Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06755 and MPMX19_06756 are separated by 44 nucleotides MPMX19_06756 and MPMX19_06757 are separated by 14 nucleotides MPMX19_06757 and MPMX19_06758 are separated by 26 nucleotides MPMX19_06758 and MPMX19_06759 overlap by 4 nucleotides
MPMX19_06755: MPMX19_06755 - Hypotaurine/taurine--pyruvate aminotransferase, at 21,002 to 22,399
_06755
MPMX19_06756: MPMX19_06756 - Serine 3-dehydrogenase, at 22,444 to 23,232
_06756
MPMX19_06757: MPMX19_06757 - hypothetical protein, at 23,247 to 24,002
_06757
MPMX19_06758: MPMX19_06758 - Putative aliphatic sulfonates transport permease protein SsuC, at 24,029 to 24,910
_06758
MPMX19_06759: MPMX19_06759 - Taurine import ATP-binding protein TauB, at 24,907 to 25,710
_06759
Position (kb) 23
24
25 Strain fitness (log2 ratio) -1
0
1 at 22.412 kb on - strand at 22.757 kb on + strand, within MPMX19_06756 at 23.194 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.226 kb on + strand at 23.227 kb on - strand at 23.227 kb on - strand at 23.932 kb on + strand at 23.932 kb on + strand at 23.932 kb on + strand at 23.933 kb on - strand at 23.933 kb on - strand at 24.466 kb on - strand, within MPMX19_06758 at 24.466 kb on - strand, within MPMX19_06758 at 24.466 kb on - strand, within MPMX19_06758
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 22,412 - +0.1 22,757 + MPMX19_06756 0.40 -0.3 23,194 + -1.6 23,226 + -1.4 23,226 + +0.7 23,226 + -1.5 23,227 - -1.0 23,227 - +1.7 23,932 + -0.3 23,932 + -0.2 23,932 + -0.1 23,933 - -0.4 23,933 - -0.7 24,466 - MPMX19_06758 0.50 +0.1 24,466 - MPMX19_06758 0.50 -1.2 24,466 - MPMX19_06758 0.50 -1.2
Or see this region's nucleotide sequence