Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06511

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06509 and MPMX19_06510 overlap by 4 nucleotidesMPMX19_06510 and MPMX19_06511 are separated by 88 nucleotidesMPMX19_06511 and MPMX19_06512 overlap by 1 nucleotides MPMX19_06509: MPMX19_06509 - Putative aliphatic sulfonates transport permease protein SsuC, at 293,545 to 294,420 _06509 MPMX19_06510: MPMX19_06510 - Aliphatic sulfonates import ATP-binding protein SsuB, at 294,417 to 295,142 _06510 MPMX19_06511: MPMX19_06511 - hypothetical protein, at 295,231 to 296,271 _06511 MPMX19_06512: MPMX19_06512 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 296,271 to 298,571 _06512 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.328 kb on + strand, within MPMX19_06509at 294.360 kb on - strandat 294.403 kb on + strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.404 kb on - strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.442 kb on + strandat 294.443 kb on - strandat 294.443 kb on - strandat 294.443 kb on - strandat 294.495 kb on + strand, within MPMX19_06510at 294.495 kb on + strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.496 kb on - strand, within MPMX19_06510at 294.712 kb on + strand, within MPMX19_06510at 294.712 kb on + strand, within MPMX19_06510at 295.346 kb on + strand, within MPMX19_06511at 295.347 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511at 295.396 kb on - strand, within MPMX19_06511at 295.640 kb on - strand, within MPMX19_06511at 295.808 kb on - strand, within MPMX19_06511at 295.808 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.904 kb on - strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.966 kb on + strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 295.967 kb on - strand, within MPMX19_06511at 296.313 kb on + strandat 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.602 kb on - strand, within MPMX19_06512at 296.677 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.679 kb on - strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.756 kb on + strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 296.757 kb on - strand, within MPMX19_06512at 297.099 kb on + strand, within MPMX19_06512at 297.099 kb on + strand, within MPMX19_06512at 297.100 kb on - strand, within MPMX19_06512at 297.100 kb on - strand, within MPMX19_06512

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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294,328 + MPMX19_06509 0.89 -1.0
294,328 + MPMX19_06509 0.89 -0.2
294,328 + MPMX19_06509 0.89 -0.7
294,328 + MPMX19_06509 0.89 -1.5
294,328 + MPMX19_06509 0.89 -1.2
294,328 + MPMX19_06509 0.89 -1.4
294,360 - -0.5
294,403 + -0.2
294,404 - -0.5
294,404 - -1.2
294,404 - -0.6
294,404 - -0.7
294,442 + +0.7
294,442 + -1.9
294,442 + -0.8
294,442 + -0.5
294,443 - +0.4
294,443 - -0.3
294,443 - +0.2
294,495 + MPMX19_06510 0.11 +0.7
294,495 + MPMX19_06510 0.11 +0.8
294,496 - MPMX19_06510 0.11 -0.2
294,496 - MPMX19_06510 0.11 +1.1
294,496 - MPMX19_06510 0.11 -1.0
294,496 - MPMX19_06510 0.11 -0.1
294,712 + MPMX19_06510 0.41 +0.1
294,712 + MPMX19_06510 0.41 -1.2
295,346 + MPMX19_06511 0.11 -0.8
295,347 - MPMX19_06511 0.11 +0.7
295,396 - MPMX19_06511 0.16 +0.8
295,396 - MPMX19_06511 0.16 -0.7
295,640 - MPMX19_06511 0.39 -0.1
295,808 - MPMX19_06511 0.55 +0.1
295,808 - MPMX19_06511 0.55 -1.2
295,904 - MPMX19_06511 0.65 -0.2
295,904 - MPMX19_06511 0.65 -0.5
295,904 - MPMX19_06511 0.65 -0.8
295,904 - MPMX19_06511 0.65 -0.5
295,904 - MPMX19_06511 0.65 +0.5
295,904 - MPMX19_06511 0.65 -1.4
295,966 + MPMX19_06511 0.71 -0.3
295,966 + MPMX19_06511 0.71 -0.2
295,966 + MPMX19_06511 0.71 -1.0
295,966 + MPMX19_06511 0.71 -1.2
295,966 + MPMX19_06511 0.71 -1.4
295,966 + MPMX19_06511 0.71 -0.4
295,966 + MPMX19_06511 0.71 -1.8
295,966 + MPMX19_06511 0.71 +0.1
295,966 + MPMX19_06511 0.71 -1.0
295,966 + MPMX19_06511 0.71 -1.0
295,967 - MPMX19_06511 0.71 +1.1
295,967 - MPMX19_06511 0.71 -1.5
295,967 - MPMX19_06511 0.71 -0.9
295,967 - MPMX19_06511 0.71 +0.0
295,967 - MPMX19_06511 0.71 +0.2
295,967 - MPMX19_06511 0.71 -0.2
295,967 - MPMX19_06511 0.71 -0.2
295,967 - MPMX19_06511 0.71 -0.3
295,967 - MPMX19_06511 0.71 -1.2
295,967 - MPMX19_06511 0.71 -0.7
295,967 - MPMX19_06511 0.71 -0.7
295,967 - MPMX19_06511 0.71 +0.6
295,967 - MPMX19_06511 0.71 -0.0
295,967 - MPMX19_06511 0.71 -0.0
296,313 + +0.2
296,602 - MPMX19_06512 0.14 -0.7
296,602 - MPMX19_06512 0.14 -0.2
296,602 - MPMX19_06512 0.14 -0.2
296,602 - MPMX19_06512 0.14 +0.8
296,677 - MPMX19_06512 0.18 -0.6
296,679 - MPMX19_06512 0.18 -0.5
296,679 - MPMX19_06512 0.18 -1.0
296,679 - MPMX19_06512 0.18 +0.3
296,756 + MPMX19_06512 0.21 -0.9
296,756 + MPMX19_06512 0.21 +0.3
296,756 + MPMX19_06512 0.21 +0.4
296,756 + MPMX19_06512 0.21 -0.7
296,756 + MPMX19_06512 0.21 -0.3
296,756 + MPMX19_06512 0.21 +2.6
296,756 + MPMX19_06512 0.21 +0.8
296,756 + MPMX19_06512 0.21 +2.1
296,756 + MPMX19_06512 0.21 -0.7
296,756 + MPMX19_06512 0.21 -1.2
296,756 + MPMX19_06512 0.21 +0.3
296,756 + MPMX19_06512 0.21 -0.7
296,756 + MPMX19_06512 0.21 -1.1
296,756 + MPMX19_06512 0.21 +0.2
296,756 + MPMX19_06512 0.21 -1.5
296,756 + MPMX19_06512 0.21 -1.9
296,756 + MPMX19_06512 0.21 +0.3
296,756 + MPMX19_06512 0.21 -1.0
296,756 + MPMX19_06512 0.21 +0.6
296,756 + MPMX19_06512 0.21 +1.5
296,756 + MPMX19_06512 0.21 +0.8
296,756 + MPMX19_06512 0.21 -0.5
296,756 + MPMX19_06512 0.21 -0.2
296,756 + MPMX19_06512 0.21 -0.8
296,756 + MPMX19_06512 0.21 -1.8
296,756 + MPMX19_06512 0.21 -1.3
296,756 + MPMX19_06512 0.21 +0.6
296,756 + MPMX19_06512 0.21 +1.0
296,756 + MPMX19_06512 0.21 -0.7
296,757 - MPMX19_06512 0.21 -1.9
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 -0.3
296,757 - MPMX19_06512 0.21 -0.8
296,757 - MPMX19_06512 0.21 +0.8
296,757 - MPMX19_06512 0.21 -0.0
296,757 - MPMX19_06512 0.21 +0.1
296,757 - MPMX19_06512 0.21 +0.0
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 +0.5
296,757 - MPMX19_06512 0.21 +0.4
296,757 - MPMX19_06512 0.21 -1.3
296,757 - MPMX19_06512 0.21 -0.1
296,757 - MPMX19_06512 0.21 +1.0
296,757 - MPMX19_06512 0.21 +1.2
296,757 - MPMX19_06512 0.21 -0.1
296,757 - MPMX19_06512 0.21 -1.0
296,757 - MPMX19_06512 0.21 +0.3
296,757 - MPMX19_06512 0.21 -0.3
296,757 - MPMX19_06512 0.21 -0.4
296,757 - MPMX19_06512 0.21 +0.2
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 -0.5
296,757 - MPMX19_06512 0.21 +0.8
296,757 - MPMX19_06512 0.21 -1.4
296,757 - MPMX19_06512 0.21 -1.0
296,757 - MPMX19_06512 0.21 -0.2
296,757 - MPMX19_06512 0.21 -0.1
297,099 + MPMX19_06512 0.36 +0.1
297,099 + MPMX19_06512 0.36 +0.8
297,100 - MPMX19_06512 0.36 -0.0
297,100 - MPMX19_06512 0.36 -1.1

Or see this region's nucleotide sequence