Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06755

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06754 and MPMX19_06755 are separated by 88 nucleotidesMPMX19_06755 and MPMX19_06756 are separated by 44 nucleotidesMPMX19_06756 and MPMX19_06757 are separated by 14 nucleotides MPMX19_06754: MPMX19_06754 - hypothetical protein, at 19,993 to 20,913 _06754 MPMX19_06755: MPMX19_06755 - Hypotaurine/taurine--pyruvate aminotransferase, at 21,002 to 22,399 _06755 MPMX19_06756: MPMX19_06756 - Serine 3-dehydrogenase, at 22,444 to 23,232 _06756 MPMX19_06757: MPMX19_06757 - hypothetical protein, at 23,247 to 24,002 _06757 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 20.157 kb on + strand, within MPMX19_06754at 20.158 kb on - strand, within MPMX19_06754at 20.158 kb on - strand, within MPMX19_06754at 20.158 kb on - strand, within MPMX19_06754at 20.158 kb on - strand, within MPMX19_06754at 20.215 kb on + strand, within MPMX19_06754at 20.215 kb on + strand, within MPMX19_06754at 20.216 kb on - strand, within MPMX19_06754at 20.216 kb on - strand, within MPMX19_06754at 20.216 kb on - strand, within MPMX19_06754at 20.216 kb on - strand, within MPMX19_06754at 20.216 kb on - strand, within MPMX19_06754at 20.218 kb on - strand, within MPMX19_06754at 20.367 kb on - strand, within MPMX19_06754at 20.608 kb on + strand, within MPMX19_06754at 20.608 kb on + strand, within MPMX19_06754at 20.609 kb on - strand, within MPMX19_06754at 20.609 kb on - strand, within MPMX19_06754at 20.609 kb on - strand, within MPMX19_06754at 20.609 kb on - strand, within MPMX19_06754at 20.641 kb on + strand, within MPMX19_06754at 20.641 kb on + strand, within MPMX19_06754at 20.641 kb on + strand, within MPMX19_06754at 20.641 kb on + strand, within MPMX19_06754at 20.641 kb on + strand, within MPMX19_06754at 20.642 kb on - strand, within MPMX19_06754at 20.642 kb on - strand, within MPMX19_06754at 20.680 kb on + strand, within MPMX19_06754at 20.681 kb on - strand, within MPMX19_06754at 20.681 kb on - strand, within MPMX19_06754at 20.758 kb on + strand, within MPMX19_06754at 20.758 kb on + strand, within MPMX19_06754at 20.758 kb on + strand, within MPMX19_06754at 20.759 kb on - strand, within MPMX19_06754at 20.911 kb on + strandat 20.912 kb on - strandat 21.504 kb on + strand, within MPMX19_06755at 21.504 kb on + strand, within MPMX19_06755at 21.505 kb on - strand, within MPMX19_06755at 21.505 kb on - strand, within MPMX19_06755at 21.556 kb on - strand, within MPMX19_06755at 21.663 kb on + strand, within MPMX19_06755at 21.663 kb on + strand, within MPMX19_06755at 21.663 kb on + strand, within MPMX19_06755at 21.664 kb on - strand, within MPMX19_06755at 21.786 kb on + strand, within MPMX19_06755at 21.787 kb on - strand, within MPMX19_06755at 21.817 kb on - strand, within MPMX19_06755at 21.924 kb on + strand, within MPMX19_06755at 21.925 kb on - strand, within MPMX19_06755at 21.925 kb on - strand, within MPMX19_06755at 21.925 kb on - strand, within MPMX19_06755at 21.940 kb on - strand, within MPMX19_06755at 22.035 kb on + strand, within MPMX19_06755at 22.035 kb on + strand, within MPMX19_06755at 22.036 kb on - strand, within MPMX19_06755at 22.038 kb on + strand, within MPMX19_06755at 22.038 kb on + strand, within MPMX19_06755at 22.038 kb on + strand, within MPMX19_06755at 22.038 kb on + strand, within MPMX19_06755at 22.039 kb on - strand, within MPMX19_06755at 22.039 kb on - strand, within MPMX19_06755at 22.039 kb on - strand, within MPMX19_06755at 22.122 kb on + strand, within MPMX19_06755at 22.122 kb on + strand, within MPMX19_06755at 22.122 kb on + strand, within MPMX19_06755at 22.122 kb on + strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.123 kb on - strand, within MPMX19_06755at 22.177 kb on - strand, within MPMX19_06755at 22.221 kb on + strand, within MPMX19_06755at 22.221 kb on + strand, within MPMX19_06755at 22.412 kb on - strandat 22.757 kb on + strand, within MPMX19_06756at 23.194 kb on + strandat 23.226 kb on + strandat 23.226 kb on + strandat 23.226 kb on + strandat 23.227 kb on - strandat 23.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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20,157 + MPMX19_06754 0.18 -0.2
20,158 - MPMX19_06754 0.18 -0.3
20,158 - MPMX19_06754 0.18 -0.2
20,158 - MPMX19_06754 0.18 -0.4
20,158 - MPMX19_06754 0.18 -1.4
20,215 + MPMX19_06754 0.24 +0.9
20,215 + MPMX19_06754 0.24 -0.7
20,216 - MPMX19_06754 0.24 +0.4
20,216 - MPMX19_06754 0.24 +0.0
20,216 - MPMX19_06754 0.24 -0.8
20,216 - MPMX19_06754 0.24 +0.7
20,216 - MPMX19_06754 0.24 +0.6
20,218 - MPMX19_06754 0.24 -0.9
20,367 - MPMX19_06754 0.41 -0.6
20,608 + MPMX19_06754 0.67 -0.5
20,608 + MPMX19_06754 0.67 -1.2
20,609 - MPMX19_06754 0.67 -0.9
20,609 - MPMX19_06754 0.67 -0.2
20,609 - MPMX19_06754 0.67 +0.6
20,609 - MPMX19_06754 0.67 +0.3
20,641 + MPMX19_06754 0.70 -0.6
20,641 + MPMX19_06754 0.70 -1.0
20,641 + MPMX19_06754 0.70 -0.2
20,641 + MPMX19_06754 0.70 +0.2
20,641 + MPMX19_06754 0.70 +0.1
20,642 - MPMX19_06754 0.70 -0.7
20,642 - MPMX19_06754 0.70 +1.0
20,680 + MPMX19_06754 0.75 -0.3
20,681 - MPMX19_06754 0.75 +0.6
20,681 - MPMX19_06754 0.75 +0.3
20,758 + MPMX19_06754 0.83 -0.3
20,758 + MPMX19_06754 0.83 -0.4
20,758 + MPMX19_06754 0.83 -0.2
20,759 - MPMX19_06754 0.83 -1.1
20,911 + +0.8
20,912 - -0.8
21,504 + MPMX19_06755 0.36 +0.6
21,504 + MPMX19_06755 0.36 +1.6
21,505 - MPMX19_06755 0.36 -1.1
21,505 - MPMX19_06755 0.36 +0.6
21,556 - MPMX19_06755 0.40 -1.7
21,663 + MPMX19_06755 0.47 +0.5
21,663 + MPMX19_06755 0.47 -0.2
21,663 + MPMX19_06755 0.47 +0.0
21,664 - MPMX19_06755 0.47 +0.2
21,786 + MPMX19_06755 0.56 -0.7
21,787 - MPMX19_06755 0.56 -0.6
21,817 - MPMX19_06755 0.58 -0.1
21,924 + MPMX19_06755 0.66 +1.0
21,925 - MPMX19_06755 0.66 -0.5
21,925 - MPMX19_06755 0.66 -1.0
21,925 - MPMX19_06755 0.66 -0.8
21,940 - MPMX19_06755 0.67 -0.6
22,035 + MPMX19_06755 0.74 +1.0
22,035 + MPMX19_06755 0.74 -0.4
22,036 - MPMX19_06755 0.74 -1.0
22,038 + MPMX19_06755 0.74 +0.3
22,038 + MPMX19_06755 0.74 +0.7
22,038 + MPMX19_06755 0.74 +0.6
22,038 + MPMX19_06755 0.74 +1.0
22,039 - MPMX19_06755 0.74 +0.9
22,039 - MPMX19_06755 0.74 -0.4
22,039 - MPMX19_06755 0.74 +0.4
22,122 + MPMX19_06755 0.80 -0.1
22,122 + MPMX19_06755 0.80 +0.3
22,122 + MPMX19_06755 0.80 -1.9
22,122 + MPMX19_06755 0.80 +0.3
22,123 - MPMX19_06755 0.80 -1.1
22,123 - MPMX19_06755 0.80 -0.1
22,123 - MPMX19_06755 0.80 -1.2
22,123 - MPMX19_06755 0.80 -0.7
22,123 - MPMX19_06755 0.80 -0.2
22,123 - MPMX19_06755 0.80 +0.2
22,123 - MPMX19_06755 0.80 +0.0
22,123 - MPMX19_06755 0.80 +0.5
22,177 - MPMX19_06755 0.84 +1.1
22,221 + MPMX19_06755 0.87 -0.9
22,221 + MPMX19_06755 0.87 +1.6
22,412 - +0.1
22,757 + MPMX19_06756 0.40 -0.3
23,194 + -1.6
23,226 + -1.4
23,226 + +0.7
23,226 + -1.5
23,227 - -1.0
23,227 - +1.7

Or see this region's nucleotide sequence