Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06763

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06761 and MPMX19_06762 are separated by 120 nucleotidesMPMX19_06762 and MPMX19_06763 are separated by 88 nucleotidesMPMX19_06763 and MPMX19_06764 are separated by 124 nucleotidesMPMX19_06764 and MPMX19_06765 are separated by 41 nucleotides MPMX19_06761: MPMX19_06761 - HTH-type transcriptional regulator TauR, at 27,121 to 28,596 _06761 MPMX19_06762: MPMX19_06762 - Peptide deformylase, at 28,717 to 29,253 _06762 MPMX19_06763: MPMX19_06763 - hypothetical protein, at 29,342 to 30,259 _06763 MPMX19_06764: MPMX19_06764 - hypothetical protein, at 30,384 to 31,058 _06764 MPMX19_06765: MPMX19_06765 - Hydrogen peroxide-inducible genes activator, at 31,100 to 32,032 _06765 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.480 kb on - strandat 28.513 kb on + strandat 28.566 kb on - strandat 28.566 kb on - strandat 28.649 kb on + strandat 28.649 kb on + strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.805 kb on + strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.535 kb on + strand, within MPMX19_06763at 29.535 kb on + strand, within MPMX19_06763at 29.572 kb on - strand, within MPMX19_06763at 29.709 kb on + strand, within MPMX19_06763at 29.710 kb on - strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.742 kb on + strand, within MPMX19_06763at 29.743 kb on - strand, within MPMX19_06763at 29.919 kb on + strand, within MPMX19_06763at 29.920 kb on - strand, within MPMX19_06763at 30.090 kb on + strand, within MPMX19_06763at 30.091 kb on - strand, within MPMX19_06763at 30.091 kb on - strand, within MPMX19_06763at 30.305 kb on + strandat 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.585 kb on + strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.586 kb on - strand, within MPMX19_06764at 30.645 kb on + strand, within MPMX19_06764at 30.645 kb on + strand, within MPMX19_06764at 30.645 kb on + strand, within MPMX19_06764at 30.645 kb on + strand, within MPMX19_06764at 30.645 kb on + strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.646 kb on - strand, within MPMX19_06764at 30.918 kb on + strand, within MPMX19_06764at 30.919 kb on - strand, within MPMX19_06764at 30.919 kb on - strand, within MPMX19_06764at 30.919 kb on - strand, within MPMX19_06764at 30.919 kb on - strand, within MPMX19_06764at 30.919 kb on - strand, within MPMX19_06764at 30.996 kb on + strandat 30.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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28,480 - -0.2
28,513 + -1.0
28,566 - -0.6
28,566 - -1.7
28,649 + +1.6
28,649 + -0.2
28,650 - +0.8
28,650 - +1.4
28,650 - +0.2
28,650 - -1.2
28,650 - -0.5
28,805 + MPMX19_06762 0.16 -1.2
28,908 - MPMX19_06762 0.36 +0.6
28,908 - MPMX19_06762 0.36 -1.3
28,908 - MPMX19_06762 0.36 +0.5
29,415 + +0.2
29,415 + -0.4
29,415 + -0.4
29,415 + +0.2
29,415 + -0.6
29,415 + -0.9
29,415 + -2.0
29,416 - +1.6
29,416 - -0.5
29,416 - +0.5
29,416 - +0.2
29,535 + MPMX19_06763 0.21 -0.1
29,535 + MPMX19_06763 0.21 -0.7
29,572 - MPMX19_06763 0.25 +0.1
29,709 + MPMX19_06763 0.40 -1.4
29,710 - MPMX19_06763 0.40 +0.4
29,742 + MPMX19_06763 0.44 -0.7
29,742 + MPMX19_06763 0.44 -1.2
29,742 + MPMX19_06763 0.44 -1.4
29,743 - MPMX19_06763 0.44 -1.2
29,919 + MPMX19_06763 0.63 -0.5
29,920 - MPMX19_06763 0.63 -0.8
30,090 + MPMX19_06763 0.81 -1.0
30,091 - MPMX19_06763 0.82 -0.2
30,091 - MPMX19_06763 0.82 -1.2
30,305 + +0.2
30,585 + MPMX19_06764 0.30 -1.6
30,585 + MPMX19_06764 0.30 -1.0
30,585 + MPMX19_06764 0.30 -1.3
30,585 + MPMX19_06764 0.30 +0.5
30,585 + MPMX19_06764 0.30 -1.4
30,585 + MPMX19_06764 0.30 -0.5
30,585 + MPMX19_06764 0.30 +0.0
30,585 + MPMX19_06764 0.30 -1.2
30,585 + MPMX19_06764 0.30 +1.2
30,585 + MPMX19_06764 0.30 -1.2
30,586 - MPMX19_06764 0.30 -0.1
30,586 - MPMX19_06764 0.30 -1.3
30,586 - MPMX19_06764 0.30 -0.1
30,586 - MPMX19_06764 0.30 -1.5
30,586 - MPMX19_06764 0.30 -1.0
30,586 - MPMX19_06764 0.30 +0.3
30,586 - MPMX19_06764 0.30 +0.4
30,645 + MPMX19_06764 0.39 +0.4
30,645 + MPMX19_06764 0.39 +0.3
30,645 + MPMX19_06764 0.39 +0.6
30,645 + MPMX19_06764 0.39 -1.0
30,645 + MPMX19_06764 0.39 -0.8
30,646 - MPMX19_06764 0.39 -0.6
30,646 - MPMX19_06764 0.39 -0.2
30,646 - MPMX19_06764 0.39 -1.4
30,646 - MPMX19_06764 0.39 +0.3
30,646 - MPMX19_06764 0.39 +0.9
30,646 - MPMX19_06764 0.39 -1.3
30,646 - MPMX19_06764 0.39 -0.9
30,646 - MPMX19_06764 0.39 +1.0
30,646 - MPMX19_06764 0.39 -1.7
30,646 - MPMX19_06764 0.39 +0.0
30,646 - MPMX19_06764 0.39 -0.9
30,918 + MPMX19_06764 0.79 -0.9
30,919 - MPMX19_06764 0.79 -0.1
30,919 - MPMX19_06764 0.79 +0.3
30,919 - MPMX19_06764 0.79 -0.8
30,919 - MPMX19_06764 0.79 -0.2
30,919 - MPMX19_06764 0.79 -1.6
30,996 + +2.0
30,997 - +0.2

Or see this region's nucleotide sequence