Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06390

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06388 and MPMX19_06389 are separated by 51 nucleotidesMPMX19_06389 and MPMX19_06390 overlap by 11 nucleotidesMPMX19_06390 and MPMX19_06391 are separated by 9 nucleotidesMPMX19_06391 and MPMX19_06392 are separated by 189 nucleotidesMPMX19_06392 and MPMX19_06393 are separated by 58 nucleotides MPMX19_06388: MPMX19_06388 - hypothetical protein, at 155,498 to 156,823 _06388 MPMX19_06389: MPMX19_06389 - hypothetical protein, at 156,875 to 157,048 _06389 MPMX19_06390: MPMX19_06390 - hypothetical protein, at 157,038 to 158,255 _06390 MPMX19_06391: MPMX19_06391 - hypothetical protein, at 158,265 to 158,534 _06391 MPMX19_06392: MPMX19_06392 - hypothetical protein, at 158,724 to 159,095 _06392 MPMX19_06393: MPMX19_06393 - hypothetical protein, at 159,154 to 159,882 _06393 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3at 156.129 kb on + strand, within MPMX19_06388at 156.192 kb on + strand, within MPMX19_06388at 156.192 kb on + strand, within MPMX19_06388at 156.193 kb on - strand, within MPMX19_06388at 156.193 kb on - strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.222 kb on + strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.223 kb on - strand, within MPMX19_06388at 156.393 kb on + strand, within MPMX19_06388at 156.394 kb on - strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.426 kb on + strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.427 kb on - strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.519 kb on + strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.520 kb on - strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.651 kb on + strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.652 kb on - strand, within MPMX19_06388at 156.717 kb on + strandat 156.717 kb on + strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.718 kb on - strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.795 kb on + strandat 156.796 kb on - strandat 156.796 kb on - strandat 157.075 kb on + strandat 157.075 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.145 kb on - strandat 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.368 kb on + strand, within MPMX19_06390at 157.369 kb on - strand, within MPMX19_06390at 157.595 kb on - strand, within MPMX19_06390at 157.743 kb on + strand, within MPMX19_06390at 157.744 kb on - strand, within MPMX19_06390at 157.985 kb on - strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.060 kb on + strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.061 kb on - strand, within MPMX19_06390at 158.232 kb on + strandat 158.232 kb on + strandat 158.232 kb on + strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.266 kb on + strandat 158.266 kb on + strandat 158.267 kb on - strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.546 kb on - strandat 158.563 kb on - strandat 158.563 kb on - strandat 158.658 kb on + strandat 158.658 kb on + strandat 158.659 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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156,129 + MPMX19_06388 0.48 +0.7
156,192 + MPMX19_06388 0.52 -0.4
156,192 + MPMX19_06388 0.52 +0.9
156,193 - MPMX19_06388 0.52 -2.4
156,193 - MPMX19_06388 0.52 +0.5
156,222 + MPMX19_06388 0.55 -0.8
156,222 + MPMX19_06388 0.55 +0.2
156,222 + MPMX19_06388 0.55 +0.3
156,222 + MPMX19_06388 0.55 -1.9
156,222 + MPMX19_06388 0.55 +0.6
156,222 + MPMX19_06388 0.55 +0.5
156,222 + MPMX19_06388 0.55 -0.2
156,222 + MPMX19_06388 0.55 +0.4
156,222 + MPMX19_06388 0.55 -0.4
156,223 - MPMX19_06388 0.55 -0.8
156,223 - MPMX19_06388 0.55 +1.0
156,223 - MPMX19_06388 0.55 +1.2
156,223 - MPMX19_06388 0.55 +0.1
156,223 - MPMX19_06388 0.55 -2.4
156,223 - MPMX19_06388 0.55 -0.1
156,223 - MPMX19_06388 0.55 +1.8
156,223 - MPMX19_06388 0.55 -0.3
156,393 + MPMX19_06388 0.67 -0.7
156,394 - MPMX19_06388 0.68 +0.5
156,426 + MPMX19_06388 0.70 -0.1
156,426 + MPMX19_06388 0.70 +1.8
156,426 + MPMX19_06388 0.70 +0.2
156,426 + MPMX19_06388 0.70 -2.0
156,427 - MPMX19_06388 0.70 -0.1
156,427 - MPMX19_06388 0.70 -0.7
156,427 - MPMX19_06388 0.70 -1.4
156,427 - MPMX19_06388 0.70 +0.8
156,427 - MPMX19_06388 0.70 +1.4
156,427 - MPMX19_06388 0.70 -1.7
156,519 + MPMX19_06388 0.77 -0.2
156,519 + MPMX19_06388 0.77 -1.2
156,519 + MPMX19_06388 0.77 +3.1
156,519 + MPMX19_06388 0.77 -0.6
156,519 + MPMX19_06388 0.77 +0.1
156,519 + MPMX19_06388 0.77 +0.2
156,520 - MPMX19_06388 0.77 -0.6
156,520 - MPMX19_06388 0.77 -1.8
156,520 - MPMX19_06388 0.77 -0.9
156,520 - MPMX19_06388 0.77 -0.3
156,651 + MPMX19_06388 0.87 -0.7
156,651 + MPMX19_06388 0.87 -1.5
156,651 + MPMX19_06388 0.87 +0.3
156,651 + MPMX19_06388 0.87 -1.1
156,651 + MPMX19_06388 0.87 +0.1
156,651 + MPMX19_06388 0.87 +1.1
156,652 - MPMX19_06388 0.87 -0.7
156,652 - MPMX19_06388 0.87 -1.4
156,652 - MPMX19_06388 0.87 -0.1
156,652 - MPMX19_06388 0.87 -1.2
156,652 - MPMX19_06388 0.87 -0.5
156,652 - MPMX19_06388 0.87 -1.4
156,652 - MPMX19_06388 0.87 +0.6
156,652 - MPMX19_06388 0.87 -0.4
156,717 + -0.2
156,717 + +0.3
156,718 - +0.1
156,718 - -1.7
156,718 - +0.1
156,718 - +0.4
156,795 + -1.8
156,795 + -0.4
156,795 + -0.8
156,795 + -2.2
156,796 - +0.7
156,796 - -0.6
157,075 + -1.3
157,075 + +2.1
157,108 + +0.2
157,108 + -1.2
157,108 + +0.5
157,108 + -0.5
157,108 + -0.1
157,108 + +0.3
157,108 + -0.0
157,108 + +1.5
157,108 + -1.0
157,108 + -0.5
157,109 - -0.3
157,109 - +0.1
157,109 - -1.1
157,109 - -1.0
157,109 - -0.8
157,109 - -0.4
157,109 - +1.3
157,109 - -1.2
157,109 - +0.5
157,109 - -0.8
157,145 - -0.5
157,368 + MPMX19_06390 0.27 -2.5
157,368 + MPMX19_06390 0.27 -0.2
157,368 + MPMX19_06390 0.27 -1.7
157,369 - MPMX19_06390 0.27 +0.4
157,595 - MPMX19_06390 0.46 +0.3
157,743 + MPMX19_06390 0.58 -0.1
157,744 - MPMX19_06390 0.58 -1.2
157,985 - MPMX19_06390 0.78 -1.0
158,060 + MPMX19_06390 0.84 +0.2
158,060 + MPMX19_06390 0.84 +3.1
158,060 + MPMX19_06390 0.84 +1.1
158,060 + MPMX19_06390 0.84 +0.4
158,060 + MPMX19_06390 0.84 +1.6
158,060 + MPMX19_06390 0.84 -0.4
158,061 - MPMX19_06390 0.84 -0.8
158,061 - MPMX19_06390 0.84 +0.7
158,061 - MPMX19_06390 0.84 +0.5
158,061 - MPMX19_06390 0.84 +0.8
158,061 - MPMX19_06390 0.84 -0.6
158,061 - MPMX19_06390 0.84 +0.7
158,061 - MPMX19_06390 0.84 +1.3
158,061 - MPMX19_06390 0.84 +0.5
158,232 + -0.5
158,232 + +0.8
158,232 + -1.4
158,233 - -0.7
158,233 - -0.9
158,233 - -0.5
158,233 - +0.2
158,233 - -2.4
158,233 - +1.8
158,233 - +0.4
158,266 + +2.5
158,266 + +0.7
158,267 - -0.0
158,272 + -0.4
158,272 + -0.7
158,272 + -0.2
158,272 + +0.6
158,272 + -1.7
158,273 - -0.9
158,273 - -1.5
158,273 - -0.6
158,546 - -2.4
158,563 - -0.8
158,563 - -1.0
158,658 + -0.9
158,658 + -1.4
158,659 - +0.4
158,671 - -1.4
158,671 - -0.4
158,671 - -2.0

Or see this region's nucleotide sequence