Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06460 and MPMX19_06461 overlap by 1 nucleotides
MPMX19_06460: MPMX19_06460 - DNA-invertase hin, at 241,947 to 242,504
_06460
MPMX19_06461: MPMX19_06461 - Tn3 family transposase ISXc4, at 242,504 to 245,506
_06461
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.991 kb on - strand at 241.011 kb on - strand at 241.040 kb on + strand at 241.040 kb on + strand at 241.041 kb on - strand at 241.055 kb on - strand at 241.115 kb on + strand at 241.116 kb on - strand at 241.116 kb on - strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.117 kb on + strand at 241.118 kb on - strand at 241.220 kb on + strand at 241.221 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.273 kb on - strand at 241.291 kb on + strand at 241.291 kb on + strand at 241.292 kb on - strand at 241.302 kb on + strand at 241.303 kb on - strand at 241.303 kb on - strand at 241.316 kb on - strand at 241.417 kb on + strand at 241.417 kb on + strand at 241.442 kb on + strand at 241.481 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.499 kb on + strand at 241.500 kb on - strand at 241.579 kb on - strand at 241.617 kb on + strand at 241.638 kb on - strand at 241.638 kb on - strand at 241.829 kb on + strand at 241.829 kb on + strand at 241.830 kb on - strand at 241.834 kb on - strand at 241.834 kb on - strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.837 kb on + strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.838 kb on - strand at 241.839 kb on + strand at 241.839 kb on + strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.840 kb on - strand at 241.850 kb on + strand at 241.850 kb on + strand at 241.851 kb on - strand at 241.870 kb on - strand at 241.870 kb on - strand at 241.899 kb on - strand at 241.911 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.926 kb on + strand at 241.927 kb on - strand at 241.946 kb on + strand at 241.946 kb on + strand at 241.947 kb on - strand at 241.947 kb on - strand at 241.954 kb on + strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.955 kb on - strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.956 kb on + strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 242.014 kb on + strand, within MPMX19_06460 at 242.014 kb on + strand, within MPMX19_06460 at 242.015 kb on - strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.358 kb on + strand, within MPMX19_06460 at 242.359 kb on - strand, within MPMX19_06460 at 242.472 kb on + strand at 242.472 kb on + strand at 242.472 kb on + strand at 242.473 kb on - strand at 242.588 kb on + strand at 242.589 kb on - strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.786 kb on + strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.787 kb on - strand at 242.837 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.894 kb on + strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 242.895 kb on - strand, within MPMX19_06461 at 243.022 kb on + strand, within MPMX19_06461 at 243.023 kb on - strand, within MPMX19_06461 at 243.335 kb on - strand, within MPMX19_06461
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 240,991 - +0.6 241,011 - +0.7 241,040 + +0.3 241,040 + -0.8 241,041 - +0.8 241,055 - -1.1 241,115 + -0.4 241,116 - -0.5 241,116 - +0.3 241,117 + -1.4 241,117 + -0.9 241,117 + -1.9 241,117 + +0.1 241,118 - +0.3 241,220 + -0.8 241,221 - -0.2 241,273 - -0.2 241,273 - -0.8 241,273 - -0.9 241,273 - +0.2 241,273 - -0.2 241,291 + -0.5 241,291 + +0.2 241,292 - +1.8 241,302 + -2.2 241,303 - -1.2 241,303 - -2.5 241,316 - -0.4 241,417 + -0.2 241,417 + +1.1 241,442 + +0.8 241,481 + +0.1 241,499 + -1.1 241,499 + -0.2 241,499 + +0.3 241,499 + +0.2 241,500 - -0.0 241,579 - -1.0 241,617 + -0.5 241,638 - +0.1 241,638 - -0.5 241,829 + +1.4 241,829 + -1.5 241,830 - +2.1 241,834 - +1.1 241,834 - -0.4 241,837 + +0.4 241,837 + +0.7 241,837 + -0.5 241,837 + -0.9 241,837 + +0.2 241,837 + +1.2 241,837 + +1.7 241,837 + +0.1 241,837 + -0.0 241,837 + +0.5 241,837 + -0.4 241,838 - -1.3 241,838 - +0.8 241,838 - -1.0 241,838 - +0.1 241,838 - +0.2 241,838 - -0.4 241,838 - -1.2 241,838 - -1.7 241,838 - +0.7 241,838 - +0.4 241,838 - +0.3 241,838 - -0.5 241,838 - +0.0 241,839 + +0.5 241,839 + -0.9 241,840 - +1.1 241,840 - -1.0 241,840 - +0.6 241,840 - +0.5 241,840 - -3.2 241,840 - +0.5 241,840 - -0.5 241,840 - -0.7 241,840 - +0.5 241,850 + -1.2 241,850 + -1.8 241,851 - -0.5 241,870 - -0.5 241,870 - -0.4 241,899 - +0.8 241,911 + +1.4 241,926 + -1.6 241,926 + +0.8 241,926 + +0.3 241,926 + -1.8 241,926 + -0.1 241,927 - +0.8 241,946 + -0.2 241,946 + -0.4 241,947 - +1.1 241,947 - -0.5 241,954 + -2.2 241,955 - -1.1 241,955 - -0.5 241,955 - -1.0 241,956 + -0.4 241,956 + -2.0 241,956 + -0.2 241,956 + +1.1 241,956 + +0.5 241,956 + +0.8 241,956 + -0.1 241,956 + -0.3 241,956 + -0.2 241,956 + +1.2 241,956 + +1.1 241,956 + -1.0 241,956 + -2.0 241,957 - +0.8 241,957 - +0.1 241,957 - -0.4 241,957 - -0.3 241,957 - -1.1 241,957 - +0.3 241,957 - +1.4 241,957 - -0.0 241,957 - +0.8 241,957 - -0.5 241,957 - +0.6 241,957 - +0.2 241,957 - +0.1 241,957 - +0.4 241,957 - +0.8 241,957 - -0.4 241,957 - +0.2 241,957 - +0.1 241,957 - -0.7 241,957 - -0.4 241,957 - +0.0 242,014 + MPMX19_06460 0.12 -0.9 242,014 + MPMX19_06460 0.12 -1.0 242,015 - MPMX19_06460 0.12 +0.5 242,358 + MPMX19_06460 0.74 -0.5 242,358 + MPMX19_06460 0.74 +0.2 242,358 + MPMX19_06460 0.74 -0.2 242,358 + MPMX19_06460 0.74 -0.9 242,358 + MPMX19_06460 0.74 -1.2 242,359 - MPMX19_06460 0.74 -0.5 242,472 + -0.7 242,472 + -0.7 242,472 + -1.1 242,473 - +1.3 242,588 + -0.1 242,589 - -1.5 242,786 + -0.2 242,786 + +0.1 242,786 + -0.2 242,786 + -0.2 242,786 + +0.2 242,786 + +0.3 242,786 + -0.0 242,786 + -1.5 242,786 + -1.2 242,786 + -0.6 242,786 + +2.8 242,786 + -0.1 242,786 + +0.6 242,786 + -1.2 242,787 - +0.2 242,787 - +0.0 242,787 - -2.1 242,787 - -0.5 242,787 - +0.4 242,787 - -0.6 242,837 + MPMX19_06461 0.11 -0.8 242,894 + MPMX19_06461 0.13 -2.0 242,894 + MPMX19_06461 0.13 +0.5 242,894 + MPMX19_06461 0.13 +0.1 242,894 + MPMX19_06461 0.13 -1.7 242,894 + MPMX19_06461 0.13 -1.0 242,895 - MPMX19_06461 0.13 +1.2 242,895 - MPMX19_06461 0.13 -2.0 242,895 - MPMX19_06461 0.13 -0.9 242,895 - MPMX19_06461 0.13 -0.8 242,895 - MPMX19_06461 0.13 -0.5 242,895 - MPMX19_06461 0.13 +0.6 242,895 - MPMX19_06461 0.13 +0.9 242,895 - MPMX19_06461 0.13 -0.5 242,895 - MPMX19_06461 0.13 -1.0 243,022 + MPMX19_06461 0.17 +0.2 243,023 - MPMX19_06461 0.17 +0.5 243,335 - MPMX19_06461 0.28 -1.4
Or see this region's nucleotide sequence