Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06767

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06766 and MPMX19_06767 overlap by 4 nucleotidesMPMX19_06767 and MPMX19_06768 are separated by 80 nucleotides MPMX19_06766: MPMX19_06766 - Bicarbonate transport ATP-binding protein CmpC, at 32,255 to 33,187 _06766 MPMX19_06767: MPMX19_06767 - hypothetical protein, at 33,184 to 34,701 _06767 MPMX19_06768: MPMX19_06768 - hypothetical protein, at 34,782 to 35,804 _06768 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 32.265 kb on + strandat 32.265 kb on + strandat 32.265 kb on + strandat 32.266 kb on - strandat 32.435 kb on + strand, within MPMX19_06766at 33.262 kb on + strandat 33.262 kb on + strandat 33.263 kb on - strandat 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.479 kb on - strand, within MPMX19_06767at 33.479 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.565 kb on + strand, within MPMX19_06767at 33.566 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.736 kb on + strand, within MPMX19_06767at 33.737 kb on - strand, within MPMX19_06767at 33.794 kb on - strand, within MPMX19_06767at 33.811 kb on + strand, within MPMX19_06767at 33.812 kb on - strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767at 34.252 kb on + strand, within MPMX19_06767at 34.252 kb on + strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.253 kb on - strand, within MPMX19_06767at 34.308 kb on + strand, within MPMX19_06767at 34.903 kb on - strand, within MPMX19_06768at 34.917 kb on + strand, within MPMX19_06768at 35.034 kb on + strand, within MPMX19_06768at 35.035 kb on - strand, within MPMX19_06768at 35.035 kb on - strand, within MPMX19_06768at 35.116 kb on - strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.277 kb on + strand, within MPMX19_06768at 35.278 kb on - strand, within MPMX19_06768

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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32,265 + -0.3
32,265 + +0.1
32,265 + +0.7
32,266 - +1.3
32,435 + MPMX19_06766 0.19 +0.0
33,262 + -1.0
33,262 + +0.0
33,263 - +0.6
33,475 + MPMX19_06767 0.19 +1.1
33,475 + MPMX19_06767 0.19 -2.0
33,475 + MPMX19_06767 0.19 -0.1
33,475 + MPMX19_06767 0.19 -2.6
33,476 - MPMX19_06767 0.19 -0.6
33,476 - MPMX19_06767 0.19 -0.1
33,476 - MPMX19_06767 0.19 -0.3
33,476 - MPMX19_06767 0.19 +0.4
33,476 - MPMX19_06767 0.19 +0.9
33,476 - MPMX19_06767 0.19 -1.2
33,478 + MPMX19_06767 0.19 +0.0
33,478 + MPMX19_06767 0.19 -1.9
33,478 + MPMX19_06767 0.19 -0.8
33,478 + MPMX19_06767 0.19 +0.6
33,479 - MPMX19_06767 0.19 +0.2
33,479 - MPMX19_06767 0.19 +0.9
33,503 - MPMX19_06767 0.21 -0.4
33,503 - MPMX19_06767 0.21 +0.4
33,503 - MPMX19_06767 0.21 -0.2
33,565 + MPMX19_06767 0.25 -0.2
33,566 - MPMX19_06767 0.25 -0.6
33,647 - MPMX19_06767 0.31 +0.6
33,647 - MPMX19_06767 0.31 +0.6
33,647 - MPMX19_06767 0.31 +0.9
33,736 + MPMX19_06767 0.36 +1.1
33,737 - MPMX19_06767 0.36 -1.2
33,794 - MPMX19_06767 0.40 +1.4
33,811 + MPMX19_06767 0.41 +0.7
33,812 - MPMX19_06767 0.41 +0.4
33,838 + MPMX19_06767 0.43 -0.6
33,838 + MPMX19_06767 0.43 +0.3
33,838 + MPMX19_06767 0.43 +0.0
33,838 + MPMX19_06767 0.43 +0.6
33,839 - MPMX19_06767 0.43 +0.3
33,839 - MPMX19_06767 0.43 -0.3
34,252 + MPMX19_06767 0.70 -1.4
34,252 + MPMX19_06767 0.70 -2.0
34,253 - MPMX19_06767 0.70 +0.8
34,253 - MPMX19_06767 0.70 -0.7
34,253 - MPMX19_06767 0.70 +1.6
34,253 - MPMX19_06767 0.70 -0.6
34,253 - MPMX19_06767 0.70 -0.8
34,308 + MPMX19_06767 0.74 +0.0
34,903 - MPMX19_06768 0.12 -0.4
34,917 + MPMX19_06768 0.13 -2.0
35,034 + MPMX19_06768 0.25 -0.2
35,035 - MPMX19_06768 0.25 -0.3
35,035 - MPMX19_06768 0.25 -0.2
35,116 - MPMX19_06768 0.33 -0.2
35,277 + MPMX19_06768 0.48 +1.3
35,277 + MPMX19_06768 0.48 +0.1
35,277 + MPMX19_06768 0.48 -0.8
35,278 - MPMX19_06768 0.48 -1.0

Or see this region's nucleotide sequence