Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06398 and MPMX19_06399 are separated by 153 nucleotides MPMX19_06399 and MPMX19_06400 are separated by 8 nucleotides
MPMX19_06398: MPMX19_06398 - Silver exporting P-type ATPase, at 162,431 to 164,830
_06398
MPMX19_06399: MPMX19_06399 - hypothetical protein, at 164,984 to 165,451
_06399
MPMX19_06400: MPMX19_06400 - Protease HtpX, at 165,460 to 166,422
_06400
Position (kb) 164
165
166 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.082 kb on + strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.083 kb on - strand, within MPMX19_06398 at 164.086 kb on - strand, within MPMX19_06398 at 164.086 kb on - strand, within MPMX19_06398 at 164.166 kb on + strand, within MPMX19_06398 at 164.166 kb on + strand, within MPMX19_06398 at 164.166 kb on + strand, within MPMX19_06398 at 164.167 kb on - strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.538 kb on + strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.539 kb on - strand, within MPMX19_06398 at 164.610 kb on + strand at 164.610 kb on + strand at 164.610 kb on + strand at 164.610 kb on + strand at 164.611 kb on - strand at 164.611 kb on - strand at 164.611 kb on - strand at 164.611 kb on - strand at 164.611 kb on - strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.746 kb on + strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 164.747 kb on - strand at 165.120 kb on + strand, within MPMX19_06399 at 165.120 kb on + strand, within MPMX19_06399 at 165.121 kb on - strand, within MPMX19_06399 at 165.121 kb on - strand, within MPMX19_06399 at 165.121 kb on - strand, within MPMX19_06399 at 165.193 kb on + strand, within MPMX19_06399 at 165.193 kb on + strand, within MPMX19_06399 at 165.194 kb on - strand, within MPMX19_06399 at 165.194 kb on - strand, within MPMX19_06399 at 165.194 kb on - strand, within MPMX19_06399 at 165.224 kb on + strand, within MPMX19_06399 at 165.225 kb on - strand, within MPMX19_06399 at 165.439 kb on + strand at 165.439 kb on + strand at 165.439 kb on + strand at 165.439 kb on + strand at 165.519 kb on + strand at 165.519 kb on + strand at 165.519 kb on + strand at 165.519 kb on + strand at 165.519 kb on + strand at 165.520 kb on - strand at 165.520 kb on - strand at 165.520 kb on - strand at 165.520 kb on - strand at 165.564 kb on + strand, within MPMX19_06400 at 165.564 kb on + strand, within MPMX19_06400 at 165.565 kb on - strand, within MPMX19_06400 at 165.565 kb on - strand, within MPMX19_06400 at 165.565 kb on - strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.663 kb on + strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.664 kb on - strand, within MPMX19_06400 at 165.686 kb on + strand, within MPMX19_06400 at 165.915 kb on + strand, within MPMX19_06400 at 165.915 kb on + strand, within MPMX19_06400 at 165.916 kb on - strand, within MPMX19_06400 at 165.916 kb on - strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.936 kb on + strand, within MPMX19_06400 at 165.937 kb on - strand, within MPMX19_06400 at 165.937 kb on - strand, within MPMX19_06400 at 165.937 kb on - strand, within MPMX19_06400 at 165.937 kb on - strand, within MPMX19_06400 at 166.056 kb on + strand, within MPMX19_06400 at 166.056 kb on + strand, within MPMX19_06400 at 166.056 kb on + strand, within MPMX19_06400 at 166.057 kb on - strand, within MPMX19_06400 at 166.057 kb on - strand, within MPMX19_06400 at 166.112 kb on + strand, within MPMX19_06400 at 166.112 kb on + strand, within MPMX19_06400 at 166.113 kb on - strand, within MPMX19_06400 at 166.113 kb on - strand, within MPMX19_06400 at 166.113 kb on - strand, within MPMX19_06400 at 166.156 kb on + strand, within MPMX19_06400 at 166.214 kb on + strand, within MPMX19_06400 at 166.215 kb on - strand, within MPMX19_06400 at 166.258 kb on + strand, within MPMX19_06400 at 166.258 kb on + strand, within MPMX19_06400 at 166.258 kb on + strand, within MPMX19_06400
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 164,082 + MPMX19_06398 0.69 -4.0 164,082 + MPMX19_06398 0.69 +0.6 164,082 + MPMX19_06398 0.69 -0.3 164,082 + MPMX19_06398 0.69 -0.0 164,082 + MPMX19_06398 0.69 -1.4 164,082 + MPMX19_06398 0.69 +0.7 164,082 + MPMX19_06398 0.69 +0.5 164,082 + MPMX19_06398 0.69 -1.9 164,083 - MPMX19_06398 0.69 +1.0 164,083 - MPMX19_06398 0.69 -0.0 164,083 - MPMX19_06398 0.69 -0.3 164,083 - MPMX19_06398 0.69 -0.2 164,083 - MPMX19_06398 0.69 -0.8 164,083 - MPMX19_06398 0.69 -0.0 164,083 - MPMX19_06398 0.69 -0.7 164,083 - MPMX19_06398 0.69 +0.1 164,083 - MPMX19_06398 0.69 -0.9 164,083 - MPMX19_06398 0.69 -0.9 164,086 - MPMX19_06398 0.69 -0.4 164,086 - MPMX19_06398 0.69 -0.5 164,166 + MPMX19_06398 0.72 +0.3 164,166 + MPMX19_06398 0.72 -0.7 164,166 + MPMX19_06398 0.72 -0.3 164,167 - MPMX19_06398 0.72 +0.5 164,538 + MPMX19_06398 0.88 +0.3 164,538 + MPMX19_06398 0.88 -0.1 164,538 + MPMX19_06398 0.88 -0.5 164,538 + MPMX19_06398 0.88 -0.8 164,538 + MPMX19_06398 0.88 +1.3 164,538 + MPMX19_06398 0.88 +0.8 164,538 + MPMX19_06398 0.88 +0.4 164,538 + MPMX19_06398 0.88 -0.2 164,538 + MPMX19_06398 0.88 +0.3 164,538 + MPMX19_06398 0.88 -0.6 164,538 + MPMX19_06398 0.88 +0.2 164,538 + MPMX19_06398 0.88 -1.3 164,538 + MPMX19_06398 0.88 -0.0 164,538 + MPMX19_06398 0.88 +0.5 164,538 + MPMX19_06398 0.88 -1.5 164,538 + MPMX19_06398 0.88 -0.6 164,538 + MPMX19_06398 0.88 +2.6 164,539 - MPMX19_06398 0.88 -0.4 164,539 - MPMX19_06398 0.88 +0.1 164,539 - MPMX19_06398 0.88 -1.0 164,539 - MPMX19_06398 0.88 -0.7 164,539 - MPMX19_06398 0.88 -0.0 164,539 - MPMX19_06398 0.88 -0.9 164,539 - MPMX19_06398 0.88 +0.1 164,539 - MPMX19_06398 0.88 -1.4 164,539 - MPMX19_06398 0.88 -0.4 164,539 - MPMX19_06398 0.88 -0.9 164,539 - MPMX19_06398 0.88 +0.7 164,539 - MPMX19_06398 0.88 -1.9 164,539 - MPMX19_06398 0.88 +0.5 164,539 - MPMX19_06398 0.88 +0.3 164,539 - MPMX19_06398 0.88 -1.9 164,539 - MPMX19_06398 0.88 -1.0 164,610 + +0.1 164,610 + -0.0 164,610 + -2.6 164,610 + -2.9 164,611 - -1.2 164,611 - -0.7 164,611 - -0.8 164,611 - +0.4 164,611 - -1.6 164,746 + -1.4 164,746 + +0.8 164,746 + -1.0 164,746 + +0.5 164,746 + -1.0 164,746 + -1.2 164,746 + +0.1 164,746 + -0.2 164,746 + +0.6 164,746 + +0.6 164,746 + +1.2 164,746 + -0.3 164,746 + -0.9 164,746 + -0.5 164,746 + +0.6 164,746 + -0.7 164,746 + -0.9 164,746 + +1.5 164,746 + +0.5 164,746 + -1.4 164,746 + +0.2 164,747 - -1.5 164,747 - +0.5 164,747 - +0.1 164,747 - +0.0 164,747 - -1.0 164,747 - +1.1 164,747 - -1.8 164,747 - -0.0 164,747 - +1.3 164,747 - +0.2 164,747 - +0.2 164,747 - +0.4 164,747 - -1.2 164,747 - -1.0 164,747 - -0.3 165,120 + MPMX19_06399 0.29 -1.9 165,120 + MPMX19_06399 0.29 -0.1 165,121 - MPMX19_06399 0.29 -0.5 165,121 - MPMX19_06399 0.29 -0.9 165,121 - MPMX19_06399 0.29 -1.9 165,193 + MPMX19_06399 0.45 -1.4 165,193 + MPMX19_06399 0.45 +0.8 165,194 - MPMX19_06399 0.45 -0.8 165,194 - MPMX19_06399 0.45 -0.3 165,194 - MPMX19_06399 0.45 +0.8 165,224 + MPMX19_06399 0.51 -0.8 165,225 - MPMX19_06399 0.51 -1.8 165,439 + -1.1 165,439 + -0.7 165,439 + -1.7 165,439 + -1.5 165,519 + +1.1 165,519 + -0.9 165,519 + +1.4 165,519 + +0.2 165,519 + -1.7 165,520 - -0.7 165,520 - -0.6 165,520 - +0.4 165,520 - -0.0 165,564 + MPMX19_06400 0.11 +1.4 165,564 + MPMX19_06400 0.11 -1.6 165,565 - MPMX19_06400 0.11 -0.9 165,565 - MPMX19_06400 0.11 -1.8 165,565 - MPMX19_06400 0.11 -1.7 165,663 + MPMX19_06400 0.21 -0.8 165,663 + MPMX19_06400 0.21 -0.6 165,663 + MPMX19_06400 0.21 +0.6 165,663 + MPMX19_06400 0.21 -0.5 165,663 + MPMX19_06400 0.21 +0.1 165,663 + MPMX19_06400 0.21 +0.6 165,663 + MPMX19_06400 0.21 +0.5 165,663 + MPMX19_06400 0.21 -0.2 165,663 + MPMX19_06400 0.21 +0.5 165,663 + MPMX19_06400 0.21 +0.2 165,663 + MPMX19_06400 0.21 -0.3 165,663 + MPMX19_06400 0.21 +0.8 165,663 + MPMX19_06400 0.21 +0.3 165,663 + MPMX19_06400 0.21 -0.5 165,663 + MPMX19_06400 0.21 +1.1 165,663 + MPMX19_06400 0.21 -0.7 165,664 - MPMX19_06400 0.21 -1.4 165,664 - MPMX19_06400 0.21 -0.7 165,664 - MPMX19_06400 0.21 -0.0 165,664 - MPMX19_06400 0.21 -0.1 165,664 - MPMX19_06400 0.21 -0.4 165,664 - MPMX19_06400 0.21 -0.0 165,664 - MPMX19_06400 0.21 +0.2 165,664 - MPMX19_06400 0.21 +2.1 165,664 - MPMX19_06400 0.21 -1.8 165,664 - MPMX19_06400 0.21 -0.2 165,664 - MPMX19_06400 0.21 +0.2 165,664 - MPMX19_06400 0.21 -1.2 165,664 - MPMX19_06400 0.21 +1.4 165,664 - MPMX19_06400 0.21 -0.1 165,664 - MPMX19_06400 0.21 +0.8 165,664 - MPMX19_06400 0.21 +1.0 165,686 + MPMX19_06400 0.23 -0.8 165,915 + MPMX19_06400 0.47 -0.2 165,915 + MPMX19_06400 0.47 +0.4 165,916 - MPMX19_06400 0.47 +0.5 165,916 - MPMX19_06400 0.47 -1.4 165,936 + MPMX19_06400 0.49 +0.2 165,936 + MPMX19_06400 0.49 -0.2 165,936 + MPMX19_06400 0.49 -2.7 165,936 + MPMX19_06400 0.49 -0.6 165,936 + MPMX19_06400 0.49 +0.9 165,936 + MPMX19_06400 0.49 -0.1 165,937 - MPMX19_06400 0.50 +0.2 165,937 - MPMX19_06400 0.50 -0.1 165,937 - MPMX19_06400 0.50 +0.5 165,937 - MPMX19_06400 0.50 +1.1 166,056 + MPMX19_06400 0.62 -1.4 166,056 + MPMX19_06400 0.62 -0.5 166,056 + MPMX19_06400 0.62 +0.5 166,057 - MPMX19_06400 0.62 -0.3 166,057 - MPMX19_06400 0.62 -0.0 166,112 + MPMX19_06400 0.68 +0.8 166,112 + MPMX19_06400 0.68 -0.8 166,113 - MPMX19_06400 0.68 -0.1 166,113 - MPMX19_06400 0.68 -0.3 166,113 - MPMX19_06400 0.68 -1.0 166,156 + MPMX19_06400 0.72 -1.7 166,214 + MPMX19_06400 0.78 -0.8 166,215 - MPMX19_06400 0.78 +0.8 166,258 + MPMX19_06400 0.83 -0.8 166,258 + MPMX19_06400 0.83 +1.1 166,258 + MPMX19_06400 0.83 +0.8
Or see this region's nucleotide sequence