Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06311 and MPMX19_06312 overlap by 4 nucleotides MPMX19_06312 and MPMX19_06313 are separated by 193 nucleotides MPMX19_06313 and MPMX19_06314 are separated by 179 nucleotides MPMX19_06314 and MPMX19_06315 are separated by 275 nucleotides
MPMX19_06311: MPMX19_06311 - Serine/threonine-protein kinase toxin HipA, at 73,775 to 75,061
_06311
MPMX19_06312: MPMX19_06312 - hypothetical protein, at 75,058 to 75,348
_06312
MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006
_06313
MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656
_06314
MPMX19_06315: MPMX19_06315 - ISL3 family transposase ISAli18, at 76,932 to 77,318
_06315
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.982 kb on + strand at 74.982 kb on + strand at 74.983 kb on - strand at 75.055 kb on + strand at 75.055 kb on + strand at 75.055 kb on + strand at 75.056 kb on - strand at 75.056 kb on - strand at 75.410 kb on - strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.504 kb on - strand at 75.509 kb on + strand at 75.509 kb on + strand at 75.509 kb on + strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.662 kb on + strand, within MPMX19_06313 at 75.663 kb on - strand, within MPMX19_06313 at 75.663 kb on - strand, within MPMX19_06313 at 75.936 kb on - strand, within MPMX19_06313 at 76.146 kb on + strand at 76.146 kb on + strand at 76.146 kb on + strand at 76.147 kb on - strand at 76.147 kb on - strand at 76.178 kb on + strand at 76.178 kb on + strand at 76.179 kb on - strand at 76.179 kb on - strand at 76.179 kb on - strand at 76.403 kb on - strand, within MPMX19_06314 at 76.420 kb on + strand, within MPMX19_06314 at 76.421 kb on - strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.600 kb on + strand, within MPMX19_06314 at 76.601 kb on - strand, within MPMX19_06314 at 76.789 kb on - strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 74,982 + +1.3 74,982 + -2.4 74,983 - -0.4 75,055 + +1.2 75,055 + +0.5 75,055 + -0.5 75,056 - -0.3 75,056 - -0.1 75,410 - -2.1 75,503 + +0.7 75,503 + -0.3 75,503 + -1.0 75,503 + -0.5 75,504 - -0.7 75,509 + -1.1 75,509 + -0.9 75,509 + -0.4 75,510 - -0.7 75,510 - +0.8 75,510 - -0.0 75,510 - +0.3 75,510 - +0.5 75,510 - -0.4 75,601 + MPMX19_06313 0.13 +0.2 75,601 + MPMX19_06313 0.13 +1.1 75,601 + MPMX19_06313 0.13 +0.8 75,601 + MPMX19_06313 0.13 +0.6 75,601 + MPMX19_06313 0.13 -1.4 75,601 + MPMX19_06313 0.13 -0.8 75,601 + MPMX19_06313 0.13 +0.4 75,601 + MPMX19_06313 0.13 +0.5 75,601 + MPMX19_06313 0.13 -0.4 75,602 - MPMX19_06313 0.13 +0.8 75,602 - MPMX19_06313 0.13 +2.3 75,602 - MPMX19_06313 0.13 -1.1 75,602 - MPMX19_06313 0.13 -2.1 75,662 + MPMX19_06313 0.26 +0.6 75,663 - MPMX19_06313 0.26 -0.5 75,663 - MPMX19_06313 0.26 +0.3 75,936 - MPMX19_06313 0.85 -0.6 76,146 + +0.8 76,146 + -0.5 76,146 + -0.7 76,147 - +1.1 76,147 - +0.4 76,178 + +0.6 76,178 + -2.1 76,179 - -0.3 76,179 - +0.2 76,179 - -0.5 76,403 - MPMX19_06314 0.46 -1.0 76,420 + MPMX19_06314 0.50 -1.0 76,421 - MPMX19_06314 0.50 +0.8 76,525 + MPMX19_06314 0.72 -1.8 76,525 + MPMX19_06314 0.72 +0.2 76,525 + MPMX19_06314 0.72 -0.7 76,525 + MPMX19_06314 0.72 -1.5 76,525 + MPMX19_06314 0.72 -1.3 76,525 + MPMX19_06314 0.72 -0.6 76,526 - MPMX19_06314 0.72 +0.7 76,526 - MPMX19_06314 0.72 +0.4 76,526 - MPMX19_06314 0.72 -0.6 76,526 - MPMX19_06314 0.72 -1.5 76,585 + MPMX19_06314 0.85 -0.7 76,585 + MPMX19_06314 0.85 -0.0 76,585 + MPMX19_06314 0.85 -0.3 76,585 + MPMX19_06314 0.85 -0.3 76,585 + MPMX19_06314 0.85 -1.4 76,585 + MPMX19_06314 0.85 +0.2 76,585 + MPMX19_06314 0.85 -0.5 76,585 + MPMX19_06314 0.85 -0.1 76,585 + MPMX19_06314 0.85 -3.1 76,585 + MPMX19_06314 0.85 -0.3 76,585 + MPMX19_06314 0.85 +0.7 76,585 + MPMX19_06314 0.85 -1.4 76,585 + MPMX19_06314 0.85 -1.0 76,585 + MPMX19_06314 0.85 +0.3 76,586 - MPMX19_06314 0.85 -0.2 76,586 - MPMX19_06314 0.85 +0.6 76,586 - MPMX19_06314 0.85 -0.5 76,586 - MPMX19_06314 0.85 -0.8 76,586 - MPMX19_06314 0.85 -0.9 76,586 - MPMX19_06314 0.85 +0.1 76,586 - MPMX19_06314 0.85 +1.1 76,586 - MPMX19_06314 0.85 +0.8 76,586 - MPMX19_06314 0.85 -0.7 76,600 + MPMX19_06314 0.88 +0.4 76,601 - MPMX19_06314 0.88 +0.8 76,789 - +0.2 76,814 + +0.1 76,814 + -1.4 76,814 + -0.5 76,814 + +1.5 76,814 + -0.3 76,815 - -0.3 76,815 - -1.1 76,815 - -0.8 76,815 - -0.2 76,815 - -0.1 76,815 - +0.3 76,815 - -0.9 76,815 - +0.1 76,815 - -0.5
Or see this region's nucleotide sequence