Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06519

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06517 and MPMX19_06518 overlap by 20 nucleotidesMPMX19_06518 and MPMX19_06519 are separated by 31 nucleotidesMPMX19_06519 and MPMX19_06520 are separated by 204 nucleotides MPMX19_06517: MPMX19_06517 - Vitamin B12 import ATP-binding protein BtuD, at 302,578 to 303,696 _06517 MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333 _06518 MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084 _06519 MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131 _06520 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.676 kb on + strandat 303.676 kb on + strandat 303.701 kb on + strandat 303.702 kb on - strandat 303.815 kb on + strand, within MPMX19_06518at 303.816 kb on - strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.986 kb on + strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 303.987 kb on - strand, within MPMX19_06518at 304.218 kb on - strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.226 kb on + strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.227 kb on - strand, within MPMX19_06518at 304.367 kb on - strandat 304.399 kb on + strandat 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 304.597 kb on + strand, within MPMX19_06519at 305.050 kb on + strandat 305.050 kb on + strandat 305.177 kb on + strandat 305.178 kb on - strandat 305.178 kb on - strandat 305.403 kb on + strand, within MPMX19_06520at 305.404 kb on - strand, within MPMX19_06520at 305.595 kb on + strand, within MPMX19_06520at 305.595 kb on + strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.596 kb on - strand, within MPMX19_06520at 305.705 kb on + strand, within MPMX19_06520at 305.706 kb on - strand, within MPMX19_06520

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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303,676 + -0.1
303,676 + +0.0
303,701 + -3.1
303,702 - -0.0
303,815 + MPMX19_06518 0.21 +0.9
303,816 - MPMX19_06518 0.21 +0.1
303,986 + MPMX19_06518 0.47 +0.2
303,986 + MPMX19_06518 0.47 +0.8
303,986 + MPMX19_06518 0.47 -0.5
303,986 + MPMX19_06518 0.47 -0.5
303,986 + MPMX19_06518 0.47 -0.2
303,986 + MPMX19_06518 0.47 -0.5
303,986 + MPMX19_06518 0.47 -1.0
303,987 - MPMX19_06518 0.47 +0.9
303,987 - MPMX19_06518 0.47 -1.0
304,218 - MPMX19_06518 0.82 +2.0
304,226 + MPMX19_06518 0.84 -0.3
304,226 + MPMX19_06518 0.84 -0.6
304,227 - MPMX19_06518 0.84 -1.4
304,227 - MPMX19_06518 0.84 -0.4
304,227 - MPMX19_06518 0.84 +0.7
304,227 - MPMX19_06518 0.84 -0.9
304,227 - MPMX19_06518 0.84 +1.2
304,227 - MPMX19_06518 0.84 -0.3
304,367 - -0.6
304,399 + -1.0
304,597 + MPMX19_06519 0.32 -1.8
304,597 + MPMX19_06519 0.32 -0.6
304,597 + MPMX19_06519 0.32 +0.7
304,597 + MPMX19_06519 0.32 -0.8
305,050 + -1.4
305,050 + +0.1
305,177 + +0.7
305,178 - -0.1
305,178 - -1.0
305,403 + MPMX19_06520 0.14 +0.6
305,404 - MPMX19_06520 0.14 -2.2
305,595 + MPMX19_06520 0.36 -0.0
305,595 + MPMX19_06520 0.36 +0.3
305,596 - MPMX19_06520 0.36 -0.2
305,596 - MPMX19_06520 0.36 +0.5
305,596 - MPMX19_06520 0.36 +0.8
305,705 + MPMX19_06520 0.49 -1.4
305,706 - MPMX19_06520 0.49 -0.2

Or see this region's nucleotide sequence