Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06706 and MPMX19_06707 are separated by 62 nucleotides MPMX19_06707 and MPMX19_06708 are separated by 291 nucleotides MPMX19_06708 and MPMX19_06709 are separated by 124 nucleotides
MPMX19_06706: MPMX19_06706 - hypothetical protein, at 276,619 to 277,863
_06706
MPMX19_06707: MPMX19_06707 - Sensor histidine kinase RcsC, at 277,926 to 279,608
_06707
MPMX19_06708: MPMX19_06708 - Translation initiation factor IF-3, at 279,900 to 280,364
_06708
MPMX19_06709: MPMX19_06709 - hypothetical protein, at 280,489 to 280,701
_06709
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.160 kb on + strand, within MPMX19_06706 at 277.160 kb on + strand, within MPMX19_06706 at 277.161 kb on - strand, within MPMX19_06706 at 277.161 kb on - strand, within MPMX19_06706 at 277.161 kb on - strand, within MPMX19_06706 at 277.161 kb on - strand, within MPMX19_06706 at 277.190 kb on + strand, within MPMX19_06706 at 277.217 kb on + strand, within MPMX19_06706 at 277.217 kb on + strand, within MPMX19_06706 at 277.217 kb on + strand, within MPMX19_06706 at 277.217 kb on + strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.218 kb on - strand, within MPMX19_06706 at 277.259 kb on + strand, within MPMX19_06706 at 277.259 kb on + strand, within MPMX19_06706 at 277.259 kb on + strand, within MPMX19_06706 at 277.259 kb on + strand, within MPMX19_06706 at 277.259 kb on + strand, within MPMX19_06706 at 277.260 kb on - strand, within MPMX19_06706 at 277.260 kb on - strand, within MPMX19_06706 at 277.260 kb on - strand, within MPMX19_06706 at 277.260 kb on - strand, within MPMX19_06706 at 277.265 kb on + strand, within MPMX19_06706 at 277.265 kb on + strand, within MPMX19_06706 at 277.265 kb on + strand, within MPMX19_06706 at 277.265 kb on + strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.266 kb on - strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.664 kb on + strand, within MPMX19_06706 at 277.665 kb on - strand, within MPMX19_06706 at 277.665 kb on - strand, within MPMX19_06706 at 277.665 kb on - strand, within MPMX19_06706 at 277.665 kb on - strand, within MPMX19_06706 at 277.879 kb on + strand at 277.879 kb on + strand at 277.879 kb on + strand at 277.879 kb on + strand at 277.879 kb on + strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 277.880 kb on - strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.030 kb on + strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.031 kb on - strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.036 kb on + strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.037 kb on - strand at 278.095 kb on + strand, within MPMX19_06707 at 278.096 kb on - strand, within MPMX19_06707 at 278.096 kb on - strand, within MPMX19_06707 at 278.096 kb on - strand, within MPMX19_06707 at 278.128 kb on + strand, within MPMX19_06707 at 278.129 kb on - strand, within MPMX19_06707 at 278.129 kb on - strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.299 kb on + strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.300 kb on - strand, within MPMX19_06707 at 278.542 kb on + strand, within MPMX19_06707 at 278.542 kb on + strand, within MPMX19_06707 at 278.542 kb on + strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.543 kb on - strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.668 kb on + strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 278.669 kb on - strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.409 kb on + strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.410 kb on - strand, within MPMX19_06707 at 279.451 kb on + strand at 279.451 kb on + strand at 279.451 kb on + strand at 279.451 kb on + strand at 279.451 kb on + strand at 279.451 kb on + strand at 279.451 kb on + strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.452 kb on - strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.523 kb on + strand at 279.524 kb on - strand at 279.524 kb on - strand at 279.524 kb on - strand at 279.524 kb on - strand at 279.524 kb on - strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.608 kb on + strand at 279.609 kb on - strand at 279.609 kb on - strand at 279.609 kb on - strand at 279.609 kb on - strand at 279.609 kb on - strand at 279.609 kb on - strand at 279.687 kb on + strand at 279.687 kb on + strand at 279.712 kb on + strand at 279.712 kb on + strand at 279.713 kb on - strand at 279.745 kb on + strand at 279.746 kb on - strand at 279.746 kb on - strand at 279.804 kb on + strand at 279.804 kb on + strand at 279.804 kb on + strand at 279.805 kb on - strand at 279.805 kb on - strand at 280.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 277,160 + MPMX19_06706 0.43 -2.2 277,160 + MPMX19_06706 0.43 -0.3 277,161 - MPMX19_06706 0.44 -0.2 277,161 - MPMX19_06706 0.44 -0.1 277,161 - MPMX19_06706 0.44 -1.3 277,161 - MPMX19_06706 0.44 +0.0 277,190 + MPMX19_06706 0.46 -0.2 277,217 + MPMX19_06706 0.48 +1.0 277,217 + MPMX19_06706 0.48 -1.1 277,217 + MPMX19_06706 0.48 -1.7 277,217 + MPMX19_06706 0.48 -1.1 277,218 - MPMX19_06706 0.48 -0.5 277,218 - MPMX19_06706 0.48 -1.2 277,218 - MPMX19_06706 0.48 +0.2 277,218 - MPMX19_06706 0.48 -1.0 277,218 - MPMX19_06706 0.48 -1.2 277,218 - MPMX19_06706 0.48 -0.5 277,218 - MPMX19_06706 0.48 +0.4 277,218 - MPMX19_06706 0.48 -0.9 277,259 + MPMX19_06706 0.51 +0.2 277,259 + MPMX19_06706 0.51 +1.1 277,259 + MPMX19_06706 0.51 -0.3 277,259 + MPMX19_06706 0.51 -0.8 277,259 + MPMX19_06706 0.51 -0.1 277,260 - MPMX19_06706 0.51 -0.5 277,260 - MPMX19_06706 0.51 +0.0 277,260 - MPMX19_06706 0.51 +1.3 277,260 - MPMX19_06706 0.51 -0.6 277,265 + MPMX19_06706 0.52 -0.3 277,265 + MPMX19_06706 0.52 +0.2 277,265 + MPMX19_06706 0.52 -2.0 277,265 + MPMX19_06706 0.52 -0.7 277,266 - MPMX19_06706 0.52 -0.1 277,266 - MPMX19_06706 0.52 +0.1 277,266 - MPMX19_06706 0.52 -1.0 277,266 - MPMX19_06706 0.52 -0.2 277,266 - MPMX19_06706 0.52 -0.5 277,266 - MPMX19_06706 0.52 +0.0 277,266 - MPMX19_06706 0.52 -0.8 277,664 + MPMX19_06706 0.84 +0.6 277,664 + MPMX19_06706 0.84 +2.4 277,664 + MPMX19_06706 0.84 +0.5 277,664 + MPMX19_06706 0.84 -0.2 277,664 + MPMX19_06706 0.84 -0.5 277,664 + MPMX19_06706 0.84 -1.1 277,664 + MPMX19_06706 0.84 -0.6 277,665 - MPMX19_06706 0.84 -0.8 277,665 - MPMX19_06706 0.84 -2.0 277,665 - MPMX19_06706 0.84 -1.4 277,665 - MPMX19_06706 0.84 -0.6 277,879 + -0.2 277,879 + -0.2 277,879 + +0.3 277,879 + -0.4 277,879 + -0.5 277,880 - -0.1 277,880 - -0.2 277,880 - +0.1 277,880 - +0.3 277,880 - -1.0 277,880 - -0.8 277,880 - -0.5 277,880 - -1.4 277,880 - -0.3 277,880 - -0.5 277,880 - -0.2 278,030 + -0.2 278,030 + -1.0 278,030 + -0.2 278,030 + -0.8 278,030 + -0.2 278,030 + +0.9 278,030 + +0.2 278,030 + +0.3 278,030 + -0.3 278,030 + -0.5 278,030 + -0.2 278,030 + +0.1 278,030 + -1.5 278,030 + +2.0 278,030 + -1.5 278,030 + -1.8 278,030 + -1.4 278,030 + -0.4 278,031 - -1.5 278,031 - +0.0 278,031 - -0.2 278,031 - +0.8 278,031 - -0.1 278,031 - -1.2 278,031 - +0.1 278,031 - -0.8 278,031 - +1.5 278,031 - -2.3 278,031 - -0.7 278,031 - -1.5 278,031 - -1.9 278,031 - +0.5 278,031 - -1.0 278,031 - -0.9 278,031 - -1.5 278,031 - +0.7 278,036 + +0.5 278,036 + +1.0 278,036 + -1.5 278,036 + +0.3 278,036 + +0.5 278,036 + +0.0 278,036 + +0.6 278,036 + -0.7 278,036 + -0.7 278,036 + -0.2 278,036 + +0.9 278,036 + -1.0 278,037 - +0.8 278,037 - -2.3 278,037 - -0.3 278,037 - -0.2 278,037 - -0.6 278,037 - -0.1 278,037 - -1.4 278,037 - -0.5 278,037 - +0.0 278,037 - -1.0 278,037 - -0.2 278,037 - -0.7 278,037 - +0.6 278,037 - -1.1 278,037 - -0.2 278,037 - -0.3 278,037 - +0.3 278,037 - -0.7 278,037 - -0.1 278,037 - +0.0 278,037 - -0.4 278,037 - -1.0 278,037 - -1.0 278,037 - -0.4 278,095 + MPMX19_06707 0.10 +1.2 278,096 - MPMX19_06707 0.10 +0.5 278,096 - MPMX19_06707 0.10 -1.5 278,096 - MPMX19_06707 0.10 +0.4 278,128 + MPMX19_06707 0.12 +0.5 278,129 - MPMX19_06707 0.12 +0.0 278,129 - MPMX19_06707 0.12 -0.0 278,299 + MPMX19_06707 0.22 +0.6 278,299 + MPMX19_06707 0.22 -1.0 278,299 + MPMX19_06707 0.22 +0.5 278,299 + MPMX19_06707 0.22 -0.2 278,299 + MPMX19_06707 0.22 +0.2 278,299 + MPMX19_06707 0.22 -0.4 278,299 + MPMX19_06707 0.22 +0.8 278,299 + MPMX19_06707 0.22 +0.0 278,299 + MPMX19_06707 0.22 -0.9 278,300 - MPMX19_06707 0.22 -0.5 278,300 - MPMX19_06707 0.22 +0.5 278,300 - MPMX19_06707 0.22 +0.0 278,300 - MPMX19_06707 0.22 -0.6 278,300 - MPMX19_06707 0.22 -0.4 278,300 - MPMX19_06707 0.22 -0.9 278,300 - MPMX19_06707 0.22 -0.5 278,300 - MPMX19_06707 0.22 -1.5 278,542 + MPMX19_06707 0.37 +0.0 278,542 + MPMX19_06707 0.37 -0.2 278,542 + MPMX19_06707 0.37 -1.8 278,543 - MPMX19_06707 0.37 +0.3 278,543 - MPMX19_06707 0.37 -0.8 278,543 - MPMX19_06707 0.37 +0.2 278,543 - MPMX19_06707 0.37 +0.4 278,543 - MPMX19_06707 0.37 -0.4 278,543 - MPMX19_06707 0.37 +0.1 278,543 - MPMX19_06707 0.37 +0.6 278,668 + MPMX19_06707 0.44 -0.2 278,668 + MPMX19_06707 0.44 -0.7 278,668 + MPMX19_06707 0.44 +0.9 278,668 + MPMX19_06707 0.44 +0.3 278,668 + MPMX19_06707 0.44 -1.5 278,668 + MPMX19_06707 0.44 -0.3 278,668 + MPMX19_06707 0.44 +0.0 278,669 - MPMX19_06707 0.44 -0.2 278,669 - MPMX19_06707 0.44 +0.6 278,669 - MPMX19_06707 0.44 -0.6 278,669 - MPMX19_06707 0.44 -0.0 278,669 - MPMX19_06707 0.44 +0.5 278,669 - MPMX19_06707 0.44 +0.0 278,669 - MPMX19_06707 0.44 +0.7 278,669 - MPMX19_06707 0.44 -0.3 279,409 + MPMX19_06707 0.88 +0.0 279,409 + MPMX19_06707 0.88 +0.1 279,409 + MPMX19_06707 0.88 -1.8 279,409 + MPMX19_06707 0.88 -1.4 279,409 + MPMX19_06707 0.88 -0.1 279,409 + MPMX19_06707 0.88 -2.3 279,409 + MPMX19_06707 0.88 -1.0 279,409 + MPMX19_06707 0.88 +0.6 279,409 + MPMX19_06707 0.88 +0.2 279,409 + MPMX19_06707 0.88 -0.1 279,409 + MPMX19_06707 0.88 -0.9 279,409 + MPMX19_06707 0.88 +0.3 279,409 + MPMX19_06707 0.88 +0.2 279,410 - MPMX19_06707 0.88 -0.9 279,410 - MPMX19_06707 0.88 +1.8 279,410 - MPMX19_06707 0.88 +0.6 279,410 - MPMX19_06707 0.88 -0.6 279,410 - MPMX19_06707 0.88 +0.4 279,410 - MPMX19_06707 0.88 +1.0 279,410 - MPMX19_06707 0.88 +1.0 279,410 - MPMX19_06707 0.88 +0.2 279,410 - MPMX19_06707 0.88 -1.8 279,410 - MPMX19_06707 0.88 +0.5 279,410 - MPMX19_06707 0.88 +1.4 279,410 - MPMX19_06707 0.88 +1.3 279,410 - MPMX19_06707 0.88 -0.4 279,410 - MPMX19_06707 0.88 -2.2 279,451 + -0.4 279,451 + -1.5 279,451 + -0.8 279,451 + -0.2 279,451 + -1.1 279,451 + -0.6 279,451 + -0.4 279,452 - -0.6 279,452 - -1.1 279,452 - -1.0 279,452 - -1.0 279,452 - -0.4 279,452 - -0.6 279,452 - +0.5 279,452 - +0.6 279,452 - +1.6 279,452 - -0.5 279,452 - +0.2 279,523 + -1.6 279,523 + -1.5 279,523 + -0.3 279,523 + -1.5 279,523 + +0.2 279,523 + -2.0 279,523 + -1.4 279,523 + +0.0 279,524 - +0.0 279,524 - -1.3 279,524 - -0.5 279,524 - -2.3 279,524 - -0.4 279,608 + +0.3 279,608 + -0.6 279,608 + -1.0 279,608 + +0.4 279,608 + -1.0 279,608 + +1.2 279,608 + +0.6 279,609 - -0.9 279,609 - -1.0 279,609 - -0.3 279,609 - +1.1 279,609 - -0.7 279,609 - -1.1 279,687 + +0.0 279,687 + -2.3 279,712 + -1.2 279,712 + -0.5 279,713 - +0.0 279,745 + -0.6 279,746 - +1.0 279,746 - -0.2 279,804 + -0.6 279,804 + -0.2 279,804 + +0.6 279,805 - -0.0 279,805 - +0.0 280,485 - -0.7
Or see this region's nucleotide sequence