Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06180 and MPMX19_06181 overlap by 14 nucleotides MPMX19_06181 and MPMX19_06182 are separated by 22 nucleotides MPMX19_06182 and MPMX19_06183 overlap by 4 nucleotides
MPMX19_06180: MPMX19_06180 - Sensor histidine kinase RegB, at 370,046 to 371,323
_06180
MPMX19_06181: MPMX19_06181 - Photosynthetic apparatus regulatory protein RegA, at 371,310 to 371,864
_06181
MPMX19_06182: MPMX19_06182 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 371,887 to 372,717
_06182
MPMX19_06183: MPMX19_06183 - Phosphoglucosamine mutase, at 372,714 to 374,087
_06183
Position (kb) 371
372 Strain fitness (log2 ratio) -2
-1
0
1 at 370.310 kb on + strand, within MPMX19_06180 at 370.310 kb on + strand, within MPMX19_06180 at 370.349 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.940 kb on + strand, within MPMX19_06180 at 371.888 kb on + strand at 372.694 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 370,310 + MPMX19_06180 0.21 -2.0 370,310 + MPMX19_06180 0.21 -1.5 370,349 + MPMX19_06180 0.24 -1.3 370,478 + MPMX19_06180 0.34 -0.9 370,478 + MPMX19_06180 0.34 -1.4 370,478 + MPMX19_06180 0.34 +0.1 370,478 + MPMX19_06180 0.34 -2.0 370,940 + MPMX19_06180 0.70 -0.3 371,888 + +0.7 372,694 - -0.0
Or see this region's nucleotide sequence