Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06472

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06470 and MPMX19_06471 are separated by 155 nucleotidesMPMX19_06471 and MPMX19_06472 are separated by 7 nucleotidesMPMX19_06472 and MPMX19_06473 are separated by 63 nucleotides MPMX19_06470: MPMX19_06470 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 254,040 to 254,825 _06470 MPMX19_06471: MPMX19_06471 - Glyoxylate/hydroxypyruvate reductase A, at 254,981 to 255,811 _06471 MPMX19_06472: MPMX19_06472 - Alkanesulfonate monooxygenase, at 255,819 to 256,943 _06472 MPMX19_06473: MPMX19_06473 - Putative aliphatic sulfonates-binding protein, at 257,007 to 258,020 _06473 Position (kb) 255 256 257Strain fitness (log2 ratio) -2 -1 0 1 2at 254.857 kb on + strandat 254.906 kb on - strandat 254.906 kb on - strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.173 kb on + strand, within MPMX19_06471at 255.173 kb on + strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.510 kb on - strand, within MPMX19_06471at 255.561 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471at 255.896 kb on - strandat 256.174 kb on + strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.182 kb on - strand, within MPMX19_06472at 256.230 kb on + strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.418 kb on - strand, within MPMX19_06472at 256.534 kb on + strand, within MPMX19_06472at 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.958 kb on + strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.959 kb on - strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.962 kb on + strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 256.963 kb on - strandat 257.001 kb on + strandat 257.103 kb on - strandat 257.103 kb on - strandat 257.348 kb on - strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.353 kb on + strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.354 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.432 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.552 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.555 kb on - strand, within MPMX19_06473at 257.578 kb on + strand, within MPMX19_06473at 257.579 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.656 kb on - strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.670 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473at 257.866 kb on + strand, within MPMX19_06473

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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254,857 + -0.1
254,906 - -1.2
254,906 - -0.0
255,003 + +0.1
255,003 + -1.5
255,003 + -1.6
255,003 + -0.9
255,003 + -0.8
255,003 + -0.7
255,003 + -0.2
255,003 + +1.2
255,003 + -1.7
255,003 + -0.4
255,004 - -0.8
255,004 - +0.3
255,004 - -0.3
255,004 - -1.9
255,004 - -0.5
255,004 - -0.4
255,004 - -1.5
255,004 - -0.5
255,173 + MPMX19_06471 0.23 +0.9
255,173 + MPMX19_06471 0.23 +1.0
255,174 - MPMX19_06471 0.23 +0.5
255,174 - MPMX19_06471 0.23 +0.3
255,486 + MPMX19_06471 0.61 -0.5
255,486 + MPMX19_06471 0.61 +0.4
255,486 + MPMX19_06471 0.61 +0.2
255,487 - MPMX19_06471 0.61 +0.1
255,487 - MPMX19_06471 0.61 -0.2
255,487 - MPMX19_06471 0.61 -0.0
255,510 - MPMX19_06471 0.64 +0.1
255,561 + MPMX19_06471 0.70 -1.4
255,577 + MPMX19_06471 0.72 -0.1
255,577 + MPMX19_06471 0.72 +0.2
255,896 - -1.8
256,174 + MPMX19_06472 0.32 -1.1
256,175 - MPMX19_06472 0.32 -1.5
256,175 - MPMX19_06472 0.32 +0.8
256,175 - MPMX19_06472 0.32 -0.8
256,182 - MPMX19_06472 0.32 -1.4
256,230 + MPMX19_06472 0.37 -1.3
256,231 - MPMX19_06472 0.37 -1.0
256,231 - MPMX19_06472 0.37 -1.0
256,231 - MPMX19_06472 0.37 -1.7
256,336 + MPMX19_06472 0.46 -1.5
256,336 + MPMX19_06472 0.46 +0.2
256,336 + MPMX19_06472 0.46 -0.1
256,336 + MPMX19_06472 0.46 -0.6
256,336 + MPMX19_06472 0.46 -0.3
256,336 + MPMX19_06472 0.46 +0.5
256,336 + MPMX19_06472 0.46 -0.3
256,337 - MPMX19_06472 0.46 +0.2
256,337 - MPMX19_06472 0.46 -1.5
256,337 - MPMX19_06472 0.46 -0.4
256,337 - MPMX19_06472 0.46 -1.2
256,337 - MPMX19_06472 0.46 +0.8
256,418 - MPMX19_06472 0.53 -0.3
256,534 + MPMX19_06472 0.64 -0.6
256,958 + -0.4
256,958 + -0.1
256,958 + -0.9
256,958 + -0.2
256,958 + -1.1
256,958 + +0.4
256,958 + -0.7
256,958 + -1.3
256,958 + +0.1
256,958 + +0.1
256,959 - +0.6
256,959 - -0.7
256,959 - -0.9
256,959 - -0.8
256,959 - -0.3
256,959 - -0.6
256,959 - -0.0
256,962 + -0.8
256,962 + -0.5
256,962 + -0.6
256,962 + -1.3
256,963 - -0.7
256,963 - -0.4
256,963 - -1.4
256,963 - +0.5
256,963 - -0.5
256,963 - -0.2
257,001 + +0.2
257,103 - -1.3
257,103 - -0.2
257,348 - MPMX19_06473 0.34 -0.8
257,353 + MPMX19_06473 0.34 +0.2
257,353 + MPMX19_06473 0.34 +0.5
257,353 + MPMX19_06473 0.34 -1.4
257,353 + MPMX19_06473 0.34 -1.1
257,353 + MPMX19_06473 0.34 -0.9
257,354 - MPMX19_06473 0.34 +0.2
257,354 - MPMX19_06473 0.34 +0.2
257,354 - MPMX19_06473 0.34 +0.6
257,354 - MPMX19_06473 0.34 -0.1
257,354 - MPMX19_06473 0.34 +0.2
257,354 - MPMX19_06473 0.34 -0.7
257,354 - MPMX19_06473 0.34 +0.1
257,354 - MPMX19_06473 0.34 -0.2
257,354 - MPMX19_06473 0.34 +2.1
257,432 - MPMX19_06473 0.42 -0.2
257,432 - MPMX19_06473 0.42 +0.2
257,432 - MPMX19_06473 0.42 -0.7
257,432 - MPMX19_06473 0.42 +0.5
257,432 - MPMX19_06473 0.42 -0.2
257,552 - MPMX19_06473 0.54 +0.8
257,552 - MPMX19_06473 0.54 -0.9
257,552 - MPMX19_06473 0.54 -1.7
257,552 - MPMX19_06473 0.54 +1.0
257,552 - MPMX19_06473 0.54 -0.6
257,552 - MPMX19_06473 0.54 +0.5
257,552 - MPMX19_06473 0.54 -0.7
257,552 - MPMX19_06473 0.54 -1.0
257,552 - MPMX19_06473 0.54 -0.3
257,552 - MPMX19_06473 0.54 -0.8
257,552 - MPMX19_06473 0.54 -0.3
257,555 - MPMX19_06473 0.54 +0.0
257,555 - MPMX19_06473 0.54 -0.5
257,555 - MPMX19_06473 0.54 +0.8
257,555 - MPMX19_06473 0.54 -0.4
257,555 - MPMX19_06473 0.54 -1.9
257,555 - MPMX19_06473 0.54 -1.8
257,578 + MPMX19_06473 0.56 -0.6
257,579 - MPMX19_06473 0.56 +0.2
257,656 - MPMX19_06473 0.64 -0.2
257,656 - MPMX19_06473 0.64 -0.5
257,656 - MPMX19_06473 0.64 +0.6
257,670 + MPMX19_06473 0.65 -0.9
257,670 + MPMX19_06473 0.65 -1.0
257,866 + MPMX19_06473 0.85 -0.5
257,866 + MPMX19_06473 0.85 -0.0
257,866 + MPMX19_06473 0.85 -0.7
257,866 + MPMX19_06473 0.85 -0.5
257,866 + MPMX19_06473 0.85 -0.9

Or see this region's nucleotide sequence