Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06346

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06344 and MPMX19_06345 are separated by 313 nucleotidesMPMX19_06345 and MPMX19_06346 are separated by 18 nucleotidesMPMX19_06346 and MPMX19_06347 are separated by 11 nucleotides MPMX19_06344: MPMX19_06344 - hypothetical protein, at 110,574 to 110,780 _06344 MPMX19_06345: MPMX19_06345 - Pyruvate synthase subunit PorC, at 111,094 to 111,651 _06345 MPMX19_06346: MPMX19_06346 - Pyruvate synthase subunit PorA, at 111,670 to 112,917 _06346 MPMX19_06347: MPMX19_06347 - Pyruvate synthase subunit PorB, at 112,929 to 113,936 _06347 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 110.937 kb on + strandat 111.061 kb on + strandat 111.110 kb on + strandat 111.110 kb on + strandat 111.111 kb on - strandat 111.330 kb on + strand, within MPMX19_06345at 111.331 kb on - strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.367 kb on + strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.368 kb on - strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.377 kb on + strand, within MPMX19_06345at 111.378 kb on - strand, within MPMX19_06345at 111.378 kb on - strand, within MPMX19_06345at 111.631 kb on + strandat 111.632 kb on - strandat 111.712 kb on - strandat 111.895 kb on + strand, within MPMX19_06346at 111.895 kb on + strand, within MPMX19_06346at 111.895 kb on + strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.896 kb on - strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 111.943 kb on + strand, within MPMX19_06346at 112.324 kb on + strand, within MPMX19_06346at 112.325 kb on - strand, within MPMX19_06346at 112.466 kb on + strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.467 kb on - strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.591 kb on + strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.592 kb on - strand, within MPMX19_06346at 112.596 kb on + strand, within MPMX19_06346at 112.597 kb on - strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.699 kb on + strand, within MPMX19_06346at 112.700 kb on - strand, within MPMX19_06346at 112.700 kb on - strand, within MPMX19_06346at 112.915 kb on + strandat 112.916 kb on - strandat 112.950 kb on + strandat 112.950 kb on + strandat 112.951 kb on - strandat 112.977 kb on - strandat 112.977 kb on - strandat 112.977 kb on - strandat 113.092 kb on - strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.547 kb on + strand, within MPMX19_06347at 113.547 kb on + strand, within MPMX19_06347at 113.548 kb on - strand, within MPMX19_06347at 113.548 kb on - strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.701 kb on + strand, within MPMX19_06347at 113.702 kb on - strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.797 kb on - strand, within MPMX19_06347at 113.797 kb on - strand, within MPMX19_06347at 113.904 kb on + strandat 113.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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110,937 + -0.4
111,061 + -0.7
111,110 + +1.0
111,110 + -1.7
111,111 - +0.2
111,330 + MPMX19_06345 0.42 -1.4
111,331 - MPMX19_06345 0.42 -0.9
111,367 + MPMX19_06345 0.49 -1.0
111,367 + MPMX19_06345 0.49 +0.8
111,367 + MPMX19_06345 0.49 -2.4
111,368 - MPMX19_06345 0.49 -1.7
111,368 - MPMX19_06345 0.49 +0.8
111,368 - MPMX19_06345 0.49 -0.9
111,368 - MPMX19_06345 0.49 -0.4
111,368 - MPMX19_06345 0.49 -0.6
111,368 - MPMX19_06345 0.49 -1.9
111,377 + MPMX19_06345 0.51 -0.8
111,377 + MPMX19_06345 0.51 +0.5
111,377 + MPMX19_06345 0.51 -0.8
111,377 + MPMX19_06345 0.51 +0.2
111,378 - MPMX19_06345 0.51 +0.2
111,378 - MPMX19_06345 0.51 +0.8
111,631 + -0.5
111,632 - +0.0
111,712 - -0.9
111,895 + MPMX19_06346 0.18 +0.7
111,895 + MPMX19_06346 0.18 +0.6
111,895 + MPMX19_06346 0.18 -0.5
111,896 - MPMX19_06346 0.18 -1.7
111,896 - MPMX19_06346 0.18 +0.2
111,896 - MPMX19_06346 0.18 +0.0
111,896 - MPMX19_06346 0.18 +0.2
111,896 - MPMX19_06346 0.18 -1.5
111,943 + MPMX19_06346 0.22 -0.2
111,943 + MPMX19_06346 0.22 +0.7
111,943 + MPMX19_06346 0.22 -0.4
111,943 + MPMX19_06346 0.22 +0.5
111,943 + MPMX19_06346 0.22 -0.9
112,324 + MPMX19_06346 0.52 -0.1
112,325 - MPMX19_06346 0.52 +0.2
112,466 + MPMX19_06346 0.64 -0.1
112,467 - MPMX19_06346 0.64 -0.6
112,467 - MPMX19_06346 0.64 -0.7
112,467 - MPMX19_06346 0.64 -0.4
112,591 + MPMX19_06346 0.74 +0.2
112,591 + MPMX19_06346 0.74 -0.8
112,591 + MPMX19_06346 0.74 -0.4
112,591 + MPMX19_06346 0.74 +0.5
112,591 + MPMX19_06346 0.74 -0.0
112,591 + MPMX19_06346 0.74 +0.5
112,591 + MPMX19_06346 0.74 +1.1
112,591 + MPMX19_06346 0.74 -1.8
112,591 + MPMX19_06346 0.74 -1.0
112,592 - MPMX19_06346 0.74 -2.0
112,592 - MPMX19_06346 0.74 -1.4
112,592 - MPMX19_06346 0.74 +0.2
112,592 - MPMX19_06346 0.74 -0.2
112,592 - MPMX19_06346 0.74 -2.2
112,592 - MPMX19_06346 0.74 +0.8
112,592 - MPMX19_06346 0.74 -0.2
112,592 - MPMX19_06346 0.74 -1.5
112,592 - MPMX19_06346 0.74 -0.6
112,592 - MPMX19_06346 0.74 +0.6
112,592 - MPMX19_06346 0.74 +0.2
112,592 - MPMX19_06346 0.74 -1.5
112,592 - MPMX19_06346 0.74 -1.1
112,596 + MPMX19_06346 0.74 -1.2
112,597 - MPMX19_06346 0.74 -0.8
112,699 + MPMX19_06346 0.82 +1.8
112,699 + MPMX19_06346 0.82 -0.0
112,699 + MPMX19_06346 0.82 -0.9
112,699 + MPMX19_06346 0.82 -1.0
112,699 + MPMX19_06346 0.82 -1.6
112,699 + MPMX19_06346 0.82 +0.2
112,700 - MPMX19_06346 0.83 -1.5
112,700 - MPMX19_06346 0.83 -1.5
112,915 + +0.5
112,916 - +1.0
112,950 + -2.0
112,950 + +0.7
112,951 - +0.4
112,977 - -1.4
112,977 - +1.2
112,977 - -1.0
113,092 - MPMX19_06347 0.16 +0.8
113,379 + MPMX19_06347 0.45 +1.4
113,379 + MPMX19_06347 0.45 +1.0
113,379 + MPMX19_06347 0.45 +0.4
113,379 + MPMX19_06347 0.45 -0.1
113,379 + MPMX19_06347 0.45 +0.4
113,379 + MPMX19_06347 0.45 -0.5
113,379 + MPMX19_06347 0.45 +1.0
113,379 + MPMX19_06347 0.45 -1.0
113,379 + MPMX19_06347 0.45 +1.1
113,379 + MPMX19_06347 0.45 -0.4
113,379 + MPMX19_06347 0.45 -0.8
113,379 + MPMX19_06347 0.45 -1.0
113,380 - MPMX19_06347 0.45 -0.7
113,380 - MPMX19_06347 0.45 -0.4
113,380 - MPMX19_06347 0.45 -1.7
113,380 - MPMX19_06347 0.45 -0.2
113,380 - MPMX19_06347 0.45 +0.8
113,380 - MPMX19_06347 0.45 -1.0
113,380 - MPMX19_06347 0.45 -0.6
113,380 - MPMX19_06347 0.45 -0.1
113,380 - MPMX19_06347 0.45 -0.3
113,380 - MPMX19_06347 0.45 -1.4
113,380 - MPMX19_06347 0.45 +0.6
113,380 - MPMX19_06347 0.45 -0.6
113,380 - MPMX19_06347 0.45 -0.5
113,380 - MPMX19_06347 0.45 +0.1
113,380 - MPMX19_06347 0.45 -0.7
113,380 - MPMX19_06347 0.45 -0.7
113,380 - MPMX19_06347 0.45 -1.2
113,380 - MPMX19_06347 0.45 -0.4
113,380 - MPMX19_06347 0.45 +0.2
113,388 + MPMX19_06347 0.46 -0.4
113,388 + MPMX19_06347 0.46 -1.3
113,388 + MPMX19_06347 0.46 +0.5
113,389 - MPMX19_06347 0.46 -0.3
113,389 - MPMX19_06347 0.46 +0.4
113,389 - MPMX19_06347 0.46 -1.4
113,403 + MPMX19_06347 0.47 -0.4
113,403 + MPMX19_06347 0.47 -0.2
113,403 + MPMX19_06347 0.47 -1.4
113,403 + MPMX19_06347 0.47 +0.8
113,403 + MPMX19_06347 0.47 -0.5
113,403 + MPMX19_06347 0.47 -0.1
113,403 + MPMX19_06347 0.47 -0.1
113,403 + MPMX19_06347 0.47 +0.9
113,403 + MPMX19_06347 0.47 -0.8
113,404 - MPMX19_06347 0.47 -1.5
113,404 - MPMX19_06347 0.47 +0.0
113,404 - MPMX19_06347 0.47 -0.2
113,547 + MPMX19_06347 0.61 -1.0
113,547 + MPMX19_06347 0.61 -0.6
113,548 - MPMX19_06347 0.61 -0.8
113,548 - MPMX19_06347 0.61 -0.0
113,628 + MPMX19_06347 0.69 -1.4
113,628 + MPMX19_06347 0.69 +0.2
113,628 + MPMX19_06347 0.69 -0.8
113,628 + MPMX19_06347 0.69 -2.0
113,628 + MPMX19_06347 0.69 -1.7
113,628 + MPMX19_06347 0.69 +0.4
113,629 - MPMX19_06347 0.69 -0.2
113,629 - MPMX19_06347 0.69 -1.5
113,629 - MPMX19_06347 0.69 -1.4
113,701 + MPMX19_06347 0.77 -0.5
113,702 - MPMX19_06347 0.77 +0.5
113,796 + MPMX19_06347 0.86 -1.3
113,796 + MPMX19_06347 0.86 -0.6
113,796 + MPMX19_06347 0.86 -0.4
113,797 - MPMX19_06347 0.86 -0.2
113,797 - MPMX19_06347 0.86 +1.4
113,904 + -1.0
113,905 - -0.5

Or see this region's nucleotide sequence