Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06197

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06196 and MPMX19_06197 overlap by 4 nucleotidesMPMX19_06197 and MPMX19_06198 are separated by 72 nucleotidesMPMX19_06198 and MPMX19_06199 are separated by 57 nucleotides MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934 _06196 MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536 _06197 MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992 _06198 MPMX19_06199: MPMX19_06199 - GTPase HflX, at 386,050 to 387,396 _06199 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1at 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.435 kb on - strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.779 kb on + strand, within MPMX19_06196at 384.779 kb on + strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.942 kb on + strandat 384.943 kb on - strandat 384.943 kb on - strandat 385.100 kb on - strand, within MPMX19_06197at 385.100 kb on - strand, within MPMX19_06197at 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.966 kb on + strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.967 kb on - strandat 385.990 kb on + strandat 385.990 kb on + strandat 385.990 kb on + strandat 385.991 kb on - strandat 386.171 kb on + strandat 386.171 kb on + strandat 386.171 kb on + strandat 386.172 kb on - strandat 386.172 kb on - strandat 386.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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384,434 + MPMX19_06196 0.63 -0.3
384,434 + MPMX19_06196 0.63 -1.5
384,434 + MPMX19_06196 0.63 -0.4
384,434 + MPMX19_06196 0.63 +0.7
384,435 - MPMX19_06196 0.63 -1.5
384,743 + MPMX19_06196 0.86 -0.4
384,743 + MPMX19_06196 0.86 +0.7
384,743 + MPMX19_06196 0.86 -1.6
384,743 + MPMX19_06196 0.86 -0.5
384,743 + MPMX19_06196 0.86 +0.2
384,743 + MPMX19_06196 0.86 +0.7
384,743 + MPMX19_06196 0.86 -1.6
384,743 + MPMX19_06196 0.86 -0.3
384,744 - MPMX19_06196 0.86 +0.8
384,744 - MPMX19_06196 0.86 -1.1
384,744 - MPMX19_06196 0.86 -0.1
384,744 - MPMX19_06196 0.86 +0.4
384,744 - MPMX19_06196 0.86 +0.3
384,744 - MPMX19_06196 0.86 -0.2
384,744 - MPMX19_06196 0.86 -0.0
384,744 - MPMX19_06196 0.86 +0.7
384,744 - MPMX19_06196 0.86 +0.7
384,779 + MPMX19_06196 0.89 -0.3
384,779 + MPMX19_06196 0.89 -2.0
384,780 - MPMX19_06196 0.89 +1.7
384,780 - MPMX19_06196 0.89 +1.5
384,780 - MPMX19_06196 0.89 +0.3
384,942 + -0.4
384,943 - -0.6
384,943 - -0.5
385,100 - MPMX19_06197 0.28 -0.8
385,100 - MPMX19_06197 0.28 -1.0
385,477 + -0.2
385,477 + -0.3
385,477 + -0.3
385,477 + -0.4
385,477 + -1.1
385,477 + +0.8
385,477 + -0.6
385,477 + +0.5
385,478 - +1.1
385,478 - -1.1
385,478 - +0.1
385,478 - +1.1
385,478 - -1.1
385,478 - -0.3
385,750 + MPMX19_06198 0.37 -1.8
385,750 + MPMX19_06198 0.37 +1.0
385,750 + MPMX19_06198 0.37 -0.7
385,750 + MPMX19_06198 0.37 -0.2
385,750 + MPMX19_06198 0.37 -0.9
385,750 + MPMX19_06198 0.37 -0.8
385,750 + MPMX19_06198 0.37 -0.9
385,750 + MPMX19_06198 0.37 -1.5
385,750 + MPMX19_06198 0.37 -0.4
385,750 + MPMX19_06198 0.37 -0.3
385,751 - MPMX19_06198 0.37 +0.4
385,751 - MPMX19_06198 0.37 -0.9
385,751 - MPMX19_06198 0.37 -1.5
385,751 - MPMX19_06198 0.37 +1.7
385,751 - MPMX19_06198 0.37 -0.6
385,966 + +0.3
385,966 + -2.3
385,966 + -0.0
385,966 + -0.1
385,966 + -0.5
385,966 + -2.0
385,966 + -0.6
385,966 + +0.3
385,966 + -0.7
385,967 - +0.1
385,967 - -0.3
385,967 - +0.5
385,967 - -1.3
385,967 - -1.9
385,967 - -0.5
385,967 - -3.4
385,967 - -0.9
385,967 - -0.5
385,967 - -2.6
385,990 + +1.1
385,990 + -0.7
385,990 + -1.4
385,991 - -0.4
386,171 + +0.3
386,171 + +1.3
386,171 + -0.3
386,172 - -0.3
386,172 - -0.7
386,172 - +0.0

Or see this region's nucleotide sequence