Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06215

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06214 and MPMX19_06215 overlap by 1 nucleotidesMPMX19_06215 and MPMX19_06216 overlap by 4 nucleotides MPMX19_06214: MPMX19_06214 - Aldose 1-epimerase, at 396,770 to 397,801 _06214 MPMX19_06215: MPMX19_06215 - Inner membrane ABC transporter permease protein YjfF, at 397,801 to 398,787 _06215 MPMX19_06216: MPMX19_06216 - Inner membrane ABC transporter permease protein YtfT, at 398,784 to 399,827 _06216 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1at 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.906 kb on + strand, within MPMX19_06214at 396.907 kb on - strand, within MPMX19_06214at 396.946 kb on - strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.527 kb on + strand, within MPMX19_06214at 397.599 kb on + strand, within MPMX19_06214at 397.599 kb on + strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 398.073 kb on - strand, within MPMX19_06215at 398.087 kb on + strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 399.169 kb on + strand, within MPMX19_06216at 399.169 kb on + strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.784 kb on + strandat 399.784 kb on + strandat 399.784 kb on + strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
396,807 + -0.9
396,807 + +0.3
396,807 + -1.5
396,807 + +1.3
396,807 + -0.5
396,808 - +0.7
396,808 - -0.6
396,808 - -2.4
396,808 - +0.1
396,808 - -0.6
396,808 - -0.9
396,808 - -0.4
396,808 - -1.0
396,808 - -2.3
396,808 - -0.3
396,906 + MPMX19_06214 0.13 +0.3
396,907 - MPMX19_06214 0.13 -0.3
396,946 - MPMX19_06214 0.17 -0.3
396,957 + MPMX19_06214 0.18 -2.1
396,957 + MPMX19_06214 0.18 -0.5
396,957 + MPMX19_06214 0.18 -0.5
396,958 - MPMX19_06214 0.18 +0.3
396,958 - MPMX19_06214 0.18 -0.0
396,958 - MPMX19_06214 0.18 -0.0
396,958 - MPMX19_06214 0.18 -1.2
397,269 + MPMX19_06214 0.48 +0.5
397,269 + MPMX19_06214 0.48 -0.3
397,269 + MPMX19_06214 0.48 +1.0
397,269 + MPMX19_06214 0.48 -1.5
397,269 + MPMX19_06214 0.48 -1.6
397,269 + MPMX19_06214 0.48 -1.3
397,269 + MPMX19_06214 0.48 -0.8
397,269 + MPMX19_06214 0.48 +0.7
397,270 - MPMX19_06214 0.48 -0.4
397,270 - MPMX19_06214 0.48 +0.1
397,270 - MPMX19_06214 0.48 +0.2
397,270 - MPMX19_06214 0.48 -1.8
397,270 - MPMX19_06214 0.48 +0.4
397,270 - MPMX19_06214 0.48 +0.1
397,270 - MPMX19_06214 0.48 -2.0
397,270 - MPMX19_06214 0.48 +0.4
397,270 - MPMX19_06214 0.48 -0.5
397,270 - MPMX19_06214 0.48 +0.6
397,527 + MPMX19_06214 0.73 -0.2
397,599 + MPMX19_06214 0.80 +0.4
397,599 + MPMX19_06214 0.80 -0.7
397,600 - MPMX19_06214 0.80 -0.0
397,600 - MPMX19_06214 0.80 -1.1
397,600 - MPMX19_06214 0.80 -0.9
397,617 + MPMX19_06214 0.82 -0.9
397,617 + MPMX19_06214 0.82 +0.4
397,617 + MPMX19_06214 0.82 -0.8
397,618 - MPMX19_06214 0.82 -0.2
397,618 - MPMX19_06214 0.82 -0.8
397,618 - MPMX19_06214 0.82 -0.3
397,618 - MPMX19_06214 0.82 -0.8
397,618 - MPMX19_06214 0.82 -1.3
397,937 + MPMX19_06215 0.14 -0.5
397,937 + MPMX19_06215 0.14 +1.0
397,937 + MPMX19_06215 0.14 -0.4
397,937 + MPMX19_06215 0.14 -0.1
397,937 + MPMX19_06215 0.14 +0.2
397,937 + MPMX19_06215 0.14 -1.3
397,937 + MPMX19_06215 0.14 +0.4
397,937 + MPMX19_06215 0.14 +0.3
397,937 + MPMX19_06215 0.14 +0.1
397,937 + MPMX19_06215 0.14 -0.6
397,937 + MPMX19_06215 0.14 +0.1
397,937 + MPMX19_06215 0.14 -0.6
397,937 + MPMX19_06215 0.14 +1.0
397,937 + MPMX19_06215 0.14 -1.5
397,937 + MPMX19_06215 0.14 -0.3
397,937 + MPMX19_06215 0.14 +0.3
397,937 + MPMX19_06215 0.14 +0.2
397,937 + MPMX19_06215 0.14 +0.3
397,937 + MPMX19_06215 0.14 +1.0
397,937 + MPMX19_06215 0.14 -0.2
397,938 - MPMX19_06215 0.14 -1.0
397,938 - MPMX19_06215 0.14 +0.7
397,938 - MPMX19_06215 0.14 -1.5
397,938 - MPMX19_06215 0.14 -0.3
397,938 - MPMX19_06215 0.14 -1.2
397,938 - MPMX19_06215 0.14 -0.0
397,938 - MPMX19_06215 0.14 -0.1
397,938 - MPMX19_06215 0.14 -0.5
397,938 - MPMX19_06215 0.14 -1.0
397,938 - MPMX19_06215 0.14 +0.3
397,938 - MPMX19_06215 0.14 +1.1
397,938 - MPMX19_06215 0.14 +0.2
397,938 - MPMX19_06215 0.14 -0.2
397,938 - MPMX19_06215 0.14 -1.1
397,938 - MPMX19_06215 0.14 +0.7
397,938 - MPMX19_06215 0.14 +0.9
397,938 - MPMX19_06215 0.14 -0.2
397,938 - MPMX19_06215 0.14 +0.4
397,938 - MPMX19_06215 0.14 -0.9
397,938 - MPMX19_06215 0.14 +1.0
397,938 - MPMX19_06215 0.14 -0.1
397,938 - MPMX19_06215 0.14 +0.7
397,938 - MPMX19_06215 0.14 -1.2
397,938 - MPMX19_06215 0.14 -0.5
397,988 + MPMX19_06215 0.19 +0.7
397,988 + MPMX19_06215 0.19 -1.8
397,988 + MPMX19_06215 0.19 -0.1
397,988 + MPMX19_06215 0.19 -1.9
397,988 + MPMX19_06215 0.19 +0.4
397,988 + MPMX19_06215 0.19 -2.0
397,989 - MPMX19_06215 0.19 -1.1
397,989 - MPMX19_06215 0.19 -0.2
398,073 - MPMX19_06215 0.28 +1.0
398,087 + MPMX19_06215 0.29 -1.1
398,088 - MPMX19_06215 0.29 +0.3
398,088 - MPMX19_06215 0.29 -1.2
398,088 - MPMX19_06215 0.29 -0.1
398,088 - MPMX19_06215 0.29 -0.3
398,138 + MPMX19_06215 0.34 +1.3
398,138 + MPMX19_06215 0.34 +0.7
398,138 + MPMX19_06215 0.34 +0.7
398,139 - MPMX19_06215 0.34 +0.7
398,139 - MPMX19_06215 0.34 -1.3
398,139 - MPMX19_06215 0.34 -0.0
398,139 - MPMX19_06215 0.34 +0.2
398,139 - MPMX19_06215 0.34 -0.5
398,139 - MPMX19_06215 0.34 -0.2
398,139 - MPMX19_06215 0.34 -0.0
398,139 - MPMX19_06215 0.34 -0.5
398,139 - MPMX19_06215 0.34 +1.1
398,211 - MPMX19_06215 0.42 -0.3
398,211 - MPMX19_06215 0.42 -1.9
398,211 - MPMX19_06215 0.42 +0.7
398,342 + MPMX19_06215 0.55 +0.1
398,342 + MPMX19_06215 0.55 +1.7
398,342 + MPMX19_06215 0.55 -0.3
398,342 + MPMX19_06215 0.55 -0.6
398,343 - MPMX19_06215 0.55 +0.4
398,343 - MPMX19_06215 0.55 +1.7
398,343 - MPMX19_06215 0.55 -0.9
398,343 - MPMX19_06215 0.55 -0.5
398,343 - MPMX19_06215 0.55 +0.1
398,343 - MPMX19_06215 0.55 +0.4
398,343 - MPMX19_06215 0.55 +0.3
399,169 + MPMX19_06216 0.37 +0.9
399,169 + MPMX19_06216 0.37 -2.0
399,170 - MPMX19_06216 0.37 -1.9
399,170 - MPMX19_06216 0.37 -1.1
399,170 - MPMX19_06216 0.37 -0.6
399,170 - MPMX19_06216 0.37 -1.4
399,170 - MPMX19_06216 0.37 +0.4
399,170 - MPMX19_06216 0.37 -0.4
399,170 - MPMX19_06216 0.37 +1.2
399,170 - MPMX19_06216 0.37 -0.3
399,170 - MPMX19_06216 0.37 -0.3
399,170 - MPMX19_06216 0.37 -0.8
399,170 - MPMX19_06216 0.37 -0.5
399,170 - MPMX19_06216 0.37 -2.5
399,170 - MPMX19_06216 0.37 -0.2
399,170 - MPMX19_06216 0.37 -0.9
399,784 + +0.3
399,784 + -2.1
399,784 + -1.0
399,785 - +0.6
399,785 - +0.1
399,785 - -0.1
399,785 - +1.1
399,785 - -0.1

Or see this region's nucleotide sequence