Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06395

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06393 and MPMX19_06394 are separated by 18 nucleotidesMPMX19_06394 and MPMX19_06395 are separated by 68 nucleotidesMPMX19_06395 and MPMX19_06396 are separated by 31 nucleotidesMPMX19_06396 and MPMX19_06397 are separated by 16 nucleotides MPMX19_06393: MPMX19_06393 - hypothetical protein, at 159,154 to 159,882 _06393 MPMX19_06394: MPMX19_06394 - hypothetical protein, at 159,901 to 160,572 _06394 MPMX19_06395: MPMX19_06395 - Inner membrane protein YqaA, at 160,641 to 161,066 _06395 MPMX19_06396: MPMX19_06396 - hypothetical protein, at 161,098 to 161,571 _06396 MPMX19_06397: MPMX19_06397 - hypothetical protein, at 161,588 to 162,355 _06397 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.851 kb on - strandat 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.546 kb on + strandat 160.546 kb on + strandat 160.546 kb on + strandat 160.546 kb on + strandat 160.547 kb on - strandat 160.702 kb on + strand, within MPMX19_06395at 160.703 kb on - strand, within MPMX19_06395at 160.830 kb on + strand, within MPMX19_06395at 160.830 kb on + strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.847 kb on + strand, within MPMX19_06395at 160.902 kb on + strand, within MPMX19_06395at 161.040 kb on + strandat 161.041 kb on - strandat 161.041 kb on - strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.064 kb on + strandat 161.065 kb on - strandat 161.065 kb on - strandat 161.065 kb on - strandat 161.065 kb on - strandat 161.065 kb on - strandat 161.203 kb on + strand, within MPMX19_06396at 161.203 kb on + strand, within MPMX19_06396at 161.203 kb on + strand, within MPMX19_06396at 161.203 kb on + strand, within MPMX19_06396at 161.203 kb on + strand, within MPMX19_06396at 161.203 kb on + strand, within MPMX19_06396at 161.204 kb on - strand, within MPMX19_06396at 161.204 kb on - strand, within MPMX19_06396at 161.204 kb on - strand, within MPMX19_06396at 161.204 kb on - strand, within MPMX19_06396at 161.403 kb on + strand, within MPMX19_06396at 161.404 kb on - strand, within MPMX19_06396at 161.404 kb on - strand, within MPMX19_06396at 161.455 kb on + strand, within MPMX19_06396at 161.455 kb on + strand, within MPMX19_06396at 161.455 kb on + strand, within MPMX19_06396at 161.455 kb on + strand, within MPMX19_06396at 161.455 kb on + strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.456 kb on - strand, within MPMX19_06396at 161.729 kb on + strand, within MPMX19_06397at 161.730 kb on - strand, within MPMX19_06397at 161.810 kb on + strand, within MPMX19_06397at 161.825 kb on + strand, within MPMX19_06397at 161.825 kb on + strand, within MPMX19_06397at 161.825 kb on + strand, within MPMX19_06397at 161.907 kb on - strand, within MPMX19_06397at 161.907 kb on - strand, within MPMX19_06397at 161.907 kb on - strand, within MPMX19_06397at 161.996 kb on + strand, within MPMX19_06397at 161.996 kb on + strand, within MPMX19_06397at 161.996 kb on + strand, within MPMX19_06397at 161.996 kb on + strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397at 161.997 kb on - strand, within MPMX19_06397

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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159,802 + MPMX19_06393 0.89 +0.0
159,802 + MPMX19_06393 0.89 +0.4
159,802 + MPMX19_06393 0.89 -1.3
159,802 + MPMX19_06393 0.89 +1.7
159,802 + MPMX19_06393 0.89 -0.0
159,802 + MPMX19_06393 0.89 -0.6
159,802 + MPMX19_06393 0.89 +0.3
159,802 + MPMX19_06393 0.89 -0.4
159,802 + MPMX19_06393 0.89 -1.3
159,803 - MPMX19_06393 0.89 +0.1
159,803 - MPMX19_06393 0.89 -0.4
159,803 - MPMX19_06393 0.89 -1.8
159,803 - MPMX19_06393 0.89 +0.2
159,803 - MPMX19_06393 0.89 -0.2
159,803 - MPMX19_06393 0.89 +0.1
159,803 - MPMX19_06393 0.89 +0.5
159,803 - MPMX19_06393 0.89 -1.7
159,803 - MPMX19_06393 0.89 -1.3
159,803 - MPMX19_06393 0.89 -1.1
159,803 - MPMX19_06393 0.89 +0.2
159,803 - MPMX19_06393 0.89 -1.3
159,851 - +0.1
160,187 + MPMX19_06394 0.43 -0.6
160,187 + MPMX19_06394 0.43 +0.4
160,187 + MPMX19_06394 0.43 -0.4
160,187 + MPMX19_06394 0.43 +0.5
160,187 + MPMX19_06394 0.43 -1.5
160,187 + MPMX19_06394 0.43 -1.1
160,187 + MPMX19_06394 0.43 -0.4
160,187 + MPMX19_06394 0.43 -0.4
160,188 - MPMX19_06394 0.43 +0.9
160,188 - MPMX19_06394 0.43 +1.2
160,188 - MPMX19_06394 0.43 -0.1
160,188 - MPMX19_06394 0.43 -2.8
160,188 - MPMX19_06394 0.43 -2.3
160,188 - MPMX19_06394 0.43 +0.1
160,336 + MPMX19_06394 0.65 +0.8
160,336 + MPMX19_06394 0.65 -2.1
160,336 + MPMX19_06394 0.65 -1.3
160,336 + MPMX19_06394 0.65 -0.8
160,336 + MPMX19_06394 0.65 -1.5
160,336 + MPMX19_06394 0.65 -0.8
160,336 + MPMX19_06394 0.65 +0.0
160,336 + MPMX19_06394 0.65 +1.1
160,336 + MPMX19_06394 0.65 -1.4
160,337 - MPMX19_06394 0.65 +0.1
160,337 - MPMX19_06394 0.65 -0.4
160,337 - MPMX19_06394 0.65 -0.0
160,337 - MPMX19_06394 0.65 -0.8
160,337 - MPMX19_06394 0.65 -1.4
160,337 - MPMX19_06394 0.65 +0.3
160,337 - MPMX19_06394 0.65 +0.2
160,337 - MPMX19_06394 0.65 -0.4
160,337 - MPMX19_06394 0.65 -1.1
160,337 - MPMX19_06394 0.65 -0.9
160,338 + MPMX19_06394 0.65 -0.6
160,338 + MPMX19_06394 0.65 -1.5
160,338 + MPMX19_06394 0.65 +0.6
160,338 + MPMX19_06394 0.65 -1.0
160,339 - MPMX19_06394 0.65 -1.7
160,339 - MPMX19_06394 0.65 +0.2
160,339 - MPMX19_06394 0.65 -0.7
160,417 + MPMX19_06394 0.77 +0.2
160,417 + MPMX19_06394 0.77 -1.4
160,417 + MPMX19_06394 0.77 -1.0
160,417 + MPMX19_06394 0.77 -0.3
160,418 - MPMX19_06394 0.77 -0.2
160,418 - MPMX19_06394 0.77 -0.2
160,418 - MPMX19_06394 0.77 -0.2
160,546 + +1.8
160,546 + -1.1
160,546 + +0.4
160,546 + -1.4
160,547 - +1.3
160,702 + MPMX19_06395 0.14 -0.5
160,703 - MPMX19_06395 0.15 -1.1
160,830 + MPMX19_06395 0.44 +0.2
160,830 + MPMX19_06395 0.44 +1.8
160,831 - MPMX19_06395 0.45 +0.2
160,831 - MPMX19_06395 0.45 -0.6
160,831 - MPMX19_06395 0.45 -1.2
160,847 + MPMX19_06395 0.48 -2.3
160,902 + MPMX19_06395 0.61 -1.9
161,040 + -0.6
161,041 - +0.2
161,041 - -0.8
161,064 + -0.9
161,064 + +1.0
161,064 + -2.5
161,064 + -1.1
161,064 + -1.2
161,064 + +1.2
161,064 + -1.7
161,064 + -0.2
161,065 - -1.8
161,065 - -0.8
161,065 - -0.3
161,065 - +0.1
161,065 - +0.5
161,203 + MPMX19_06396 0.22 +0.7
161,203 + MPMX19_06396 0.22 +1.0
161,203 + MPMX19_06396 0.22 +0.3
161,203 + MPMX19_06396 0.22 -0.8
161,203 + MPMX19_06396 0.22 -1.1
161,203 + MPMX19_06396 0.22 -0.2
161,204 - MPMX19_06396 0.22 +0.2
161,204 - MPMX19_06396 0.22 -0.3
161,204 - MPMX19_06396 0.22 -0.4
161,204 - MPMX19_06396 0.22 +0.5
161,403 + MPMX19_06396 0.64 -0.1
161,404 - MPMX19_06396 0.65 +0.7
161,404 - MPMX19_06396 0.65 -0.4
161,455 + MPMX19_06396 0.75 -1.9
161,455 + MPMX19_06396 0.75 -0.5
161,455 + MPMX19_06396 0.75 +0.2
161,455 + MPMX19_06396 0.75 +1.1
161,455 + MPMX19_06396 0.75 -0.5
161,456 - MPMX19_06396 0.76 +0.1
161,456 - MPMX19_06396 0.76 +0.8
161,456 - MPMX19_06396 0.76 +0.6
161,456 - MPMX19_06396 0.76 +0.8
161,456 - MPMX19_06396 0.76 -0.3
161,456 - MPMX19_06396 0.76 -1.4
161,456 - MPMX19_06396 0.76 -0.1
161,456 - MPMX19_06396 0.76 -0.2
161,456 - MPMX19_06396 0.76 -0.0
161,456 - MPMX19_06396 0.76 +0.0
161,456 - MPMX19_06396 0.76 -0.5
161,456 - MPMX19_06396 0.76 -1.5
161,729 + MPMX19_06397 0.18 +0.7
161,730 - MPMX19_06397 0.18 -0.2
161,810 + MPMX19_06397 0.29 +0.2
161,825 + MPMX19_06397 0.31 -1.4
161,825 + MPMX19_06397 0.31 -0.3
161,825 + MPMX19_06397 0.31 -1.1
161,907 - MPMX19_06397 0.42 -1.0
161,907 - MPMX19_06397 0.42 +0.6
161,907 - MPMX19_06397 0.42 -0.3
161,996 + MPMX19_06397 0.53 +1.8
161,996 + MPMX19_06397 0.53 -0.8
161,996 + MPMX19_06397 0.53 -2.0
161,996 + MPMX19_06397 0.53 +0.3
161,997 - MPMX19_06397 0.53 +0.2
161,997 - MPMX19_06397 0.53 +0.7
161,997 - MPMX19_06397 0.53 -0.4
161,997 - MPMX19_06397 0.53 -0.6
161,997 - MPMX19_06397 0.53 -0.5
161,997 - MPMX19_06397 0.53 -0.2
161,997 - MPMX19_06397 0.53 +0.6
161,997 - MPMX19_06397 0.53 -0.4

Or see this region's nucleotide sequence