPMX19_06775 0.73 -1.9
41,331 + MPMX19_06775 0.74 -0.4
41,331 + MPMX19_06775 0.74 -0.9
41,331 + MPMX19_06775 0.74 -0.1
41,331 + MPMX19_06775 0.74 -0.7
41,331 + MPMX19_06775 0.74 -0.7
41,331 + MPMX19_06775 0.74 -0.5
41,331 + MPMX19_06775 0.74 -0.2
41,331 + MPMX19_06775 0.74 -0.9
41,331 + MPMX19_06775 0.74 -1.2
41,331 + MPMX19_06775 0.74 -0.7
41,331 + MPMX19_06775 0.74 +0.9
41,331 + MPMX19_06775 0.74 -0.5
41,331 + MPMX19_06775 0.74 -0.1
41,331 + MPMX19_06775 0.74 +0.4
41,331 + MPMX19_06775 0.74 -0.3
41,332 - MPMX19_06775 0.74 +1.0
41,332 - MPMX19_06775 0.74 -1.3
41,332 - MPMX19_06775 0.74 +0.2
41,332 - MPMX19_06775 0.74 -0.6
41,332 - MPMX19_06775 0.74 -0.2
41,332 - MPMX19_06775 0.74 -1.1
41,332 - MPMX19_06775 0.74 -0.2
41,332 - MPMX19_06775 0.74 +0.8
41,332 - MPMX19_06775 0.74 +0.5
41,332 - MPMX19_06775 0.74 -1.0
41,332 - MPMX19_06775 0.74 +0.0
41,332 - MPMX19_06775 0.74 -1.0
41,332 - MPMX19_06775 0.74 +0.2
41,332 - MPMX19_06775 0.74 -1.0
41,496 + -0.4
41,496 + +0.9
41,496 + -1.1
41,496 + -1.5
41,496 + +0.2
41,496 + -0.0
41,496 + -1.4
41,497 - +0.5
41,497 - +0.6
41,497 - +0.3
41,627 + +0.2
41,638 + -0.5
41,639 - -2.8
41,639 - +0.6
41,639 - -0.3
41,937 - MPMX19_06776 0.58 +0.2
41,965 + MPMX19_06776 0.65 -0.9
41,965 + MPMX19_06776 0.65 -1.7
41,965 + MPMX19_06776 0.65 +0.2
42,028 + MPMX19_06776 0.80 -1.5
42,028 + MPMX19_06776 0.80 +0.6
42,028 + MPMX19_06776 0.80 -1.0
42,028 + MPMX19_06776 0.80 +0.4
42,028 + MPMX19_06776 0.80 +0.0
42,028 + MPMX19_06776 0.80 -0.7
42,028 + MPMX19_06776 0.80 +0.1
42,029 - MPMX19_06776 0.81 -2.0
42,029 - MPMX19_06776 0.81 +1.3
42,029 - MPMX19_06776 0.81 -0.8
42,029 - MPMX19_06776 0.81 +0.9
42,147 + -0.5
42,482 + MPMX19_06777 0.23 -0.6
42,483 - MPMX19_06777 0.23 -1.6
42,483 - MPMX19_06777 0.23 -1.3
42,696 + MPMX19_06777 0.54 -1.3
43,160 + MPMX19_06778 0.13 -0.7
43,160 + MPMX19_06778 0.13 +0.2
43,160 + MPMX19_06778 0.13 -1.4
43,160 + MPMX19_06778 0.13 -1.1
43,160 + MPMX19_06778 0.13 -1.7
43,160 + MPMX19_06778 0.13 -0.5
43,161 - MPMX19_06778 0.13 -0.1
43,161 - MPMX19_06778 0.13 +0.4
43,161 - MPMX19_06778 0.13 -0.1
43,161 - MPMX19_06778 0.13 -1.2
43,161 - MPMX19_06778 0.13 +1.0
43,850 + MPMX19_06778 0.87 -1.2
43,850 + MPMX19_06778 0.87 +0.0
43,850 + MPMX19_06778 0.87 -0.4
43,851 - MPMX19_06778 0.87 +0.0
43,851 - MPMX19_06778 0.87 +0.3
43,851 - MPMX19_06778 0.87 -0.1

Or see this region's nucleotide sequence