Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06192 and MPMX19_06193 are separated by 27 nucleotides MPMX19_06193 and MPMX19_06194 are separated by 11 nucleotides MPMX19_06194 and MPMX19_06195 are separated by 24 nucleotides MPMX19_06195 and MPMX19_06196 are separated by 116 nucleotides
MPMX19_06192: MPMX19_06192 - hypothetical protein, at 381,949 to 382,215
_06192
MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602
_06193
MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033
_06194
MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450
_06195
MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934
_06196
Position (kb) 383
384 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.271 kb on + strand at 382.271 kb on + strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.565 kb on + strand, within MPMX19_06193 at 382.565 kb on + strand, within MPMX19_06193 at 382.565 kb on + strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.790 kb on - strand, within MPMX19_06194 at 382.898 kb on - strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.926 kb on - strand, within MPMX19_06194 at 383.050 kb on + strand at 383.050 kb on + strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.339 kb on - strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.399 kb on - strand, within MPMX19_06195 at 383.524 kb on + strand at 383.524 kb on + strand at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.435 kb on - strand, within MPMX19_06196
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 382,271 + -2.0 382,271 + -1.1 382,272 - +0.7 382,272 - -1.2 382,565 + MPMX19_06193 0.89 -0.0 382,565 + MPMX19_06193 0.89 -0.3 382,565 + MPMX19_06193 0.89 -0.3 382,566 - MPMX19_06193 0.90 -0.4 382,566 - MPMX19_06193 0.90 -1.3 382,566 - MPMX19_06193 0.90 +0.8 382,753 + MPMX19_06194 0.33 +0.2 382,753 + MPMX19_06194 0.33 -0.3 382,753 + MPMX19_06194 0.33 +2.0 382,753 + MPMX19_06194 0.33 -0.4 382,753 + MPMX19_06194 0.33 +0.4 382,753 + MPMX19_06194 0.33 -1.4 382,753 + MPMX19_06194 0.33 -2.3 382,753 + MPMX19_06194 0.33 -0.3 382,754 - MPMX19_06194 0.33 +0.1 382,754 - MPMX19_06194 0.33 -0.3 382,754 - MPMX19_06194 0.33 -1.2 382,754 - MPMX19_06194 0.33 -1.2 382,754 - MPMX19_06194 0.33 -0.3 382,754 - MPMX19_06194 0.33 -0.3 382,754 - MPMX19_06194 0.33 +0.0 382,754 - MPMX19_06194 0.33 +0.1 382,754 - MPMX19_06194 0.33 -0.6 382,789 + MPMX19_06194 0.42 +0.7 382,789 + MPMX19_06194 0.42 -0.6 382,789 + MPMX19_06194 0.42 -1.9 382,789 + MPMX19_06194 0.42 -0.9 382,790 - MPMX19_06194 0.42 +0.4 382,898 - MPMX19_06194 0.68 +0.4 382,925 + MPMX19_06194 0.74 -1.3 382,925 + MPMX19_06194 0.74 +0.1 382,926 - MPMX19_06194 0.74 -1.0 383,050 + -0.4 383,050 + +0.6 383,051 - -0.0 383,051 - +1.7 383,051 - -1.7 383,051 - -1.1 383,051 - -0.0 383,051 - -0.2 383,339 - MPMX19_06195 0.72 -1.5 383,398 + MPMX19_06195 0.87 -1.0 383,398 + MPMX19_06195 0.87 -0.6 383,398 + MPMX19_06195 0.87 -1.5 383,399 - MPMX19_06195 0.87 -1.2 383,524 + +0.6 383,524 + -0.6 384,434 + MPMX19_06196 0.63 -0.3 384,434 + MPMX19_06196 0.63 -1.5 384,434 + MPMX19_06196 0.63 -0.4 384,434 + MPMX19_06196 0.63 +0.7 384,435 - MPMX19_06196 0.63 -1.5
Or see this region's nucleotide sequence