Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06458 and MPMX19_06459 are separated by 264 nucleotides
MPMX19_06458: MPMX19_06458 - hypothetical protein, at 234,166 to 238,191
_06458
MPMX19_06459: MPMX19_06459 - hypothetical protein, at 238,456 to 239,355
_06459
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.638 kb on + strand, within MPMX19_06458 at 237.638 kb on + strand, within MPMX19_06458 at 237.639 kb on - strand, within MPMX19_06458 at 237.639 kb on - strand, within MPMX19_06458 at 237.639 kb on - strand, within MPMX19_06458 at 237.639 kb on - strand, within MPMX19_06458 at 237.639 kb on - strand, within MPMX19_06458 at 237.812 kb on - strand at 237.812 kb on - strand at 237.812 kb on - strand at 237.812 kb on - strand at 237.812 kb on - strand at 238.010 kb on + strand at 238.011 kb on - strand at 238.011 kb on - strand at 238.011 kb on - strand at 238.133 kb on + strand at 238.133 kb on + strand at 238.134 kb on - strand at 238.215 kb on + strand at 238.216 kb on - strand at 238.216 kb on - strand at 238.220 kb on + strand at 238.221 kb on - strand at 238.232 kb on - strand at 238.232 kb on - strand at 238.232 kb on - strand at 238.303 kb on + strand at 238.303 kb on + strand at 238.304 kb on - strand at 238.412 kb on + strand at 238.412 kb on + strand at 238.412 kb on + strand at 238.412 kb on + strand at 238.412 kb on + strand at 238.413 kb on - strand at 238.413 kb on - strand at 238.413 kb on - strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.474 kb on + strand at 238.475 kb on - strand at 238.475 kb on - strand at 238.475 kb on - strand at 238.475 kb on - strand at 238.475 kb on - strand at 238.835 kb on + strand, within MPMX19_06459 at 238.835 kb on + strand, within MPMX19_06459 at 238.835 kb on + strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.836 kb on - strand, within MPMX19_06459 at 238.995 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.042 kb on + strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.043 kb on - strand, within MPMX19_06459 at 239.107 kb on - strand, within MPMX19_06459 at 239.120 kb on + strand, within MPMX19_06459 at 239.183 kb on + strand, within MPMX19_06459 at 239.183 kb on + strand, within MPMX19_06459 at 239.184 kb on - strand, within MPMX19_06459 at 239.184 kb on - strand, within MPMX19_06459 at 239.184 kb on - strand, within MPMX19_06459 at 239.184 kb on - strand, within MPMX19_06459 at 239.184 kb on - strand, within MPMX19_06459 at 239.342 kb on + strand at 239.342 kb on + strand at 239.343 kb on - strand at 239.343 kb on - strand at 239.437 kb on + strand at 239.437 kb on + strand at 239.437 kb on + strand at 239.437 kb on + strand at 239.438 kb on - strand at 239.438 kb on - strand at 239.497 kb on - strand at 239.497 kb on - strand at 239.639 kb on + strand at 239.639 kb on + strand at 239.639 kb on + strand at 239.640 kb on - strand at 239.704 kb on + strand at 239.704 kb on + strand at 239.704 kb on + strand at 239.704 kb on + strand at 239.705 kb on - strand at 239.705 kb on - strand at 239.705 kb on - strand at 239.705 kb on - strand at 239.726 kb on - strand at 239.739 kb on + strand at 239.739 kb on + strand at 239.740 kb on - strand at 239.850 kb on + strand at 239.902 kb on + strand at 239.902 kb on + strand at 239.902 kb on + strand at 239.902 kb on + strand at 239.903 kb on - strand at 239.903 kb on - strand at 239.903 kb on - strand at 239.903 kb on - strand at 239.903 kb on - strand at 240.007 kb on + strand at 240.007 kb on + strand at 240.007 kb on + strand at 240.008 kb on - strand at 240.008 kb on - strand at 240.008 kb on - strand at 240.008 kb on - strand at 240.008 kb on - strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.077 kb on + strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.078 kb on - strand at 240.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 237,638 + MPMX19_06458 0.86 -0.9 237,638 + MPMX19_06458 0.86 +0.5 237,639 - MPMX19_06458 0.86 -2.1 237,639 - MPMX19_06458 0.86 -0.5 237,639 - MPMX19_06458 0.86 -0.0 237,639 - MPMX19_06458 0.86 -0.2 237,639 - MPMX19_06458 0.86 +0.3 237,812 - +0.2 237,812 - -0.7 237,812 - -0.7 237,812 - +0.4 237,812 - -1.3 238,010 + -1.1 238,011 - -1.2 238,011 - +0.0 238,011 - -0.5 238,133 + +1.1 238,133 + -0.2 238,134 - -0.7 238,215 + -0.7 238,216 - -1.8 238,216 - +0.6 238,220 + -0.3 238,221 - -0.7 238,232 - -1.3 238,232 - -1.1 238,232 - +0.3 238,303 + -1.0 238,303 + +0.5 238,304 - -0.4 238,412 + -0.8 238,412 + +0.1 238,412 + +0.6 238,412 + -1.1 238,412 + +1.1 238,413 - +0.2 238,413 - -1.3 238,413 - +0.0 238,474 + -1.8 238,474 + +1.1 238,474 + -0.4 238,474 + -0.7 238,474 + -0.5 238,475 - +0.2 238,475 - +0.2 238,475 - +0.4 238,475 - -0.9 238,475 - +2.4 238,835 + MPMX19_06459 0.42 -0.9 238,835 + MPMX19_06459 0.42 -1.4 238,835 + MPMX19_06459 0.42 +0.6 238,836 - MPMX19_06459 0.42 -1.5 238,836 - MPMX19_06459 0.42 -0.2 238,836 - MPMX19_06459 0.42 +1.8 238,836 - MPMX19_06459 0.42 +0.0 238,836 - MPMX19_06459 0.42 -0.9 238,836 - MPMX19_06459 0.42 -0.8 238,836 - MPMX19_06459 0.42 -0.7 238,836 - MPMX19_06459 0.42 -1.7 238,995 + MPMX19_06459 0.60 +0.1 239,042 + MPMX19_06459 0.65 -1.5 239,042 + MPMX19_06459 0.65 +0.2 239,042 + MPMX19_06459 0.65 +0.1 239,042 + MPMX19_06459 0.65 -1.6 239,042 + MPMX19_06459 0.65 -0.0 239,042 + MPMX19_06459 0.65 -0.7 239,043 - MPMX19_06459 0.65 -0.2 239,043 - MPMX19_06459 0.65 -1.0 239,043 - MPMX19_06459 0.65 +1.5 239,043 - MPMX19_06459 0.65 +0.8 239,043 - MPMX19_06459 0.65 +0.2 239,043 - MPMX19_06459 0.65 -1.2 239,043 - MPMX19_06459 0.65 +0.3 239,107 - MPMX19_06459 0.72 -1.4 239,120 + MPMX19_06459 0.74 +0.7 239,183 + MPMX19_06459 0.81 +0.5 239,183 + MPMX19_06459 0.81 +1.1 239,184 - MPMX19_06459 0.81 -1.7 239,184 - MPMX19_06459 0.81 -0.1 239,184 - MPMX19_06459 0.81 -0.1 239,184 - MPMX19_06459 0.81 -0.2 239,184 - MPMX19_06459 0.81 +0.1 239,342 + +0.7 239,342 + -0.6 239,343 - +0.3 239,343 - +1.2 239,437 + -0.1 239,437 + -0.9 239,437 + -0.7 239,437 + -0.1 239,438 - -0.5 239,438 - +0.6 239,497 - -1.3 239,497 - +0.6 239,639 + -0.1 239,639 + +0.5 239,639 + -1.5 239,640 - -0.0 239,704 + +0.3 239,704 + -0.6 239,704 + +0.5 239,704 + +1.0 239,705 - -1.7 239,705 - -0.1 239,705 - -0.5 239,705 - -1.2 239,726 - +0.5 239,739 + -1.2 239,739 + -0.8 239,740 - +0.5 239,850 + -1.5 239,902 + +0.6 239,902 + +0.0 239,902 + -1.0 239,902 + -1.5 239,903 - -1.7 239,903 - -0.2 239,903 - -0.3 239,903 - -0.0 239,903 - -1.2 240,007 + +1.8 240,007 + -0.5 240,007 + -0.7 240,008 - -0.5 240,008 - -1.0 240,008 - +0.5 240,008 - -1.9 240,008 - -1.0 240,077 + +1.8 240,077 + +1.4 240,077 + -1.4 240,077 + +0.2 240,077 + -0.1 240,077 + +0.1 240,077 + +1.8 240,077 + +0.2 240,077 + -1.5 240,077 + -1.2 240,077 + -0.2 240,077 + +2.1 240,077 + -0.3 240,077 + +0.1 240,077 + -1.7 240,077 + -0.2 240,077 + +1.5 240,077 + +0.7 240,077 + +0.0 240,077 + +0.1 240,077 + -0.4 240,077 + -1.2 240,077 + -1.7 240,077 + +0.2 240,077 + -0.7 240,077 + +0.6 240,078 - +1.1 240,078 - -0.4 240,078 - -0.2 240,078 - -1.2 240,078 - -0.2 240,078 - -0.1 240,078 - -1.0 240,078 - +0.5 240,078 - -0.6 240,078 - -1.1 240,078 - -0.7 240,078 - +0.2 240,078 - -0.7 240,078 - +0.3 240,078 - -0.0 240,078 - -1.3 240,078 - +0.0 240,078 - -0.6 240,078 - +0.3 240,078 - -1.2 240,078 - -0.4 240,078 - +1.0 240,325 - +0.5
Or see this region's nucleotide sequence