Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06238

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06237 and MPMX19_06238 are separated by 230 nucleotidesMPMX19_06238 and MPMX19_06239 overlap by 26 nucleotidesMPMX19_06239 and MPMX19_06240 overlap by 4 nucleotides MPMX19_06237: MPMX19_06237 - hypothetical protein, at 426,196 to 427,155 _06237 MPMX19_06238: MPMX19_06238 - L-aspartate/glutamate-specific racemase, at 427,386 to 428,111 _06238 MPMX19_06239: MPMX19_06239 - Transcriptional regulatory protein BtsR, at 428,086 to 428,814 _06239 MPMX19_06240: MPMX19_06240 - Sensor histidine kinase BtsS, at 428,811 to 430,508 _06240 Position (kb) 427 428 429Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.426 kb on - strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.641 kb on + strand, within MPMX19_06237at 426.642 kb on - strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.109 kb on + strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.250 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.443 kb on + strandat 427.444 kb on - strandat 427.446 kb on + strandat 427.446 kb on + strandat 427.447 kb on - strandat 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.905 kb on + strandat 428.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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426,425 + MPMX19_06237 0.24 -0.9
426,425 + MPMX19_06237 0.24 -1.1
426,425 + MPMX19_06237 0.24 -0.5
426,425 + MPMX19_06237 0.24 -0.4
426,426 - MPMX19_06237 0.24 -0.2
426,455 + MPMX19_06237 0.27 +1.0
426,455 + MPMX19_06237 0.27 -0.3
426,456 - MPMX19_06237 0.27 -0.1
426,456 - MPMX19_06237 0.27 +0.2
426,456 - MPMX19_06237 0.27 -0.6
426,456 - MPMX19_06237 0.27 -0.5
426,456 - MPMX19_06237 0.27 -0.8
426,456 - MPMX19_06237 0.27 +0.3
426,456 - MPMX19_06237 0.27 +0.4
426,456 - MPMX19_06237 0.27 +2.1
426,456 - MPMX19_06237 0.27 -0.3
426,456 - MPMX19_06237 0.27 +0.4
426,456 - MPMX19_06237 0.27 -0.9
426,456 - MPMX19_06237 0.27 -0.2
426,536 + MPMX19_06237 0.35 +1.1
426,536 + MPMX19_06237 0.35 -1.8
426,536 + MPMX19_06237 0.35 +0.7
426,536 + MPMX19_06237 0.35 +0.4
426,536 + MPMX19_06237 0.35 -0.8
426,537 - MPMX19_06237 0.36 -1.2
426,537 - MPMX19_06237 0.36 -1.4
426,537 - MPMX19_06237 0.36 +1.7
426,537 - MPMX19_06237 0.36 -0.6
426,537 - MPMX19_06237 0.36 -1.5
426,537 - MPMX19_06237 0.36 -0.3
426,537 - MPMX19_06237 0.36 -0.2
426,537 - MPMX19_06237 0.36 -0.4
426,537 - MPMX19_06237 0.36 -0.6
426,537 - MPMX19_06237 0.36 -0.4
426,557 + MPMX19_06237 0.38 -2.4
426,557 + MPMX19_06237 0.38 -0.7
426,557 + MPMX19_06237 0.38 +0.1
426,557 + MPMX19_06237 0.38 +0.4
426,558 - MPMX19_06237 0.38 -0.6
426,558 - MPMX19_06237 0.38 -2.4
426,641 + MPMX19_06237 0.46 +0.0
426,642 - MPMX19_06237 0.46 -0.8
427,058 + MPMX19_06237 0.90 -0.8
427,058 + MPMX19_06237 0.90 -0.2
427,058 + MPMX19_06237 0.90 -0.5
427,058 + MPMX19_06237 0.90 -0.5
427,058 + MPMX19_06237 0.90 -0.3
427,058 + MPMX19_06237 0.90 -0.5
427,058 + MPMX19_06237 0.90 -1.6
427,059 - MPMX19_06237 0.90 -0.6
427,059 - MPMX19_06237 0.90 -0.0
427,059 - MPMX19_06237 0.90 -0.6
427,059 - MPMX19_06237 0.90 -1.4
427,059 - MPMX19_06237 0.90 -1.0
427,059 - MPMX19_06237 0.90 -0.0
427,059 - MPMX19_06237 0.90 +0.3
427,059 - MPMX19_06237 0.90 +0.2
427,059 - MPMX19_06237 0.90 -1.5
427,059 - MPMX19_06237 0.90 +0.2
427,109 + +0.3
427,110 - -0.6
427,110 - +0.1
427,110 - +0.9
427,110 - -0.4
427,250 + +0.5
427,274 + -1.1
427,274 + -0.6
427,274 + -1.1
427,274 + -0.1
427,274 + -0.3
427,274 + +0.3
427,274 + -0.3
427,275 - +0.1
427,275 - -0.0
427,275 - -1.6
427,275 - -0.5
427,275 - -1.0
427,275 - +0.0
427,275 - +0.7
427,443 + -1.1
427,444 - -0.4
427,446 + -1.1
427,446 + -0.0
427,447 - +1.7
427,791 + MPMX19_06238 0.56 -2.3
427,791 + MPMX19_06238 0.56 -1.9
427,791 + MPMX19_06238 0.56 -1.9
427,791 + MPMX19_06238 0.56 -0.3
427,791 + MPMX19_06238 0.56 -0.5
427,791 + MPMX19_06238 0.56 -0.0
427,791 + MPMX19_06238 0.56 -0.5
427,791 + MPMX19_06238 0.56 -0.5
427,791 + MPMX19_06238 0.56 +0.5
427,791 + MPMX19_06238 0.56 -0.1
427,791 + MPMX19_06238 0.56 +0.1
427,791 + MPMX19_06238 0.56 -0.8
427,791 + MPMX19_06238 0.56 -1.1
427,791 + MPMX19_06238 0.56 -0.3
427,792 - MPMX19_06238 0.56 +1.2
427,792 - MPMX19_06238 0.56 +1.1
427,792 - MPMX19_06238 0.56 -1.1
427,792 - MPMX19_06238 0.56 -0.7
427,792 - MPMX19_06238 0.56 +0.9
427,792 - MPMX19_06238 0.56 -0.4
427,792 - MPMX19_06238 0.56 +0.1
427,792 - MPMX19_06238 0.56 +0.5
427,792 - MPMX19_06238 0.56 -2.3
427,792 - MPMX19_06238 0.56 -1.4
427,792 - MPMX19_06238 0.56 -0.7
427,792 - MPMX19_06238 0.56 -0.2
427,792 - MPMX19_06238 0.56 -1.5
427,875 + MPMX19_06238 0.67 -2.8
427,875 + MPMX19_06238 0.67 -1.5
427,875 + MPMX19_06238 0.67 -2.0
427,876 - MPMX19_06238 0.67 +1.1
427,876 - MPMX19_06238 0.67 +0.5
427,876 - MPMX19_06238 0.67 -0.9
428,318 + MPMX19_06239 0.32 +0.4
428,318 + MPMX19_06239 0.32 -1.1
428,318 + MPMX19_06239 0.32 -1.6
428,318 + MPMX19_06239 0.32 +0.8
428,318 + MPMX19_06239 0.32 +0.3
428,318 + MPMX19_06239 0.32 -0.1
428,318 + MPMX19_06239 0.32 -1.5
428,318 + MPMX19_06239 0.32 -0.2
428,318 + MPMX19_06239 0.32 -0.8
428,319 - MPMX19_06239 0.32 -1.6
428,319 - MPMX19_06239 0.32 -0.6
428,319 - MPMX19_06239 0.32 -0.9
428,319 - MPMX19_06239 0.32 +0.2
428,319 - MPMX19_06239 0.32 -1.8
428,319 - MPMX19_06239 0.32 +0.2
428,319 - MPMX19_06239 0.32 +0.2
428,319 - MPMX19_06239 0.32 -1.1
428,319 - MPMX19_06239 0.32 +1.0
428,319 - MPMX19_06239 0.32 -0.3
428,319 - MPMX19_06239 0.32 -1.0
428,345 + MPMX19_06239 0.36 -0.9
428,345 + MPMX19_06239 0.36 +0.4
428,345 + MPMX19_06239 0.36 +0.4
428,345 + MPMX19_06239 0.36 -0.1
428,345 + MPMX19_06239 0.36 +0.6
428,345 + MPMX19_06239 0.36 -1.9
428,346 - MPMX19_06239 0.36 -0.1
428,346 - MPMX19_06239 0.36 -0.4
428,346 - MPMX19_06239 0.36 -2.6
428,346 - MPMX19_06239 0.36 -1.0
428,346 - MPMX19_06239 0.36 -0.2
428,346 - MPMX19_06239 0.36 -1.5
428,346 - MPMX19_06239 0.36 -0.6
428,346 - MPMX19_06239 0.36 -0.8
428,346 - MPMX19_06239 0.36 +0.5
428,346 - MPMX19_06239 0.36 -0.4
428,513 + MPMX19_06239 0.59 -1.3
428,513 + MPMX19_06239 0.59 +0.4
428,513 + MPMX19_06239 0.59 -1.3
428,513 + MPMX19_06239 0.59 +0.4
428,513 + MPMX19_06239 0.59 +0.5
428,513 + MPMX19_06239 0.59 +0.4
428,513 + MPMX19_06239 0.59 +0.1
428,513 + MPMX19_06239 0.59 +0.0
428,514 - MPMX19_06239 0.59 -0.7
428,514 - MPMX19_06239 0.59 -0.9
428,514 - MPMX19_06239 0.59 +0.4
428,514 - MPMX19_06239 0.59 -0.1
428,549 + MPMX19_06239 0.64 -2.4
428,549 + MPMX19_06239 0.64 -0.0
428,549 + MPMX19_06239 0.64 +0.2
428,549 + MPMX19_06239 0.64 -1.1
428,549 + MPMX19_06239 0.64 +1.5
428,550 - MPMX19_06239 0.64 -0.2
428,550 - MPMX19_06239 0.64 +0.4
428,550 - MPMX19_06239 0.64 +1.4
428,550 - MPMX19_06239 0.64 +0.3
428,893 + -0.5
428,893 + -0.5
428,893 + -0.2
428,893 + +0.7
428,894 - +0.1
428,894 - -1.0
428,894 - -1.2
428,894 - -2.0
428,905 + -0.7
428,906 - -0.3

Or see this region's nucleotide sequence