Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06698 and MPMX19_06699 are separated by 12 nucleotides MPMX19_06699 and MPMX19_06700 are separated by 10 nucleotides MPMX19_06700 and MPMX19_06701 are separated by 96 nucleotides MPMX19_06701 and MPMX19_06702 are separated by 40 nucleotides
MPMX19_06698: MPMX19_06698 - hypothetical protein, at 267,560 to 267,949
_06698
MPMX19_06699: MPMX19_06699 - Nickel/cobalt efflux system RcnA, at 267,962 to 268,831
_06699
MPMX19_06700: MPMX19_06700 - Copper-sensing transcriptional repressor RicR, at 268,842 to 269,111
_06700
MPMX19_06701: MPMX19_06701 - hypothetical protein, at 269,208 to 269,687
_06701
MPMX19_06702: MPMX19_06702 - Cadmium-transporting ATPase, at 269,728 to 272,016
_06702
Position (kb) 268
269
270 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.963 kb on + strand at 267.963 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.015 kb on - strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.560 kb on + strand, within MPMX19_06699 at 268.561 kb on - strand, within MPMX19_06699 at 268.561 kb on - strand, within MPMX19_06699 at 268.561 kb on - strand, within MPMX19_06699 at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 269.042 kb on + strand, within MPMX19_06700 at 269.042 kb on + strand, within MPMX19_06700 at 269.043 kb on - strand, within MPMX19_06700 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.283 kb on - strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.835 kb on + strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 267,891 + MPMX19_06698 0.85 -0.4 267,891 + MPMX19_06698 0.85 -0.2 267,891 + MPMX19_06698 0.85 -1.0 267,891 + MPMX19_06698 0.85 -0.0 267,891 + MPMX19_06698 0.85 -0.5 267,891 + MPMX19_06698 0.85 -0.4 267,891 + MPMX19_06698 0.85 +0.0 267,892 - MPMX19_06698 0.85 -1.1 267,892 - MPMX19_06698 0.85 -0.1 267,892 - MPMX19_06698 0.85 +0.6 267,892 - MPMX19_06698 0.85 +0.6 267,892 - MPMX19_06698 0.85 +0.4 267,892 - MPMX19_06698 0.85 -0.7 267,892 - MPMX19_06698 0.85 +0.2 267,963 + +0.0 267,963 + -0.8 268,014 + -0.6 268,014 + -0.2 268,014 + -0.1 268,015 - -0.7 268,047 + -0.3 268,047 + -0.2 268,047 + +0.2 268,047 + -0.4 268,047 + -1.1 268,047 + -0.4 268,047 + -0.1 268,047 + -2.1 268,047 + -0.4 268,048 - -1.0 268,048 - -0.8 268,048 - -0.2 268,048 - -0.7 268,048 - +0.3 268,048 - +0.0 268,048 - -0.5 268,083 + MPMX19_06699 0.14 -0.2 268,083 + MPMX19_06699 0.14 +0.5 268,083 + MPMX19_06699 0.14 -2.0 268,083 + MPMX19_06699 0.14 +0.2 268,083 + MPMX19_06699 0.14 -1.2 268,083 + MPMX19_06699 0.14 -1.0 268,083 + MPMX19_06699 0.14 -0.1 268,083 + MPMX19_06699 0.14 -0.4 268,083 + MPMX19_06699 0.14 -1.3 268,083 + MPMX19_06699 0.14 -0.1 268,083 + MPMX19_06699 0.14 -0.2 268,084 - MPMX19_06699 0.14 +2.2 268,084 - MPMX19_06699 0.14 -0.4 268,084 - MPMX19_06699 0.14 -1.3 268,084 - MPMX19_06699 0.14 -2.7 268,084 - MPMX19_06699 0.14 +0.4 268,084 - MPMX19_06699 0.14 -0.4 268,084 - MPMX19_06699 0.14 -1.4 268,084 - MPMX19_06699 0.14 -0.9 268,084 - MPMX19_06699 0.14 -0.6 268,084 - MPMX19_06699 0.14 -0.4 268,084 - MPMX19_06699 0.14 +0.0 268,084 - MPMX19_06699 0.14 -0.3 268,560 + MPMX19_06699 0.69 +1.0 268,560 + MPMX19_06699 0.69 -2.5 268,560 + MPMX19_06699 0.69 -1.0 268,560 + MPMX19_06699 0.69 -0.6 268,560 + MPMX19_06699 0.69 +0.0 268,560 + MPMX19_06699 0.69 -0.4 268,561 - MPMX19_06699 0.69 +0.2 268,561 - MPMX19_06699 0.69 -0.2 268,561 - MPMX19_06699 0.69 +0.6 268,843 + +0.7 268,843 + -0.9 268,843 + -0.2 268,843 + -0.1 268,843 + -0.2 268,844 - -1.1 268,844 - -0.1 268,844 - +0.2 268,844 - -0.5 268,844 - -0.4 268,849 + +0.5 268,849 + -0.5 268,849 + -0.2 268,849 + -0.7 268,849 + -0.8 268,849 + +0.5 268,849 + -0.6 268,849 + -0.2 268,849 + -0.4 268,849 + -0.8 268,849 + -1.5 268,849 + +0.1 268,849 + -0.7 268,850 - -0.8 268,850 - -0.2 268,850 - +0.6 268,850 - -1.1 269,042 + MPMX19_06700 0.74 -0.8 269,042 + MPMX19_06700 0.74 -3.9 269,043 - MPMX19_06700 0.74 +0.6 269,263 + MPMX19_06701 0.11 -1.0 269,263 + MPMX19_06701 0.11 -1.4 269,263 + MPMX19_06701 0.11 -0.7 269,263 + MPMX19_06701 0.11 -1.0 269,263 + MPMX19_06701 0.11 -0.4 269,264 - MPMX19_06701 0.12 -0.9 269,264 - MPMX19_06701 0.12 +0.4 269,264 - MPMX19_06701 0.12 +0.3 269,264 - MPMX19_06701 0.12 -1.4 269,264 - MPMX19_06701 0.12 +0.8 269,264 - MPMX19_06701 0.12 +0.2 269,264 - MPMX19_06701 0.12 -0.7 269,264 - MPMX19_06701 0.12 -0.2 269,282 + MPMX19_06701 0.15 -1.1 269,282 + MPMX19_06701 0.15 -1.2 269,282 + MPMX19_06701 0.15 +0.2 269,283 - MPMX19_06701 0.16 -1.3 269,395 + MPMX19_06701 0.39 -1.2 269,395 + MPMX19_06701 0.39 -0.1 269,395 + MPMX19_06701 0.39 +0.4 269,395 + MPMX19_06701 0.39 +0.6 269,395 + MPMX19_06701 0.39 +0.8 269,395 + MPMX19_06701 0.39 -1.4 269,395 + MPMX19_06701 0.39 +0.4 269,395 + MPMX19_06701 0.39 +0.3 269,395 + MPMX19_06701 0.39 +0.5 269,395 + MPMX19_06701 0.39 -1.1 269,395 + MPMX19_06701 0.39 -0.1 269,396 - MPMX19_06701 0.39 +0.6 269,396 - MPMX19_06701 0.39 -0.9 269,396 - MPMX19_06701 0.39 -1.7 269,396 - MPMX19_06701 0.39 -0.5 269,396 - MPMX19_06701 0.39 -1.2 269,835 + -1.9 269,836 - -0.1 269,836 - +0.4 269,836 - +0.5 269,884 + -1.5 269,884 + -0.6 269,884 + -1.5 269,884 + -2.1 269,884 + +0.1 269,884 + -0.0 269,884 + -2.0 269,884 + -0.2 269,884 + -0.6 269,884 + -0.5 269,884 + -1.3 269,884 + -1.1 269,884 + +0.6 269,884 + +0.0 269,884 + +0.3 269,884 + -0.1 269,884 + -0.4 269,884 + +0.6 269,884 + +0.4 269,884 + -0.8 269,884 + -0.7 269,884 + -0.3 269,884 + -2.4 269,884 + -1.3 269,884 + -1.1 269,884 + -0.4 269,884 + +0.3 269,884 + -0.8 269,884 + +0.0 269,884 + -0.9 269,884 + +1.0 269,884 + +0.6 269,884 + -0.2 269,884 + -1.3 269,884 + -1.4 269,884 + +0.9 269,884 + +0.5 269,884 + -0.0 269,884 + -1.3 269,884 + -0.6 269,884 + -1.6 269,885 - +0.4 269,885 - -0.8 269,885 - -0.5 269,885 - +0.0 269,885 - -0.6 269,885 - -0.3 269,885 - -0.8 269,885 - -0.5 269,885 - -1.8 269,885 - -0.3 269,885 - -1.2 269,885 - -0.5 269,885 - +0.0 269,885 - -0.5 269,885 - -1.4 269,885 - -0.4 269,885 - -1.4 269,885 - -1.1 269,885 - -0.2 269,885 - +0.4 269,885 - +1.0 269,885 - -1.6 269,885 - -1.2 269,885 - -1.7 269,885 - -1.1 269,885 - +0.7 269,885 - +1.1 269,885 - -0.8 269,885 - -2.0 269,885 - -1.0 269,885 - -0.2 269,885 - -0.2 269,885 - -0.7 269,885 - +0.4 269,885 - -0.4 269,885 - +0.3 269,885 - -0.7 269,885 - -1.8 269,885 - -2.0 269,885 - +0.0
Or see this region's nucleotide sequence