Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06391

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06390 and MPMX19_06391 are separated by 9 nucleotidesMPMX19_06391 and MPMX19_06392 are separated by 189 nucleotidesMPMX19_06392 and MPMX19_06393 are separated by 58 nucleotides MPMX19_06390: MPMX19_06390 - hypothetical protein, at 157,038 to 158,255 _06390 MPMX19_06391: MPMX19_06391 - hypothetical protein, at 158,265 to 158,534 _06391 MPMX19_06392: MPMX19_06392 - hypothetical protein, at 158,724 to 159,095 _06392 MPMX19_06393: MPMX19_06393 - hypothetical protein, at 159,154 to 159,882 _06393 Position (kb) 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3at 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.369 kb on - strand, within MPMX19_06390at 157.595 kb on - strand, within MPMX19_06390at 157.743 kb on + strand, within MPMX19_06390at 157.744 kb on - strand, within MPMX19_06390at 157.985 kb on - strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.232 kb on + strandat 158.232 kb on + strandat 158.232 kb on + strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.266 kb on + strandat 158.266 kb on + strandat 158.267 kb on - strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.546 kb on - strandat 158.563 kb on - strandat 158.563 kb on - strandat 158.658 kb on + strandat 158.658 kb on + strandat 158.659 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strandat 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.331 kb on + strand, within MPMX19_06393at 159.331 kb on + strand, within MPMX19_06393at 159.361 kb on + strand, within MPMX19_06393at 159.361 kb on + strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.403 kb on + strand, within MPMX19_06393at 159.403 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.502 kb on + strand, within MPMX19_06393at 159.503 kb on - strand, within MPMX19_06393

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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157,368 + MPMX19_06390 0.27 -2.5
157,368 + MPMX19_06390 0.27 -0.2
157,368 + MPMX19_06390 0.27 -1.7
157,369 - MPMX19_06390 0.27 +0.4
157,595 - MPMX19_06390 0.46 +0.3
157,743 + MPMX19_06390 0.58 -0.1
157,744 - MPMX19_06390 0.58 -1.2
157,985 - MPMX19_06390 0.78 -1.0
158,060 + MPMX19_06390 0.84 +0.2
158,060 + MPMX19_06390 0.84 +3.1
158,060 + MPMX19_06390 0.84 +1.1
158,060 + MPMX19_06390 0.84 +0.4
158,060 + MPMX19_06390 0.84 +1.6
158,060 + MPMX19_06390 0.84 -0.4
158,061 - MPMX19_06390 0.84 -0.8
158,061 - MPMX19_06390 0.84 +0.7
158,061 - MPMX19_06390 0.84 +0.5
158,061 - MPMX19_06390 0.84 +0.8
158,061 - MPMX19_06390 0.84 -0.6
158,061 - MPMX19_06390 0.84 +0.7
158,061 - MPMX19_06390 0.84 +1.3
158,061 - MPMX19_06390 0.84 +0.5
158,232 + -0.5
158,232 + +0.8
158,232 + -1.4
158,233 - -0.7
158,233 - -0.9
158,233 - -0.5
158,233 - +0.2
158,233 - -2.4
158,233 - +1.8
158,233 - +0.4
158,266 + +2.5
158,266 + +0.7
158,267 - -0.0
158,272 + -0.4
158,272 + -0.7
158,272 + -0.2
158,272 + +0.6
158,272 + -1.7
158,273 - -0.9
158,273 - -1.5
158,273 - -0.6
158,546 - -2.4
158,563 - -0.8
158,563 - -1.0
158,658 + -0.9
158,658 + -1.4
158,659 - +0.4
158,671 - -1.4
158,671 - -0.4
158,671 - -2.0
159,289 + MPMX19_06393 0.19 -1.2
159,289 + MPMX19_06393 0.19 +0.5
159,289 + MPMX19_06393 0.19 -0.7
159,289 + MPMX19_06393 0.19 -1.8
159,289 + MPMX19_06393 0.19 -0.4
159,289 + MPMX19_06393 0.19 -0.6
159,289 + MPMX19_06393 0.19 +0.1
159,290 - MPMX19_06393 0.19 +0.5
159,290 - MPMX19_06393 0.19 -0.5
159,290 - MPMX19_06393 0.19 -0.2
159,290 - MPMX19_06393 0.19 +0.3
159,290 - MPMX19_06393 0.19 -1.7
159,290 - MPMX19_06393 0.19 -0.3
159,290 - MPMX19_06393 0.19 +0.1
159,331 + MPMX19_06393 0.24 -0.9
159,331 + MPMX19_06393 0.24 -1.8
159,361 + MPMX19_06393 0.28 -0.2
159,361 + MPMX19_06393 0.28 -0.6
159,362 - MPMX19_06393 0.29 -0.4
159,362 - MPMX19_06393 0.29 -0.4
159,362 - MPMX19_06393 0.29 -0.4
159,362 - MPMX19_06393 0.29 +0.1
159,403 + MPMX19_06393 0.34 +0.8
159,403 + MPMX19_06393 0.34 -1.4
159,427 + MPMX19_06393 0.37 -0.7
159,427 + MPMX19_06393 0.37 +0.0
159,427 + MPMX19_06393 0.37 +0.8
159,427 + MPMX19_06393 0.37 -2.3
159,427 + MPMX19_06393 0.37 -2.4
159,427 + MPMX19_06393 0.37 +1.2
159,427 + MPMX19_06393 0.37 -1.5
159,427 + MPMX19_06393 0.37 +0.1
159,427 + MPMX19_06393 0.37 -0.4
159,427 + MPMX19_06393 0.37 -0.8
159,427 + MPMX19_06393 0.37 -0.4
159,427 + MPMX19_06393 0.37 -0.2
159,427 + MPMX19_06393 0.37 +0.5
159,427 + MPMX19_06393 0.37 -1.5
159,427 + MPMX19_06393 0.37 -0.5
159,427 + MPMX19_06393 0.37 -1.5
159,427 + MPMX19_06393 0.37 -0.5
159,428 - MPMX19_06393 0.38 -0.2
159,428 - MPMX19_06393 0.38 -1.5
159,428 - MPMX19_06393 0.38 -0.2
159,428 - MPMX19_06393 0.38 -0.4
159,428 - MPMX19_06393 0.38 -1.2
159,428 - MPMX19_06393 0.38 +0.2
159,428 - MPMX19_06393 0.38 -0.4
159,428 - MPMX19_06393 0.38 -1.1
159,428 - MPMX19_06393 0.38 -0.8
159,428 - MPMX19_06393 0.38 +0.5
159,428 - MPMX19_06393 0.38 -1.4
159,428 - MPMX19_06393 0.38 +0.7
159,428 - MPMX19_06393 0.38 -1.2
159,428 - MPMX19_06393 0.38 -0.8
159,428 - MPMX19_06393 0.38 -1.8
159,502 + MPMX19_06393 0.48 +0.2
159,503 - MPMX19_06393 0.48 -1.6

Or see this region's nucleotide sequence